View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14632_high_2 (Length: 423)

Name: NF14632_high_2
Description: NF14632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14632_high_2
NF14632_high_2
[»] chr7 (7 HSPs)
chr7 (1-423)||(34004825-34005247)
chr7 (302-420)||(34014981-34015099)
chr7 (293-414)||(33993205-33993326)
chr7 (284-414)||(33983523-33983653)
chr7 (12-49)||(39258866-39258903)
chr7 (1-49)||(1799545-1799593)
chr7 (1-49)||(3237350-3237398)
[»] chr8 (8 HSPs)
chr8 (257-420)||(12708323-12708488)
chr8 (1-49)||(32615839-32615887)
chr8 (1-46)||(8152973-8153018)
chr8 (1-49)||(13521766-13521814)
chr8 (1-49)||(13611301-13611349)
chr8 (5-49)||(24585829-24585873)
chr8 (1-49)||(41570045-41570093)
chr8 (1-49)||(42964789-42964836)
[»] chr6 (5 HSPs)
chr6 (1-49)||(30326677-30326725)
chr6 (1-49)||(342951-342999)
chr6 (332-402)||(9237829-9237899)
chr6 (5-50)||(31597586-31597631)
chr6 (1-49)||(9049990-9050038)
[»] chr1 (6 HSPs)
chr1 (1-49)||(31963051-31963099)
chr1 (5-49)||(27262807-27262851)
chr1 (1-38)||(24980881-24980918)
chr1 (1-38)||(24989639-24989676)
chr1 (5-49)||(26761232-26761276)
chr1 (1-49)||(44698034-44698082)
[»] chr2 (5 HSPs)
chr2 (7-40)||(37038620-37038653)
chr2 (5-49)||(8741040-8741084)
chr2 (1-49)||(37426581-37426629)
chr2 (9-49)||(2630926-2630966)
chr2 (1-49)||(11074562-11074610)
[»] scaffold0074 (1 HSPs)
scaffold0074 (1-40)||(29752-29791)
[»] chr3 (1 HSPs)
chr3 (1-47)||(31732134-31732180)
[»] chr5 (2 HSPs)
chr5 (1-46)||(19608782-19608827)
chr5 (1-49)||(844807-844855)


Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 34004825 - 34005247
Alignment:
Q  1 tttcaatgtgttgaatacacaaattccaatataaaatttccattttaaaagaatcatggagatactgttaaatcatccatacacctattttgaaagaact 100  Q
    ||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34004825 tttcaatgtgttgcatacacaaattccaagataaattttccattttaaaagaatcatggagatattgttaaatcatccatacacctattttgaaagaact 34004924  T
Q  101 atgaacagaaaaatatctgtcttttaacagttttgagaagaaacgattacaatttcccctcatactctatgcagcacttacacatattgaagatgtgtgt 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34004925 atgaacagaaaaatatctgtcatttaacagttttgagaagaaatgattacaatttcccctcatactctatgcagcacttacacatattgaagacgtgtgt 34005024  T
Q  201 ggttttcgacactgacgcgacattcgaagcaatattgtgtctggtgtcgatgtttcatagaacatactgacataggttaattgtttgtaaaatgaaaatt 300  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34005025 ggttttcgacactgacgcgacattcgaagcaatattgtgtccagtgtcgatgtttcatagaacatactgacatagtttaattgtttgtaaaatgaaaatt 34005124  T
Q  301 gtagttgggaatggcgactgcgttgtcaaccctttgtggacaagcatatggtgcaaaagaatatggaatgatgggagtatatcttcaaagatcatggata 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34005125 gtagttgggaatggcgactgcgttgtcaaccctttgtggacaagcatatggtgcaaaagaatatggaatgatgggagtatatcttcaaagatcatggata 34005224  T
Q  401 gttttattcctaactgcacttgt 423  Q
    |||||||||||||||||||||||    
T  34005225 gttttattcctaactgcacttgt 34005247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 302 - 420
Target Start/End: Original strand, 34014981 - 34015099
Alignment:
Q  302 tagttgggaatggcgactgcgttgtcaaccctttgtggacaagcatatggtgcaaaagaatatggaatgatgggagtatatcttcaaagatcatggatag 401  Q
    ||||| |||||||| | ||| ||| |||| || |||||||||||||| |||||||||||||||||  | |||||||| ||||||||||||||||||||||    
T  34014981 tagttaggaatggctagtgcattggcaacactatgtggacaagcatacggtgcaaaagaatatggcctaatgggagtgtatcttcaaagatcatggatag 34015080  T
Q  402 ttttattcctaactgcact 420  Q
    ||||||   ||||||||||    
T  34015081 ttttatctttaactgcact 34015099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 293 - 414
Target Start/End: Original strand, 33993205 - 33993326
Alignment:
Q  293 tgaaaattgtagttgggaatggcgactgcgttgtcaaccctttgtggacaagcatatggtgcaaaagaatatggaatgatgggagtatatcttcaaagat 392  Q
    ||||||||||||||||| ||||| | ||| ||   ||| || ||||||||||||||||| |||||| |||||| |||| | ||||| |||||||||||||    
T  33993205 tgaaaattgtagttgggtatggcaagtgcattagaaacactatgtggacaagcatatggagcaaaacaatatgaaatgcttggagtgtatcttcaaagat 33993304  T
Q  393 catggatagttttattcctaac 414  Q
    ||||||||||| ||||| ||||    
T  33993305 catggatagttatattcttaac 33993326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 284 - 414
Target Start/End: Original strand, 33983523 - 33983653
Alignment:
Q  284 tttgtaaaatgaaaattgtagttgggaatggcgactgcgttgtcaaccctttgtggacaagcatatggtgcaaaagaatatggaatgatgggagtatatc 383  Q
    |||| ||| |||||||||||| | || ||||| | ||| |||  ||| || ||||||||||||||||| |||||| ||||||  ||| | ||||||||||    
T  33983523 tttgcaaattgaaaattgtagctaggtatggcaagtgcattggaaacactatgtggacaagcatatggagcaaaacaatatgatatgctaggagtatatc 33983622  T
Q  384 ttcaaagatcatggatagttttattcctaac 414  Q
    ||||||||||||| |||||||||||| ||||    
T  33983623 ttcaaagatcatgaatagttttattcataac 33983653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 39258903 - 39258866
Alignment:
Q  12 tgaatacacaaattccaatataaaatttccattttaaa 49  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  39258903 tgaatacacaaatttcaaaataaaatttccattttaaa 39258866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1799593 - 1799545
Alignment:
Q  1 tttcaatgtgttgaatacacaaattccaatataaaatttccattttaaa 49  Q
    ||||||||||||||||| |||| |||||| ||||||||| || ||||||    
T  1799593 tttcaatgtgttgaatatacaacttccaaaataaaatttacactttaaa 1799545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3237350 - 3237398
Alignment:
Q  1 tttcaatgtgttgaatacacaaattccaatataaaatttccattttaaa 49  Q
    |||||||  |||||||||||||| ||||| ||||||||| |||||||||    
T  3237350 tttcaataggttgaatacacaaaatccaagataaaatttgcattttaaa 3237398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 257 - 420
Target Start/End: Original strand, 12708323 - 12708488
Alignment:
Q  257 atagaacatactgacataggttaattgtttgtaaaatgaaaattgtagttgggaatggcgact---gcgttgtcaaccctttgtggacaagcatatggtg 353  Q
    |||||||||||| ||| | ||||||||||||||||||| ||||||||||||||| || |||||   || ||| | || | ||| ||||| ||||||||||    
T  12708323 atagaacatactaacacaagttaattgtttgtaaaatgtaaattgtagttgggattgtcgactactgctttgacgacacgttgcggacatgcatatggtg 12708422  T
Q  354 caaaagaatatggaatgatgggagtatatcttcaaagatcatggatagttttattcctaactgcact 420  Q
    ||||| ||||| |||||||||||||| || |||||||||||||||||| |||||||||| |||||||    
T  12708423 caaaaaaatattgaatgatgggagtacatattcaaagatcatggatag-tttattcctagctgcact 12708488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32615887 - 32615839
Alignment:
Q  1 tttcaatgtgttgaatacacaaattccaatataaaatttccattttaaa 49  Q
    |||||||||||||||||||| |||||||| |||||||||| | ||||||    
T  32615887 tttcaatgtgttgaatacacgaattccaagataaaatttctactttaaa 32615839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 8153018 - 8152973
Alignment:
Q  1 tttcaatgtgttgaatacacaaattccaatataaaatttccatttt 46  Q
    ||||||| | ||||||||| ||||||||| ||||||||||||||||    
T  8153018 tttcaatatattgaatacataaattccaagataaaatttccatttt 8152973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13521766 - 13521814
Alignment:
Q  1 tttcaatgtgttgaatacacaaattccaatataaaatttccattttaaa 49  Q
    ||||||||||| ||||||||||||| ||| |||||||||| | ||||||    
T  13521766 tttcaatgtgtagaatacacaaatttcaaaataaaatttctactttaaa 13521814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13611301 - 13611349
Alignment:
Q  1 tttcaatgtgttgaatacacaaattccaatataaaatttccattttaaa 49  Q
    ||||||||||| ||||||||||||| ||| |||||||||| | ||||||    
T  13611301 tttcaatgtgtagaatacacaaatttcaaaataaaatttctactttaaa 13611349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 24585873 - 24585829
Alignment:
Q  5 aatgtgttgaatacacaaattccaatataaaatttccattttaaa 49  Q
    ||||||||||||| ||||||| ||| |||||||||| ||||||||    
T  24585873 aatgtgttgaataaacaaatttcaagataaaatttctattttaaa 24585829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 41570093 - 41570045
Alignment:
Q  1 tttcaatgtgttgaatacacaaattccaatataaaatttccattttaaa 49  Q
    ||||||||||||||||||| |||| |||| |||||||||| | ||||||    
T  41570093 tttcaatgtgttgaatacataaatcccaagataaaatttctactttaaa 41570045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42964836 - 42964789
Alignment:
Q  1 tttcaatgtgttgaatacacaaattccaatataaaatttccattttaaa 49  Q
    |||||||||||||||||||| ||| |||| |||||||||||| ||||||    
T  42964836 tttcaatgtgttgaatacac-aatcccaagataaaatttccactttaaa 42964789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 30326725 - 30326677
Alignment:
Q  1 tttcaatgtgttgaatacacaaattccaatataaaatttccattttaaa 49  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||    
T  30326725 tttcaatgtgttgaatacacaaatcccaagataaaatttccattttaaa 30326677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 342999 - 342951
Alignment:
Q  1 tttcaatgtgttgaatacacaaattccaatataaaatttccattttaaa 49  Q
    ||||||||||||||||||| ||||||||| | ||||||| |||||||||    
T  342999 tttcaatgtgttgaatacataaattccaaaacaaaattttcattttaaa 342951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 402
Target Start/End: Complemental strand, 9237899 - 9237829
Alignment:
Q  332 ctttgtggacaagcatatggtgcaaaagaatatggaatgatgggagtatatcttcaaagatcatggatagt 402  Q
    |||||||||||||||||||| |||||| ||||  | ||| | ||||| ||||| |||||||| ||||||||    
T  9237899 ctttgtggacaagcatatggagcaaaacaatacagcatgcttggagtgtatctacaaagatcttggatagt 9237829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 31597586 - 31597631
Alignment:
Q  5 aatgtgttgaatacacaaattccaatataaaatttccattttaaaa 50  Q
    |||||||||||| |||||||| ||| | ||||||||||||||||||    
T  31597586 aatgtgttgaatgcacaaatttcaagacaaaatttccattttaaaa 31597631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 9050038 - 9049990
Alignment:
Q  1 tttcaatgtgttgaatacacaaattccaatataaaatttccattttaaa 49  Q
    |||||||||||||||||||||| || ||| ||||| |||| ||||||||    
T  9050038 tttcaatgtgttgaatacacaactttcaaaataaactttctattttaaa 9049990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31963051 - 31963099
Alignment:
Q  1 tttcaatgtgttgaatacacaaattccaatataaaatttccattttaaa 49  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||    
T  31963051 tttcaatgtgttgaatacacaaattccaaaacaaaatttccattttaaa 31963099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 27262807 - 27262851
Alignment:
Q  5 aatgtgttgaatacacaaattccaatataaaatttccattttaaa 49  Q
    |||||||||||||||||||||| || | |||||||||||||||||    
T  27262807 aatgtgttgaatacacaaattctaagacaaaatttccattttaaa 27262851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 24980881 - 24980918
Alignment:
Q  1 tttcaatgtgttgaatacacaaattccaatataaaatt 38  Q
    |||||||||||||||||||||||||| || ||||||||    
T  24980881 tttcaatgtgttgaatacacaaattctaagataaaatt 24980918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 24989639 - 24989676
Alignment:
Q  1 tttcaatgtgttgaatacacaaattccaatataaaatt 38  Q
    |||||||||||||||||||||||||| || ||||||||    
T  24989639 tttcaatgtgttgaatacacaaattctaagataaaatt 24989676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 26761232 - 26761276
Alignment:
Q  5 aatgtgttgaatacacaaattccaatataaaatttccattttaaa 49  Q
    |||||||||||||||||||||  || ||||||||| |||||||||    
T  26761232 aatgtgttgaatacacaaattttaagataaaattttcattttaaa 26761276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 44698082 - 44698034
Alignment:
Q  1 tttcaatgtgttgaatacacaaattccaatataaaatttccattttaaa 49  Q
    ||||||| |||||||||||||| |||||| |||||| ||||| ||||||    
T  44698082 tttcaatatgttgaatacacaacttccaagataaaacttccactttaaa 44698034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 37038653 - 37038620
Alignment:
Q  7 tgtgttgaatacacaaattccaatataaaatttc 40  Q
    ||||||||||||||||||||||||||||||||||    
T  37038653 tgtgttgaatacacaaattccaatataaaatttc 37038620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 8741040 - 8741084
Alignment:
Q  5 aatgtgttgaatacacaaattccaatataaaatttccattttaaa 49  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||||    
T  8741040 aatgtattgaatacacaaattccaagataaaatttctattttaaa 8741084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37426581 - 37426629
Alignment:
Q  1 tttcaatgtgttgaatacacaaattccaatataaaatttccattttaaa 49  Q
    |||||||||||||||||||||||| ||||  ||||||||| ||||||||    
T  37426581 tttcaatgtgttgaatacacaaatcccaaagtaaaatttctattttaaa 37426629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 2630966 - 2630926
Alignment:
Q  9 tgttgaatacacaaattccaatataaaatttccattttaaa 49  Q
    |||||||||||||| ||| ||||||||||||||| ||||||    
T  2630966 tgttgaatacacaacttctaatataaaatttccactttaaa 2630926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11074562 - 11074610
Alignment:
Q  1 tttcaatgtgttgaatacacaaattccaatataaaatttccattttaaa 49  Q
    |||||||||||||||||||||||| |||| | |||||||| | ||||||    
T  11074562 tttcaatgtgttgaatacacaaatcccaagaaaaaatttctactttaaa 11074610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29752 - 29791
Alignment:
Q  1 tttcaatgtgttgaatacacaaattccaatataaaatttc 40  Q
    |||||||||||||||||||| |||||||| ||||||||||    
T  29752 tttcaatgtgttgaatacacgaattccaagataaaatttc 29791  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 31732134 - 31732180
Alignment:
Q  1 tttcaatgtgttgaatacacaaattccaatataaaatttccatttta 47  Q
    ||||||| |||||||||||||||| |||| |||||| ||||||||||    
T  31732134 tttcaatatgttgaatacacaaatcccaagataaaacttccatttta 31732180  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19608827 - 19608782
Alignment:
Q  1 tttcaatgtgttgaatacacaaattccaatataaaatttccatttt 46  Q
    ||||||||||||||||| ||||||||||| ||||| ||||| ||||    
T  19608827 tttcaatgtgttgaatagacaaattccaagataaagtttccttttt 19608782  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 844807 - 844855
Alignment:
Q  1 tttcaatgtgttgaatacacaaattccaatataaaatttccattttaaa 49  Q
    |||||||||||||||||||||| |||||| ||| |||| ||| ||||||    
T  844807 tttcaatgtgttgaatacacaacttccaaaatagaattaccactttaaa 844855  T

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