View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14631_low_9 (Length: 264)
Name: NF14631_low_9
Description: NF14631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14631_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 4 - 255
Target Start/End: Complemental strand, 5401807 - 5401556
Alignment:
| Q |
4 |
ataaacaccaacagaataataatagtacctatcatgagcttggaatgaacataaaccatgaatcttctannnnnnngtgcattcaagtattgtgtttcag |
103 |
Q |
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| T |
5401807 |
ataaacactaacagaataataatattacctatcatgagcttggaatgaacataaaccatgaatcttctatttttctgtgcattccagtattgtgtttcag |
5401708 |
T |
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| Q |
104 |
gatgaggagaatctaatggaagatactctccttttcccttatgctccctatttgcaagacaaaagaaattcaagtagtcttttggatgtcctatttcacc |
203 |
Q |
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| T |
5401707 |
gataaggagaatccaatggaagatactctccttttcccttatgctccctatttgcaagacaaaagaaattcaagtagtcttttggatgtcctatttcacc |
5401608 |
T |
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| Q |
204 |
actttcttttattgcttcaccaatcaatctatacatcattgccacaggttct |
255 |
Q |
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| T |
5401607 |
actttctttaattgcttcaccaatcaatctatacatcattgccacagtttct |
5401556 |
T |
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Back To:
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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 244
Target Start/End: Original strand, 43052059 - 43052274
Alignment:
| Q |
29 |
tacctatcatgagcttggaatgaacataaaccatgaatcttctannnnnnngtgcattcaagtattgtgtttcaggatgaggagaatctaatggaagata |
128 |
Q |
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| T |
43052059 |
tacctatcatgagcttggagtgaacataaaccatgaatcttctatttttctgtgcactccaatattgagtatcaggaagaggagaatgtggaggaagata |
43052158 |
T |
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| Q |
129 |
ctctccttttcccttatgctccctatttgcaagacaaaagaaattcaagtagtcttttggatgtcctatttcaccactttcttttattgcttcaccaatc |
228 |
Q |
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| T |
43052159 |
ttcttcattttccttcttttctctatttgcaaggcaaaagaaattcaagtaatctcttggatgtcctggctcaccactttctatgattgcttctccaatc |
43052258 |
T |
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| Q |
229 |
aatctatacatcattg |
244 |
Q |
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| T |
43052259 |
aacttatacatcattg |
43052274 |
T |
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