View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14632_low_5 (Length: 364)
Name: NF14632_low_5
Description: NF14632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14632_low_5 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 2 - 364
Target Start/End: Original strand, 24281033 - 24281406
Alignment:
| Q |
2 |
cacttttcacatgatcctcctcccaagctaacaa-cctccttcaataaattcatgcttcacaacgtactcaccagcctatggtattcatcttagttaccg |
100 |
Q |
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|||||||||| | ||||||||||||||||||||| |||||||| |||||| ||||||||||||| ||||| | |||||||||||||||| |||| ||||| |
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| T |
24281033 |
cacttttcacctaatcctcctcccaagctaacaaacctccttccataaatccatgcttcacaacctactcccgagcctatggtattcatgttagctaccg |
24281132 |
T |
|
| Q |
101 |
tcactaatttattatcagataattcatacaaccttatgagcctaacattcaacgagcctcattccaaccaaggatccctccaaaacaacgtagatgaccc |
200 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24281133 |
tcacaaatttattatcagataatttatacaaccttatgagc-taacattcaatgagcctcattccaaccaagaatccctccaaaacaacgtagatgaccc |
24281231 |
T |
|
| Q |
201 |
atcacccactttactcactgtattgttgacaaaccaactccccaca-----------tctgtcacgaaccatgttgaaattcttccgtcaaactgaaact |
289 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24281232 |
atcacccactttcctcactgtattgttgacaaaccaactccccacacccacacctactctgtcacgaaccatgttgaaattcttccgtcaaactgaaact |
24281331 |
T |
|
| Q |
290 |
actacccctccataacataagtctcactcctctccataacggacaacacacaccttatacaaacacatgaaaatt |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24281332 |
actacccctccataacataagtctcactcctctccataacggacaacacaaaccttatacaaacacatgaaaatt |
24281406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 29483927 - 29483565
Alignment:
| Q |
1 |
gcacttttcacatgatcctcctcccaagctaacaacctccttcaataaattcatgcttcacaacgtactcaccagcctatggtattcatcttagttaccg |
100 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||| | |||| ||||||||||||| ||||| ||||||||||| ||||||||||||||||| |
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|
| T |
29483927 |
gcacttttcacctgatcctcctcccaagctaacaacctccttccacaaatacatgcttcacaacctactccccagcctatggaattcatcttagttaccg |
29483828 |
T |
|
| Q |
101 |
tcactaatttattatcagataattcatacaaccttatgagcctaacattcaacgagcctcattccaaccaaggatccctccaaaacaacgtagatgaccc |
200 |
Q |
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|| |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29483827 |
tcgctaatttattattagataattcatacaatcttatgagcctaacattcagcgagcctcattccaaccaaggatccctccaaaacaacgtagatgaccc |
29483728 |
T |
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| Q |
201 |
atcacccactttactcactgtattgttgacaaaccaactccccaca--------------tctgtcacgaaccatgttgaaattcttccgtcaaactgaa |
286 |
Q |
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|||||||||||| |||||||||||||||||||| ||| |||||||| || || |||||||||||||||||||||| |||||||||| |
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| T |
29483727 |
atcacccacttttctcactgtattgttgacaaatcaattccccacacctacacctacgactccctctcgaaccatgttgaaattcttccatcaaactgaa |
29483628 |
T |
|
| Q |
287 |
actactacccctccataacataagtctcactcctctccataacggacaacacacaccttatac |
349 |
Q |
| |
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||||||||| ||| |||||||||| |||||||||||||||||| |||||||||||| |||||| |
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|
| T |
29483627 |
actactacctctctataacataagcctcactcctctccataaccgacaacacacactttatac |
29483565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 44666635 - 44666570
Alignment:
| Q |
84 |
attcatcttagttaccgtcactaatttattatcagataattcatacaaccttatgagcctaacatt |
149 |
Q |
| |
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||||||||| |||| ||| |||||||||| ||| |||| |||||||||||| ||| ||||||||| |
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| T |
44666635 |
attcatctttgttagcgttgctaatttattttcaaataaatcatacaaccttctgaacctaacatt |
44666570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 7e-74; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 23503110 - 23503294
Alignment:
| Q |
1 |
gcacttttcacatgatcctcctcccaagctaacaacctccttcaataaattcatgcttcacaacgtactcaccagcctatggtattcatcttagttaccg |
100 |
Q |
| |
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||||||||||| ||||||||||||||||||| ||||||||||| | |||| ||||||||||||| ||||| ||||||||| |||||||||||||||||| |
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| T |
23503110 |
gcacttttcacctgatcctcctcccaagctagcaacctccttccacaaatccatgcttcacaacctactcctcagcctatgttattcatcttagttaccg |
23503209 |
T |
|
| Q |
101 |
tcactaatttattatcagataattcatacaaccttatgagcctaacattcaacgagcctcattccaaccaaggatccctccaaaa |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
23503210 |
tcactaatttattatcagataattcatacaaccttatgagcctaacattcaacgagcctcattgcaaacaaggatccctccaaaa |
23503294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 26691034 - 26691080
Alignment:
| Q |
163 |
tccaaccaaggatccctccaaaacaacgtagatgacccatcacccac |
209 |
Q |
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||||||||| ||||||||||||||| ||||| |||||||||||||| |
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| T |
26691034 |
tccaaccaatgatccctccaaaacatagtagaagacccatcacccac |
26691080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 26960766 - 26960812
Alignment:
| Q |
163 |
tccaaccaaggatccctccaaaacaacgtagatgacccatcacccac |
209 |
Q |
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||||||||| ||||||||||||||| ||||| |||||||||||||| |
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| T |
26960766 |
tccaaccaatgatccctccaaaacatagtagaagacccatcacccac |
26960812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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