View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14631_low_5 (Length: 382)
Name: NF14631_low_5
Description: NF14631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14631_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 20274414 - 20274793
Alignment:
| Q |
1 |
aatgggccctttagagcttgcagacttcattggattggatgtatgcctgtctataatgaaagttcttcatgctggccttggggacaataaatattcacct |
100 |
Q |
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| T |
20274414 |
aatgggccctttagagcttgcagacttcattggattggatgtatgcttgtctataatgaaagttcttcatgctggccttggggacaataaatattcacct |
20274513 |
T |
|
| Q |
101 |
tgccctctacttgtacagtatgttgatgctggcagacttggaagaaaacgaggtattggcgtgtatgactatagtaaagagccaaagtcttcaaaatcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20274514 |
tgccctctacttgtacagtatgttgatgctggcagacttggaagaaaacgaggtattggcgtgtatgactatagtaaagagcaaaagtcttcaaaatcat |
20274613 |
T |
|
| Q |
201 |
cttctcgtctctaaaatgtttggtttccttggaagaataagttgtcagcaccacacttgcaccctgtttctgaactttggg-----tactgaaattgagt |
295 |
Q |
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| T |
20274614 |
cttctcgtctctaaaatgtttggtttccttggaagaataagttgtcagcaccacacttgcaccctgtttctgaactttgggtacattactgaaattgagt |
20274713 |
T |
|
| Q |
296 |
ggaatagagttagtcatct------gatctctctttcactcactcgttttagagctcgtctcttctattttatgttacat |
369 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
20274714 |
ggaatagagttagtcatctgatctcgatctctctttcactcattcgtttttgagctcgtctcttctattttatgttacat |
20274793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 21061042 - 21061421
Alignment:
| Q |
1 |
aatgggccctttagagcttgcagacttcattggattggatgtatgcctgtctataatgaaagttcttcatgctggccttggggacaataaatattcacct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21061042 |
aatgggccctttagagcttgcagacttcattggattggatgtatgcttgtctataatgaaagttcttcatgctggccttggggacaataaatattcacct |
21061141 |
T |
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| Q |
101 |
tgccctctacttgtacagtatgttgatgctggcagacttggaagaaaacgaggtattggcgtgtatgactatagtaaagagccaaagtcttcaaaatcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21061142 |
tgccctctacttgtacagtatgttgatgctggcagacttggaagaaaacgaggtattggcgtgtatgactatagtaaagagcaaaagtcttcaaaatcat |
21061241 |
T |
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| Q |
201 |
cttctcgtctctaaaatgtttggtttccttggaagaataagttgtcagcaccacacttgcaccctgtttctgaactttggg-----tactgaaattgagt |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21061242 |
cttctcgtctctaaaatgtttggtttccttggaagaataagttgtcagcaccacacttgcaccctgtttctgaactttgggtacattactgaaattgagt |
21061341 |
T |
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| Q |
296 |
ggaatagagttagtcatct------gatctctctttcactcactcgttttagagctcgtctcttctattttatgttacat |
369 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
21061342 |
ggaatagagttagtcatctgatctcgatctctctttcactcattcgtttttgagctcgtctcttctattttatgttacat |
21061421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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