View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14632_low_2 (Length: 468)
Name: NF14632_low_2
Description: NF14632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14632_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 183 - 454
Target Start/End: Complemental strand, 11402580 - 11402307
Alignment:
| Q |
183 |
catatgaactttatttatattttaaatatttgttgaaatttaaaaatatgagtgaact-aacacttgctagttatttaaaaataagatggtatattttta |
281 |
Q |
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| T |
11402580 |
catatgaactttatttatattttaaatatttgttgaaatttaaaaatatgagtgaacttaacacttgctagttatttaaaaataagatggtatattttta |
11402481 |
T |
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| Q |
282 |
ttatgatcttgaaaatagttgatgcactttttccataaccaaatttgcttcttctgttggac-tgcaacttatatttcatgatggtgtagggaaagtttc |
380 |
Q |
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| T |
11402480 |
ttatgatcttgaaaatagttgatgcactttttccataacaaaatttgcttctgctgttggacttgtaacttatagtttacgatggtgtagggaaagtttc |
11402381 |
T |
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| Q |
381 |
catctatatttctaccagtagaaattaaaaacataacgaaagcaaaacatggaagtgactctggtgtctatgat |
454 |
Q |
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| T |
11402380 |
catctatatttctaccagtagaaattaaaaacataacaaaagcaaaacatggaagtgactctggtgtctatgat |
11402307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 11402726 - 11402688
Alignment:
| Q |
38 |
ctttgtattccattcaaggactcactaaagcttatatca |
76 |
Q |
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| T |
11402726 |
ctttgtatcccattcaaggactcactaaaacttatatca |
11402688 |
T |
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