View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14632_low_1 (Length: 488)

Name: NF14632_low_1
Description: NF14632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14632_low_1
NF14632_low_1
[»] chr2 (4 HSPs)
chr2 (148-488)||(45342338-45342678)
chr2 (34-85)||(45342224-45342275)
chr2 (1-34)||(29224482-29224515)
chr2 (1-34)||(29337781-29337814)
[»] chr8 (8 HSPs)
chr8 (1-36)||(9067527-9067562)
chr8 (1-35)||(11308348-11308382)
chr8 (1-35)||(28370861-28370895)
chr8 (1-34)||(3299568-3299601)
chr8 (1-34)||(8742645-8742678)
chr8 (1-34)||(16583144-16583177)
chr8 (1-34)||(27348793-27348826)
chr8 (1-34)||(41576693-41576726)
[»] chr3 (6 HSPs)
chr3 (1-36)||(9990162-9990197)
chr3 (1-35)||(10385430-10385464)
chr3 (1-34)||(8626391-8626424)
chr3 (1-34)||(23383072-23383105)
chr3 (1-34)||(52307447-52307480)
chr3 (175-215)||(14244668-14244708)
[»] chr1 (5 HSPs)
chr1 (1-36)||(9667056-9667091)
chr1 (1-35)||(12167577-12167611)
chr1 (1-34)||(431702-431735)
chr1 (1-34)||(39000543-39000576)
chr1 (1-34)||(49249831-49249864)
[»] scaffold0298 (2 HSPs)
scaffold0298 (1-35)||(11565-11599)
scaffold0298 (1-35)||(15335-15369)
[»] scaffold0124 (1 HSPs)
scaffold0124 (1-35)||(12962-12996)
[»] chr7 (5 HSPs)
chr7 (1-35)||(8107249-8107283)
chr7 (1-35)||(22321161-22321195)
chr7 (1-35)||(31157636-31157670)
chr7 (1-34)||(6173282-6173315)
chr7 (1-34)||(10345668-10345701)
[»] chr5 (7 HSPs)
chr5 (1-35)||(11767522-11767556)
chr5 (1-34)||(9405191-9405224)
chr5 (1-34)||(11722638-11722671)
chr5 (1-34)||(24836489-24836522)
chr5 (1-34)||(30606438-30606471)
chr5 (1-34)||(31846713-31846746)
chr5 (1-34)||(33435369-33435402)
[»] scaffold0336 (1 HSPs)
scaffold0336 (1-34)||(9510-9543)
[»] scaffold0159 (1 HSPs)
scaffold0159 (1-34)||(28261-28294)
[»] scaffold0147 (1 HSPs)
scaffold0147 (1-34)||(7497-7530)
[»] scaffold0076 (1 HSPs)
scaffold0076 (1-34)||(25011-25044)
[»] scaffold0015 (1 HSPs)
scaffold0015 (1-34)||(175368-175401)
[»] chr6 (1 HSPs)
chr6 (1-34)||(3539815-3539848)
[»] chr4 (3 HSPs)
chr4 (1-34)||(324206-324239)
chr4 (1-34)||(5272925-5272958)
chr4 (1-34)||(22048448-22048481)
[»] scaffold0617 (2 HSPs)
scaffold0617 (175-215)||(3274-3314)
scaffold0617 (175-215)||(8718-8758)


Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 148 - 488
Target Start/End: Original strand, 45342338 - 45342678
Alignment:
Q  148 caatttgcaaacaaagccatagtggagtgttttaaatgtcacaaactaggacatttccaatatgaatgcccaagatggaaggaaagtgcaaactatgctg 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  45342338 caatttgcaaacaaagccatagtggagtgttttaaatgtcacaaactaggacatttccaatatgaatgcccaagatggaaggaaagtgcaaactatgttg 45342437  T
Q  248 aaattgatgaagaagaagagatgctgctcatgtcctttgttgatgctaccaattcaaaacaagaagatacatggttcctcgactccggttgtagcaatca 347  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  45342438 aaattgatgaagaagaagagatgctgctcatgtcctttgttgaagctaccaattcaaaacaagaagatatatggtttctcgactccggttgtagcaatca 45342537  T
Q  348 catgtgcggaaacaagcagtggttttctaccattgatgaagatttcaaacactcggtaaagctcggcaacgattccaaaatggcggtaatgggaaaaggg 447  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45342538 catgtgcggaaacaagcagtggttttctaccattaatgaagatttcaaacactcggtaaagctcggcaacgattccaaaatggtggtaatgggaaaaggg 45342637  T
Q  448 aacattcgacttgagatcaatggtgcaattcaagtagtcac 488  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  45342638 aacatttgacttgagatcaatggtgcaattcaagtagtcac 45342678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 45342224 - 45342275
Alignment:
Q  34 agagacactagagatgagcaagcgttgaaggtttcacatgaagatcaaaatg 85  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45342224 agagacactagagatgagcaagcgttgaaggtttcacatgaagatcaaaatg 45342275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 29224482 - 29224515
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  29224482 aaatagttttatgagaggtaaaaatccttcatca 29224515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 29337781 - 29337814
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  29337781 aaatagttttatgagaggtaaaaatccttcatca 29337814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9067562 - 9067527
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatcaga 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  9067562 aaatagttttatgagaggtaaaaatccttcatcaga 9067527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 11308382 - 11308348
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatcag 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  11308382 aaatagttttatgagaggtaaaaatccttcatcag 11308348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 28370861 - 28370895
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatcag 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  28370861 aaatagttttatgagaggtaaaaatccttcatcag 28370895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 3299568 - 3299601
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  3299568 aaatagttttatgagaggtaaaaatccttcatca 3299601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 8742678 - 8742645
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  8742678 aaatagttttatgagaggtaaaaatccttcatca 8742645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 16583144 - 16583177
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  16583144 aaatagttttatgagaggtaaaaatccttcatca 16583177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 27348793 - 27348826
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  27348793 aaatagttttatgagaggtaaaaatccttcatca 27348826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 41576726 - 41576693
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  41576726 aaatagttttatgagaggtaaaaatccttcatca 41576693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9990162 - 9990197
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatcaga 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  9990162 aaatagttttatgagaggtaaaaatccttcatcaga 9990197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 10385464 - 10385430
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatcag 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  10385464 aaatagttttatgagaggtaaaaatccttcatcag 10385430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 8626391 - 8626424
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  8626391 aaatagttttatgagaggtaaaaatccttcatca 8626424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 23383072 - 23383105
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  23383072 aaatagttttatgagaggtaaaaatccttcatca 23383105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 52307480 - 52307447
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  52307480 aaatagttttatgagaggtaaaaatccttcatca 52307447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 14244668 - 14244708
Alignment:
Q  175 tgttttaaatgtcacaaactaggacatttccaatatgaatg 215  Q
    ||||| |||||||||||| | ||||||||||||||||||||    
T  14244668 tgtttcaaatgtcacaaattgggacatttccaatatgaatg 14244708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9667091 - 9667056
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatcaga 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  9667091 aaatagttttatgagaggtaaaaatccttcatcaga 9667056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 12167611 - 12167577
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatcag 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  12167611 aaatagttttatgagaggtgaaaaaccttcatcag 12167577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 431735 - 431702
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  431735 aaatagttttatgagaggtaaaaatccttcatca 431702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 39000576 - 39000543
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  39000576 aaatagttttatgagaggtaaaaatccttcatca 39000543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 49249831 - 49249864
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  49249831 aaatagttttatgagaggtaaaaatccttcatca 49249864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0298
Description:

Target: scaffold0298; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 11599 - 11565
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatcag 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  11599 aaatagttttatgagaggtaaaaatccttcatcag 11565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 15369 - 15335
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatcag 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  15369 aaatagttttatgagaggtaaaaatccttcatcag 15335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 12962 - 12996
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatcag 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  12962 aaatagttttatgagaggtaaaaatccttcatcag 12996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 8107283 - 8107249
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatcag 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  8107283 aaatagttttatgagaggtaaaaatccttcatcag 8107249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 22321195 - 22321161
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatcag 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  22321195 aaatagttttatgagaggtaaaaatccttcatcag 22321161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 31157670 - 31157636
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatcag 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  31157670 aaatagttttatgagaggtaaaaatccttcatcag 31157636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 6173282 - 6173315
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  6173282 aaatagttttatgagaggtaaaaatccttcatca 6173315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 10345701 - 10345668
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  10345701 aaatagttttatgagaggtaaaaatccttcatca 10345668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 11767522 - 11767556
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatcag 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  11767522 aaatagttttatgagaggtaaaaatccttcatcag 11767556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 9405191 - 9405224
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  9405191 aaatagttttatgagaggtaaaaatccttcatca 9405224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 11722671 - 11722638
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  11722671 aaatagttttatgagaggtaaaaatccttcatca 11722638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 24836489 - 24836522
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  24836489 aaatagttttatgagaggtaaaaatccttcatca 24836522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30606471 - 30606438
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  30606471 aaatagttttatgagaggtaaaaatccttcatca 30606438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 31846713 - 31846746
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  31846713 aaatagttttatgagaggtaaaaatccttcatca 31846746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 33435369 - 33435402
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  33435369 aaatagttttatgagaggtaaaaatccttcatca 33435402  T

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Target: scaffold0336 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 9510 - 9543
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  9510 aaatagttttatgagaggtaaaaatccttcatca 9543  T

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Target: scaffold0159 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 28294 - 28261
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  28294 aaatagttttatgagaggtaaaaatccttcatca 28261  T

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Target: scaffold0147 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 7497 - 7530
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  7497 aaatagttttatgagaggtaaaaatccttcatca 7530  T

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Target: scaffold0076 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 25044 - 25011
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  25044 aaatagttttatgagaggtaaaaatccttcatca 25011  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 175368 - 175401
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  175368 aaatagttttatgagaggtaaaaatccttcatca 175401  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 3539815 - 3539848
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  3539815 aaatagttttatgagaggtaaaaatccttcatca 3539848  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 324206 - 324239
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  324206 aaatagttttatgagaggtaaaaatccttcatca 324239  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 5272958 - 5272925
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  5272958 aaatagttttatgagaggtaaaaatccttcatca 5272925  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 22048448 - 22048481
Alignment:
Q  1 aaatagttttatgagaggtaaaaaaccttcatca 34  Q
    |||||||||||||||||||||||| |||||||||    
T  22048448 aaatagttttatgagaggtaaaaatccttcatca 22048481  T

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Target: scaffold0617 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: scaffold0617
Description:

Target: scaffold0617; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 3314 - 3274
Alignment:
Q  175 tgttttaaatgtcacaaactaggacatttccaatatgaatg 215  Q
    ||||| |||||||||||| | ||||||||||||||||||||    
T  3314 tgtttcaaatgtcacaaattgggacatttccaatatgaatg 3274  T

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Target: scaffold0617; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 8758 - 8718
Alignment:
Q  175 tgttttaaatgtcacaaactaggacatttccaatatgaatg 215  Q
    ||||| |||||||||||| | ||||||||||||||||||||    
T  8758 tgtttcaaatgtcacaaattgggacatttccaatatgaatg 8718  T

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