View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14631_low_7 (Length: 333)
Name: NF14631_low_7
Description: NF14631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14631_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 51 - 314
Target Start/End: Original strand, 5401813 - 5402076
Alignment:
| Q |
51 |
attattttattttacactttttaagcctttacatgtacattactcaaaggaaatttggatacttgtgtccc-gacctcaactcagttgcatcgnnnnnnn |
149 |
Q |
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| T |
5401813 |
attattttattttccactttttg-gtctttacatgtacattactcaaaggaaatttgcatacttgtgtccccgacctcaactcggttgcaccgttattct |
5401911 |
T |
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| Q |
150 |
gaggtattatccatttttgagtcttgtgtgagctatcacaattttgtctttagttaaaagacatttagatgggttgagaagagtaagtgtctataaacta |
249 |
Q |
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| T |
5401912 |
gaggtattatccatttttgagtcttgtgtgaggtatcacaattttgtctttagttaaaagacatttaggtgggttgagaagagtaagtgtctataaacca |
5402011 |
T |
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| Q |
250 |
ctcttagcttcgattttcaaacattgtgggactaaaggttacgtcagccctcacatgtggcttaa |
314 |
Q |
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| T |
5402012 |
ctcttagcttcgatttccaaataacgtgggactaaaggttatgtcaaccctcgcgtgtggcttaa |
5402076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 9631055 - 9630991
Alignment:
| Q |
185 |
tcacaattttgtctttagttaaaagacatttagatgggttgagaagagtaagtgtctataaacta |
249 |
Q |
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| T |
9631055 |
tcacgattttgtctttagttaaaagacatctcaatcagttgagaagagtgagtgtttataaacta |
9630991 |
T |
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