View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14632_low_10 (Length: 208)
Name: NF14632_low_10
Description: NF14632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14632_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 36 - 189
Target Start/End: Original strand, 24288218 - 24288371
Alignment:
| Q |
36 |
gaaaattttcctatctctgcaataattctttgatatcatatcattgcaactgcgtattaaatcaggggaagcattcttagtaataagtaaagtgcctaat |
135 |
Q |
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| T |
24288218 |
gaaaattttcctatctctgcaataattctttgatatcatatccttgcaactgtgtataaaatcaggggaagcattcttagtaataagtaaaacgcctaat |
24288317 |
T |
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| Q |
136 |
tgcaaatactaacttgatttgggttgccagtaaagcacgatagaaatccctact |
189 |
Q |
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| T |
24288318 |
ttcaaatactaacttgatttgggttgccagtaaagcatgatagaaatccctact |
24288371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 14 - 155
Target Start/End: Original strand, 24281378 - 24281519
Alignment:
| Q |
14 |
cacagaccttatacaaacacatgaaaattttcctatctctgcaataattctttgatatcatatcattgcaactgcgtattaaatcaggggaagcattctt |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || |||||||||||||||||||| |
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| T |
24281378 |
cacaaaccttatacaaacacatgaaaattttcctatctctgcaataattctttgatatcatatccttgcaactgtgaatcaaatcaggggaagcattctt |
24281477 |
T |
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| Q |
114 |
agtaataagtaaagtgcctaattgcaaatactaacttgattt |
155 |
Q |
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| T |
24281478 |
agtaataagtaaagcgcctaattgcaaatactaacttgattt |
24281519 |
T |
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