View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14633_high_1 (Length: 639)

Name: NF14633_high_1
Description: NF14633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14633_high_1
NF14633_high_1
[»] chr4 (34 HSPs)
chr4 (16-632)||(3232336-3232952)
chr4 (124-351)||(36284512-36284753)
chr4 (124-351)||(46433058-46433295)
chr4 (112-351)||(16529839-16530089)
chr4 (112-351)||(56192223-56192474)
chr4 (112-354)||(36755121-36755374)
chr4 (127-351)||(3533873-3534108)
chr4 (99-311)||(38476142-38476366)
chr4 (241-339)||(13205540-13205638)
chr4 (242-338)||(44515929-44516025)
chr4 (354-453)||(13231240-13231339)
chr4 (112-342)||(55692926-55693172)
chr4 (256-347)||(12832330-12832421)
chr4 (127-337)||(29844982-29845186)
chr4 (251-340)||(25197277-25197367)
chr4 (242-351)||(45549023-45549132)
chr4 (246-349)||(17999062-17999165)
chr4 (242-316)||(54183974-54184048)
chr4 (259-316)||(15024556-15024613)
chr4 (358-453)||(13232689-13232784)
chr4 (112-351)||(37996914-37997161)
chr4 (99-195)||(12832429-12832525)
chr4 (355-426)||(10128708-10128779)
chr4 (127-354)||(44707558-44707795)
chr4 (99-189)||(13205684-13205774)
chr4 (355-427)||(35602467-35602539)
chr4 (354-450)||(53753421-53753517)
chr4 (267-342)||(19477216-19477291)
chr4 (112-232)||(25197401-25197523)
chr4 (253-351)||(43334691-43334790)
chr4 (129-219)||(43334539-43334629)
chr4 (372-450)||(53752255-53752333)
chr4 (356-408)||(12691734-12691786)
chr4 (251-311)||(28992540-28992600)
[»] chr7 (30 HSPs)
chr7 (101-354)||(27164135-27164395)
chr7 (124-351)||(34519284-34519523)
chr7 (99-351)||(1706399-1706663)
chr7 (124-351)||(965253-965495)
chr7 (112-351)||(12287089-12287338)
chr7 (133-351)||(41966103-41966331)
chr7 (242-354)||(1778782-1778893)
chr7 (112-338)||(35015741-35015979)
chr7 (101-354)||(1910963-1911226)
chr7 (242-338)||(29235519-29235615)
chr7 (245-354)||(4905086-4905195)
chr7 (242-351)||(6182620-6182729)
chr7 (242-339)||(26575994-26576091)
chr7 (242-350)||(33037368-33037476)
chr7 (122-221)||(22527988-22528087)
chr7 (251-338)||(2485147-2485234)
chr7 (112-250)||(16706616-16706757)
chr7 (112-250)||(17680852-17680993)
chr7 (356-450)||(39527084-39527178)
chr7 (242-311)||(22528123-22528191)
chr7 (355-453)||(39525678-39525776)
chr7 (99-149)||(47066134-47066184)
chr7 (355-455)||(47733022-47733122)
chr7 (355-455)||(47738995-47739095)
chr7 (127-220)||(4167291-4167384)
chr7 (283-347)||(4163288-4163352)
chr7 (116-205)||(6182499-6182590)
chr7 (256-308)||(38555716-38555768)
chr7 (169-250)||(47066044-47066127)
chr7 (204-248)||(48601479-48601523)
[»] chr3 (25 HSPs)
chr3 (112-351)||(20935996-20936245)
chr3 (124-351)||(29078741-29078982)
chr3 (112-354)||(19332034-19332288)
chr3 (112-316)||(26919235-26919444)
chr3 (251-351)||(11137761-11137861)
chr3 (242-316)||(47495550-47495624)
chr3 (241-351)||(48962340-48962450)
chr3 (112-316)||(26952413-26952628)
chr3 (253-351)||(20826343-20826442)
chr3 (112-219)||(37333183-37333290)
chr3 (162-250)||(44542904-44542993)
chr3 (242-351)||(10046349-10046456)
chr3 (241-307)||(47864916-47864982)
chr3 (356-450)||(20974937-20975031)
chr3 (242-342)||(46909805-46909905)
chr3 (358-450)||(20961023-20961115)
chr3 (112-191)||(18090373-18090452)
chr3 (266-354)||(44543187-44543275)
chr3 (172-303)||(51370374-51370516)
chr3 (251-311)||(47342476-47342537)
chr3 (112-222)||(27371695-27371806)
chr3 (127-221)||(1102812-1102906)
chr3 (355-413)||(34743892-34743950)
chr3 (261-334)||(40891386-40891458)
chr3 (269-349)||(19554767-19554846)
[»] chr8 (24 HSPs)
chr8 (136-350)||(43429346-43429578)
chr8 (101-351)||(7186184-7186446)
chr8 (161-354)||(6148266-6148472)
chr8 (112-339)||(37127512-37127751)
chr8 (129-316)||(41407222-41407421)
chr8 (242-354)||(1597967-1598079)
chr8 (259-354)||(42845328-42845423)
chr8 (113-332)||(40216364-40216594)
chr8 (195-351)||(20765693-20765859)
chr8 (256-351)||(3346678-3346773)
chr8 (112-221)||(8845566-8845675)
chr8 (125-291)||(39949559-39949742)
chr8 (124-234)||(42845224-42845335)
chr8 (242-311)||(43417776-43417845)
chr8 (453-613)||(4970238-4970398)
chr8 (242-340)||(3692020-3692118)
chr8 (355-407)||(43073565-43073617)
chr8 (261-316)||(40978833-40978888)
chr8 (242-354)||(34474262-34474376)
chr8 (355-427)||(41767615-41767687)
chr8 (355-427)||(41773640-41773712)
chr8 (356-400)||(43074597-43074641)
chr8 (267-316)||(23629609-23629658)
chr8 (253-281)||(38528053-38528081)
[»] chr5 (11 HSPs)
chr5 (129-351)||(23418887-23419113)
chr5 (124-351)||(16561764-16562002)
chr5 (167-311)||(10667363-10667519)
chr5 (242-339)||(35377797-35377894)
chr5 (113-342)||(27903561-27903800)
chr5 (112-216)||(43100926-43101030)
chr5 (95-291)||(19279421-19279629)
chr5 (99-221)||(9622357-9622479)
chr5 (253-311)||(7211394-7211453)
chr5 (267-351)||(5422989-5423072)
chr5 (253-293)||(6783515-6783555)
[»] chr6 (15 HSPs)
chr6 (112-351)||(32183784-32184035)
chr6 (112-340)||(521172-521413)
chr6 (127-351)||(15489400-15489632)
chr6 (112-351)||(13185458-13185708)
chr6 (127-351)||(15134873-15135114)
chr6 (161-308)||(15611538-15611695)
chr6 (175-354)||(5188149-5188330)
chr6 (242-340)||(22747107-22747205)
chr6 (118-354)||(3611033-3611275)
chr6 (127-348)||(20969603-20969837)
chr6 (127-351)||(21208176-21208409)
chr6 (242-338)||(1040406-1040503)
chr6 (121-307)||(2912698-2912897)
chr6 (97-191)||(22746967-22747060)
chr6 (355-420)||(20560930-20560995)
[»] chr1 (39 HSPs)
chr1 (112-351)||(29700961-29701210)
chr1 (172-351)||(50378148-50378339)
chr1 (102-354)||(33016375-33016635)
chr1 (101-339)||(8259319-8259569)
chr1 (241-354)||(15342711-15342824)
chr1 (167-351)||(50377773-50377968)
chr1 (242-348)||(32714119-32714225)
chr1 (127-351)||(16255303-16255538)
chr1 (241-351)||(25388927-25389037)
chr1 (242-351)||(20381078-20381187)
chr1 (242-338)||(5959226-5959322)
chr1 (243-351)||(14625104-14625212)
chr1 (240-339)||(48379606-48379705)
chr1 (129-351)||(24120196-24120430)
chr1 (99-340)||(51776541-51776793)
chr1 (127-291)||(4085533-4085699)
chr1 (251-351)||(9693883-9693983)
chr1 (112-316)||(12140775-12140989)
chr1 (355-450)||(28533779-28533874)
chr1 (112-233)||(47024316-47024439)
chr1 (174-292)||(18236431-18236556)
chr1 (124-351)||(39923268-39923496)
chr1 (453-582)||(6345495-6345624)
chr1 (112-221)||(9694055-9694164)
chr1 (251-354)||(48941396-48941500)
chr1 (253-316)||(33737187-33737250)
chr1 (130-221)||(42693481-42693572)
chr1 (101-191)||(43728626-43728716)
chr1 (98-191)||(14624964-14625057)
chr1 (283-351)||(26450889-26450956)
chr1 (112-159)||(25389755-25389802)
chr1 (129-228)||(32714249-32714346)
chr1 (253-351)||(42693331-42693430)
chr1 (112-191)||(48379483-48379561)
chr1 (242-288)||(26451808-26451854)
chr1 (256-302)||(34312686-34312732)
chr1 (267-348)||(43728463-43728543)
chr1 (262-302)||(1243774-1243814)
chr1 (129-250)||(33737244-33737366)
[»] chr2 (27 HSPs)
chr2 (130-351)||(7315196-7315430)
chr2 (95-325)||(25322801-25323042)
chr2 (101-244)||(9548462-9548607)
chr2 (242-356)||(38935243-38935357)
chr2 (242-351)||(9032532-9032641)
chr2 (253-339)||(5732721-5732807)
chr2 (241-316)||(15464031-15464106)
chr2 (355-457)||(15075156-15075258)
chr2 (355-450)||(14243995-14244090)
chr2 (99-354)||(19494728-19494974)
chr2 (246-349)||(20638589-20638692)
chr2 (242-342)||(840149-840249)
chr2 (366-440)||(34404992-34405066)
chr2 (96-208)||(9032696-9032808)
chr2 (270-339)||(14169938-14170007)
chr2 (117-221)||(38935043-38935148)
chr2 (355-455)||(13646082-13646182)
chr2 (355-455)||(13652091-13652191)
chr2 (356-491)||(15073979-15074127)
chr2 (356-421)||(17640255-17640320)
chr2 (251-303)||(22705667-22705719)
chr2 (99-156)||(5732555-5732612)
chr2 (99-156)||(5803073-5803130)
chr2 (243-292)||(33047867-33047916)
chr2 (355-400)||(43284586-43284631)
chr2 (472-529)||(43284687-43284744)
chr2 (256-356)||(43652645-43652745)
[»] scaffold1940 (1 HSPs)
scaffold1940 (99-351)||(545-794)
[»] scaffold0069 (1 HSPs)
scaffold0069 (242-351)||(60867-60976)
[»] scaffold0466 (1 HSPs)
scaffold0466 (242-351)||(214-323)
[»] scaffold0355 (1 HSPs)
scaffold0355 (242-351)||(2616-2725)
[»] scaffold0001 (2 HSPs)
scaffold0001 (99-219)||(428281-428400)
scaffold0001 (251-281)||(428448-428478)
[»] scaffold0039 (2 HSPs)
scaffold0039 (242-340)||(94182-94279)
scaffold0039 (167-221)||(101626-101680)
[»] scaffold0006 (1 HSPs)
scaffold0006 (242-351)||(178217-178326)
[»] scaffold0127 (1 HSPs)
scaffold0127 (253-351)||(22871-22970)
[»] scaffold0043 (1 HSPs)
scaffold0043 (127-220)||(71668-71762)
[»] scaffold0332 (1 HSPs)
scaffold0332 (297-354)||(4405-4462)


Alignment Details
Target: chr4 (Bit Score: 561; Significance: 0; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 16 - 632
Target Start/End: Complemental strand, 3232952 - 3232336
Alignment:
Q  16 ataacaatagttgctcctataatatgaattcttgctcaaattgcactttttaattgtttttgaatgctcatcataatgctcactaagaccatatataatg 115  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3232952 ataacaatagttgttcctataatatgaattcttgctcaaattgcactttttaattgtttttgaatgctcatcataatgctcactaagaccatatataatg 3232853  T
Q  116 gtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccct 215  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3232852 gtgggtgattaacctatttagcaccacattaaattagcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccct 3232753  T
Q  216 ctctcttcattttttgttggtcctatttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||    
T  3232752 ctctcttcattttttgttggtcctatttaataaattaaataaattttgttgaaatataatgatatagaattatttgtgggacctatttaataatttcttt 3232653  T
Q  316 tcaagtgttggattggagaaaattggtacttattaaatacttaaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccctgtacttgt 415  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3232652 tgaagtgttggattggagaaaattggtacttattaaatacttaaatatgtttatagtccctgcaaatagggctcgtttgaatttttgtcccagtacttgt 3232553  T
Q  416 taatccccccaaaatttccttgcaattattaatcacttaattacttttgtttgcatatgtgtcaagtgattacttatatggcactgacgtggctctagct 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3232552 taatccccccaaaatttccttgcaattattaatcacttaattacttttgtttgcatatgtgtcaagtgattacttatatggcactgacgtggctctagct 3232453  T
Q  516 gactgggtaaggacctcactgactcagctttttgaacttgaacttctcattttgcccttaatgaaaccagaggtgtgcgaattgaccaaaatacccctag 615  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||    
T  3232452 gactgggtaaggacctcgctggctcagctttttgaacttgaacttctcattttgcccttgatgaaactagaggtgtgcgaattgaccaaaatacctctag 3232353  T
Q  616 cttcccaccaccctatg 632  Q
    |||||||||||||||||    
T  3232352 cttcccaccaccctatg 3232336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 124 - 351
Target Start/End: Complemental strand, 36284753 - 36284512
Alignment:
Q  124 ttaacctatttagcaccaca--ttaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctct 221  Q
    ||||||||||||||||||||  |||||| ||||||  | ||||| ||||||| ||||||||  |||||||||||||||  ||||||| ||||||||||||    
T  36284753 ttaacctatttagcaccacacattaaataggcacctccattgtggagtaaaacatatgggtatctatggagaagggtgcctatggaagcaccctctctct 36284654  T
Q  222 --tcattttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataat 309  Q
      |||||||||||||||| ||||||||||||          |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36284653 cttcattttttgttggtcatatttaataaatcttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtgggacctatttaataat 36284554  T
Q  310 ttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
    || |||| ||||||||  ||||||||||||||| ||||||||    
T  36284553 ttcttttgaagtgttgtgttggagaaaattggttcttattaa 36284512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 124 - 351
Target Start/End: Complemental strand, 46433295 - 46433058
Alignment:
Q  124 ttaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctct-- 221  Q
    ||||||||||||||||||| |||||| || |||| | ||||| || || |||||||||||||||||||||||||| | ||||||| ||||||||||||      
T  46433295 ttaacctatttagcaccactttaaataggtaccc-cattgtggagcaatatatatgggtgcctatggagaagggtagctatggaagcaccctctctctct 46433197  T
Q  222 tcattttttgttggtcctatt---------taataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataattta 312  Q
    ||||||||||||| |   |||         |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46433196 tcattttttgttgatttaattaataaatcttaatgaattaaataaattttgttgaaatgtaatgatatagaattatttgtgggacctatttaataattta 46433097  T
Q  313 ttttcaagtgttggattggagaaaattggtacttattaa 351  Q
    |||| | ||||||||||||||||||||| ||||||||||    
T  46433096 ttttgaggtgttggattggagaaaattgatacttattaa 46433058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 112 - 351
Target Start/End: Original strand, 16529839 - 16530089
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca 211  Q
    |||||||| || || ||||||||||||||||||||||| ||||||| | ||||| |||| |||| ||||||| |||||||||| ||||| ||||||| ||    
T  16529839 aatggtgggtgcttcacctatttagcaccacattaaataggcacccccattgtggagtataatacatgggtggctatggagaatggtggctatggaagca 16529938  T
Q  212 cc--ctctctcttcattttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaattatttgtaggacct 299  Q
    ||  ||||||||||||||||  | |||||  ||||||||||          ||||||||||||||||||||||||||||||| |||||||||| |||| |    
T  16529939 ccatctctctcttcatttttcatgggtcccttttaataaatcttaataaaataaataaattttgttgaaatgtaatgatataaaattatttgtgggactt 16530038  T
Q  300 atttaataatttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
    |||||||||||| |||| | | | ||| ||||||||||||||| ||||||||    
T  16530039 atttaataatttcttttaaggagctgg-ttggagaaaattggtgcttattaa 16530089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 112 - 351
Target Start/End: Original strand, 56192223 - 56192474
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca 211  Q
    |||||||| || || ||||||||| ||||||||||||| ||||||| ||||||| ||||||||||||||||| |||| ||||||||||| |||| || ||    
T  56192223 aatggtgggtgctttacctatttaacaccacattaaataggcacccccgttgtggagtaaaatatatgggtgtctatagagaagggtggctatgaaagca 56192322  T
Q  212 cc--ctctctcttcattttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaattatttgtaggacct 299  Q
    ||  |||||||| ||||||||||  ||   |||||||||||          |||| ||||||||||||| ||| ||||||||||||||| ||| | ||||    
T  56192323 ccctctctctctccattttttgtgagtttcatttaataaatcttaataaaataaagaaattttgttgaattgtgatgatatagaattatatgtggaacct 56192422  T
Q  300 atttaataatttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
    |||||||||||| |||| | ||||||| ||||||||||||||| ||||||||    
T  56192423 atttaataatttcttttgaggtgttgggttggagaaaattggtgcttattaa 56192474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 112 - 354
Target Start/End: Original strand, 36755121 - 36755374
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca 211  Q
    |||||||| || || | ||||||||||||| ||||||| | ||||  | ||||| |||| |||||||||||| |||||||||||||||| ||||||| ||    
T  36755121 aatggtgggtgcttcatctatttagcaccatattaaatagacacctccattgtggagtataatatatgggtggctatggagaagggtggctatggaagca 36755220  T
Q  212 ccctctctct--tcattttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaattatttgtaggacct 299  Q
    ||||||||||  ||||||||    ||||  |||||||||||          ||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  36755221 ccctctctctcttcatttttcacgggtcacatttaataaatcttaataaaataaataaattttgttgaaatgtaatgatataaaattatttgtaggactt 36755320  T
Q  300 atttaataatttattttcaagtgttggattggagaaaattggtacttattaaata 354  Q
    |||||||||||| | || | ||||||| || |||||||||||| |||||||||||    
T  36755321 atttaataattt-tattgaggtgttgggttagagaaaattggtgcttattaaata 36755374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 127 - 351
Target Start/End: Complemental strand, 3534108 - 3533873
Alignment:
Q  127 acctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctcttcatt 226  Q
    |||||||||||| |||||||||| ||||||| | ||||| || | |||||||||||| ||||||||| |||||| |||| || ||| |||||||||||||    
T  3534108 acctatttagcatcacattaaataggcacccccattgtggagaataatatatgggtggctatggagatgggtggctatgaaagcactctctctcttcatt 3534009  T
Q  227 ttttgttggtcctatttaataaat----------taaataaattttgttgaaa-tgtaatgatatagaattatttgtaggacctatttaataatttattt 315  Q
    |||  | ||||  |||||||||||          ||||||||| ||||  ||| |||||||||||| |||||||||| ||||||||||||||||||||||    
T  3534008 tttcatgggtctcatttaataaatcttaataaaataaataaatattgtaaaaaatgtaatgatataaaattatttgtgggacctatttaataatttattt 3533909  T
Q  316 tcaagtgttggattggagaaaattggtacttattaa 351  Q
    | | ||||||| |||||||||| |||| ||||||||    
T  3533908 tgaggtgttgggttggagaaaaatggtgcttattaa 3533873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 99 - 311
Target Start/End: Complemental strand, 38476366 - 38476142
Alignment:
Q  99 taagaccatatataatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggt 198  Q
    ||||||||| ||||||||||| || || ||||||||||||||||||||||| | ||||| | || ||||||| ||||||||||||  ||||||||| |||    
T  38476366 taagaccatctataatggtgggtgcttcacctatttagcaccacattaaatagacacccccattatgaagtataatatatgggtggttatggagaaaggt 38476267  T
Q  199 ggttatggaatcac--cctctctcttcattttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaatt 286  Q
    |||||||||| |||   ||||||||||||||||  | || |  |||||||||||          ||||||||||||||||||||||||||||||| ||      
T  38476266 ggttatggaagcacgttctctctcttcatttttcatgggccacatttaataaatcttaataaaataaataaattttgttgaaatgtaatgatataaaaaa 38476167  T
Q  287 atttgtaggacctatttaataattt 311  Q
    |||| | ||||||||||||||||||    
T  38476166 atttatgggacctatttaataattt 38476142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 241 - 339
Target Start/End: Complemental strand, 13205638 - 13205540
Alignment:
Q  241 tttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaatt 339  Q
    ||||||||||||||||||||||||||||||||||| ||||  |||||||||| |||| ||||||||||||| |||| | ||||||| ||||||||||||    
T  13205638 tttaataaattaaataaattttgttgaaatgtaataatatcaaattatttgtgggacttatttaataatttcttttgaggtgttgggttggagaaaatt 13205540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 242 - 338
Target Start/End: Complemental strand, 44516025 - 44515929
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaat 338  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||| || ||| |||||||||||||| |||| | ||| ||| |||||||||||    
T  44516025 ttaataaaataaataaattttgttgaaatgtaatgatataaaattattagtgggatctatttaataatttcttttaaggtgctgggttggagaaaat 44515929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 354 - 453
Target Start/End: Original strand, 13231240 - 13231339
Alignment:
Q  354 acttaaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccctgtacttgttaatccccccaaaatttccttgcaattattaatcactt 453  Q
    |||||||||||||||||| ||| ||||||| | |||  ||||||||| ||||||||||||  |||||| |||||||||||| ||||||||||||||||||    
T  13231240 acttaaatatgtctatagccccagcaaataagactcagttgaattttagtccctgtacttactaatcctcccaaaatttccctgcaattattaatcactt 13231339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 112 - 342
Target Start/End: Complemental strand, 55693172 - 55692926
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca 211  Q
    |||| |||||| || | ||||||||||||||||||||| |||| | || ||||| |||| |||  || |||| |||| ||||||||||| ||||||| ||    
T  55693172 aatgatggatgcttcatctatttagcaccacattaaataggcatcttcattgtggagtataatgcattggtgactatagagaagggtggctatggaagca 55693073  T
Q  212 ccctctctct---tcat--tttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaa-ttatttgtagg 295  Q
    ||||||||||   || |  |||||  ||||||  || |||||||          ||||||||||||||||||||||||||||||| || |||||||| ||    
T  55693072 ccctctctctctctcttcatttttcatggtcccgttgaataaatcttaataacataaataaattttgttgaaatgtaatgatataaaaattatttgtggg 55692973  T
Q  296 acctatttaataatttattttcaagtgttggattggagaaaattggt 342  Q
    |||||||||||||||| |||| |  || ||| |||||||||||||||    
T  55692972 acctatttaataatttcttttaagatgctgggttggagaaaattggt 55692926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 256 - 347
Target Start/End: Complemental strand, 12832421 - 12832330
Alignment:
Q  256 aaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtactta 347  Q
    |||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| |||| | |||||||   ||||||||||||| ||||    
T  12832421 aaattttgttgaaatgtaataatataaaattatttgtcggacctatttaataatttctttttaggtgttgggccggagaaaattggtgctta 12832330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 127 - 337
Target Start/End: Complemental strand, 29845186 - 29844982
Alignment:
Q  127 acctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctct--cttca 224  Q
    ||||||||| ||||||||||||| || |||| ||||||| || | |||||||| ||| | || ||||||||||| ||||||| ||||||||||  |||||    
T  29845186 acctatttaacaccacattaaataggtacccccgttgtggagaataatatatgcgtgac-attgagaagggtggctatggaagcaccctctctgtcttca 29845088  T
Q  225 ttttttgttggtcctatttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgtt 324  Q
    ||||||  |        |||||||| ||||||||| |||   ||||||||||||||  ||||||||||  |||||||||||||||||||||| |  || |    
T  29845087 ttttttaatc-------ttaataaaataaataaatgttggcaaaatgtaatgatatcaaattatttgtgagacctatttaataatttattttgagatgct 29844995  T
Q  325 ggattggagaaaa 337  Q
    || ||||||||||    
T  29844994 gggttggagaaaa 29844982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 251 - 340
Target Start/End: Complemental strand, 25197367 - 25197277
Alignment:
Q  251 taaataaatttt-gttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattg 340  Q
    |||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||   ||||||| |||||||||||||    
T  25197367 taaataaattttagttgaaatgtaatgatatggaattatttgtgggacctatttagtaatttcttttgtggtgttgggttggagaaaattg 25197277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 242 - 351
Target Start/End: Complemental strand, 45549132 - 45549023
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattgg 341  Q
    |||||||| ||||||||| ||||| ||||||||||||||| |||||| |   |||| |||||||||||||||||| | ||| ||| |||||||||| |||    
T  45549132 ttaataaaataaataaatgttgttaaaatgtaatgatataaaattatcttggggacttatttaataatttattttaaggtgctgggttggagaaaagtgg 45549033  T
Q  342 tacttattaa 351  Q
    | ||||||||    
T  45549032 tgcttattaa 45549023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 246 - 349
Target Start/End: Original strand, 17999062 - 17999165
Alignment:
Q  246 taaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtact 345  Q
    |||| ||||||||||||||  ||||||||||||||||| ||||||||| ||||||||||||||||| |||| | ||  | | || |||||||||||| ||    
T  17999062 taaaataaataaattttgtaaaaatgtaatgatatagagttatttgtaagacctatttaataatttcttttgaggtactaggttagagaaaattggtgct 17999161  T
Q  346 tatt 349  Q
    ||||    
T  17999162 tatt 17999165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 54184048 - 54183974
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttatttt 316  Q
    |||||||  |||||||| |||||||||||||||||||||| |||||||| | |||||||||||||||||| ||||    
T  54184048 ttaataatataaataaaatttgttgaaatgtaatgatatataattatttatgggacctatttaataatttttttt 54183974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 259 - 316
Target Start/End: Complemental strand, 15024613 - 15024556
Alignment:
Q  259 ttttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttatttt 316  Q
    |||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||    
T  15024613 ttttgttgaaatataatgatattgaattatttgtgggacctatttaataatttatttt 15024556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 358 - 453
Target Start/End: Complemental strand, 13232784 - 13232689
Alignment:
Q  358 aaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccctgtacttgttaatccccccaaaatttccttgcaattattaatcactt 453  Q
    |||||||| ||||||||||||||||||| || | ||||||||| |||| |||||||| ||||||  |||   ||||||||||||| ||||||||||    
T  13232784 aaatatgtttatagtccctgcaaataggccttggttgaattttagtccatgtacttgctaatcctaccattttttccttgcaattgttaatcactt 13232689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 112 - 351
Target Start/End: Original strand, 37996914 - 37997161
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca 211  Q
    ||||||||||| ||   ||||||||||||||||||||| | || |||| ||||| |||| ||||||||| |||  || ||| ||||||| || |||| ||    
T  37996914 aatggtggatgcttcttctatttagcaccacattaaatagacatcctcattgtggagtataatatatggttgctaatcgaggagggtggctacggaagca 37997013  T
Q  212 ccctctctcttcattttttgttggtcctatttaataaatta----------aataaattttgttgaaatgtaatgatatagaattatttgtaggacctat 301  Q
    | ||||||||||||||||| | ||||  ||||||||| ||           ||||||||||||||||||| ||||||| | || | ||||| |||| |||    
T  37997014 ctctctctcttcatttttt-tgggtctcatttaataagtttttgtaaaatgaataaattttgttgaaatgaaatgataca-aagtttttgtgggacatat 37997111  T
Q  302 ttaataatttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
    || ||||||| |||| |  || ||| ||| ||||||||||| ||||||||    
T  37997112 tttataatttcttttgagatgctgggttgaagaaaattggtgcttattaa 37997161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 99 - 195
Target Start/End: Complemental strand, 12832525 - 12832429
Alignment:
Q  99 taagaccatatataatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaag 195  Q
    ||||||||| || |||||||| || || ||||||||||||||||||||||| |||||||   ||||| |||| |||| ||||||| ||||| |||||    
T  12832525 taagaccatctacaatggtgggtgcttcacctatttagcaccacattaaatcggcacccctattgtggagtataatacatgggtggctatgaagaag 12832429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 426
Target Start/End: Original strand, 10128708 - 10128779
Alignment:
Q  355 cttaaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccctgtacttgttaatcccccca 426  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||  ||| |||||||  |||||| ||||    
T  10128708 cttaaatatgtttatagtccctgcaaatagggttcgtttgaattttactccatgtacttactaatcctccca 10128779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 354
Target Start/End: Complemental strand, 44707795 - 44707558
Alignment:
Q  127 acctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctcttcatt 226  Q
    ||||||||||||| | ||||||| | || | || ||||| |||| ||||| ||| |||||| | |||||||||  ||| ||| |||||| ||||| || |    
T  44707795 acctatttagcactatattaaatagacatcatcattgtggagtataatatttggatgcctaagaagaagggtgactatagaaacaccctttctctccact 44707696  T
Q  227 ttttgttggtcctatttaataaat----------taaataaatttt-gttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattt 315  Q
    |||||| |  || |||||||||||          |||||||||||| ||||||||||||||||||| |||||||||| ||| ||||||  |||||| |||    
T  44707695 ttttgtagaccccatttaataaatcataatgaaataaataaatttttgttgaaatgtaatgatatataattatttgtgggatctattttgtaatttcttt 44707596  T
Q  316 tcaagtgttggattggagaaaattggtacttattaaata 354  Q
    |   ||| ||| ||||||||||||| | |||| ||||||    
T  44707595 tgtcgtgctgg-ttggagaaaattgatgcttagtaaata 44707558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 13205774 - 13205684
Alignment:
Q  99 taagaccatatataatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatg 189  Q
    |||||||||  | |||||||| || ||||||||||||| |||||||||||| | || |  | ||||||||||||||||||||||| |||||    
T  13205774 taagaccatccacaatggtgggtgcttaacctatttagtaccacattaaatagacatctccattgtgaagtaaaatatatgggtgtctatg 13205684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 427
Target Start/End: Complemental strand, 35602539 - 35602467
Alignment:
Q  355 cttaaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccctgtacttgttaatccccccaa 427  Q
    ||||||||||| |  |||||||||||||||| |||| ||||||||| ||||||||||||  |||||| |||||    
T  35602539 cttaaatatgtgtccagtccctgcaaataggcctcggttgaattttagtccctgtacttactaatcctcccaa 35602467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 354 - 450
Target Start/End: Complemental strand, 53753517 - 53753421
Alignment:
Q  354 acttaaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccctgtacttgttaatccccccaaaatttccttgcaattattaatca 450  Q
    |||||||||||| | |  |||||  |||||| ||||||||||||||| |||||| ||||| ||||||| ||||||| || | |||||||| ||||||    
T  53753517 acttaaatatgtgtttcatccctataaatagtgctcgtttgaattttcgtccctatacttattaatcctcccaaaactttcctgcaattactaatca 53753421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 342
Target Start/End: Complemental strand, 19477291 - 19477216
Alignment:
Q  267 aaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggt 342  Q
    |||||||||| |||||| |||||||| || |||| ||||||||||||||| | | ||||||||  | |||||||||    
T  19477291 aaatgtaatggtatagagttatttgtggggcctagttaataatttattttgaggggttggattaaaaaaaattggt 19477216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 25197523 - 25197401
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca 211  Q
    |||||||| || || |||||||||| |||  | ||||||||||||| | ||||| |||| ||||| | ||||| ||| ||||| ||||| |||||||  |    
T  25197523 aatggtgggtgcttcacctatttagaaccgtaataaattggcacccccattgtggagtataatatttaggtgcttatagagaatggtggctatggaagga 25197424  T
Q  212 ccctct--ctcttcattttttgt 232  Q
    ||||||  ||||||| |||||||    
T  25197423 ccctctctctcttcactttttgt 25197401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 351
Target Start/End: Original strand, 43334691 - 43334790
Alignment:
Q  253 aataaattttgttgaaa-tgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
    ||||||||||||| ||| |||||||||||||| |||||| |  |||||| |||||||||| |||| |  |||||| ||  ||||||||| | ||||||||    
T  43334691 aataaattttgttaaaaatgtaatgatatagagttatttatgagacctaattaataatttcttttgagatgttgggtttaagaaaattgatgcttattaa 43334790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 43334539 - 43334629
Alignment:
Q  129 ctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctct 219  Q
    ||||||||||||||||||||| |  | || ||||||| || | || |||||||||| ||| ||| ||||||| ||||||| ||| ||||||    
T  43334539 ctatttagcaccacattaaatagatatccccgttgtggagcataacatatgggtgcttatagaggagggtggctatggaagcactctctct 43334629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 372 - 450
Target Start/End: Original strand, 53752255 - 53752333
Alignment:
Q  372 tccctgcaaatagggctcgtttgaatttttgtccctgtacttgttaatccccccaaaatttccttgcaattattaatca 450  Q
    ||||||||||| ||||||||||||||||| ||| || |||||  |||||| ||||||  |||| |||| ||| ||||||    
T  53752255 tccctgcaaatggggctcgtttgaattttcgtctctatacttactaatcctcccaaaccttccctgcatttactaatca 53752333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 12691786 - 12691734
Alignment:
Q  356 ttaaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccctg 408  Q
    |||||||||||| | |||||||||||||  | || ||||||||||||||||||    
T  12691786 ttaaatatgtctttcgtccctgcaaatataggtcatttgaatttttgtccctg 12691734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 28992600 - 28992540
Alignment:
Q  251 taaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataattt 311  Q
    |||||||| |||| |  ||| ||||||||||||||||||||| | ||||||||| ||||||    
T  28992600 taaataaaatttggttgaatataatgatatagaattatttgtggaacctatttagtaattt 28992540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 6e-54; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 101 - 354
Target Start/End: Original strand, 27164135 - 27164395
Alignment:
Q  101 agaccatatataatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtgg 200  Q
    ||||||| ||||||| | | || |||||||||||| ||| ||||||||| |||||   | || || ||||||||||||| |||||||| ||||| |||||    
T  27164135 agaccatttataatgataggtgcttaacctatttaacactacattaaataggcacatccattatggagtaaaatatatgagtgcctatagagaatggtgg 27164234  T
Q  201 ttatggaatcacc--ctctctcttcatttttt-gttggtc---ctatttaataaatta-aataaattttgttgaaatgtaatgatatagaattatttgta 293  Q
    |||||||| ||||  |||||||||| |||||| |||||||   ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  27164235 ttatggaaacaccttctctctcttcttttttttgttggtcgtcctatttaataaatcataataaattttgttgaaatgtaatgatatagaattatttgta 27164334  T
Q  294 ggacctatttaataatttattttcaagtgttggattggagaaaattggtacttattaaata 354  Q
     |||||||||| |||||| |||| | ||||||| |||||||||||||||  ||||||||||    
T  27164335 agacctatttagtaatttcttttgaggtgttgggttggagaaaattggtgtttattaaata 27164395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 124 - 351
Target Start/End: Complemental strand, 34519523 - 34519284
Alignment:
Q  124 ttaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctct-- 221  Q
    ||||| |||||||||||||||||||| ||||| | | || || |||||||||| ||||||||||||||||| ||||| ||||||| ||||||||||||      
T  34519523 ttaacgtatttagcaccacattaaataggcactcccattatggagtaaaatatttgggtgcctatggagaatggtggctatggaagcaccctctctctct 34519424  T
Q  222 tcattttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataattt 311  Q
    ||||||||     ||||||||||||||||          || |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  34519423 tcatttttcacaagtcctatttaataaatcttaataaactatataaattttgttaaaatgtaatgatatagaattatttgtgggacctatttaataattt 34519324  T
Q  312 attttcaagtgttggattggagaaaattggtacttattaa 351  Q
     |||| | ||| |||| |||||||||||||| ||||||||    
T  34519323 cttttgaggtgctggactggagaaaattggtgcttattaa 34519284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 99 - 351
Target Start/End: Complemental strand, 1706663 - 1706399
Alignment:
Q  99 taagaccatatataatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggt 198  Q
    |||||||||  | |||||||| || || | |||||  |||||||||||||| ||||||| | || || |||| |||| ||||||| ||| |||||| |||    
T  1706663 taagaccattaacaatggtgggtgcttcatctattcggcaccacattaaataggcacccccattatggagtataatacatgggtggctacggagaatggt 1706564  T
Q  199 ggttatggaatcaccctctctct--tcattttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaatt 286  Q
    |||||||||| ||||||||||||  |||||||   | |||||||||||||||||          ||||||||||||||||||||||||||||||| ||||    
T  1706563 ggttatggaagcaccctctctctcttcattttccatgggtcctatttaataaatattaataaaataaataaattttgttgaaatgtaatgatataaaatt 1706464  T
Q  287 atttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
    |||||| |||||||||||||||||| |||| | ||| ||||||||||||||||| | ||||||||    
T  1706463 atttgtgggacctatttaataatttcttttaaggtgctggattggagaaaattgatgcttattaa 1706399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 124 - 351
Target Start/End: Original strand, 965253 - 965495
Alignment:
Q  124 ttaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca--ccctctctct 221  Q
    ||||| |||||||||||||||||||| ||||||| | ||||| ||||||||||||||||| ||||||||||  |||  ||||||| ||  |||||| |||    
T  965253 ttaacatatttagcaccacattaaataggcacccccattgtggagtaaaatatatgggtgtctatggagaatagtgactatggaagcaccccctctgtct 965352  T
Q  222 tcattttttgttggtcctat----------ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaata---a 308  Q
    |||||||| || ||||||||          |||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||   |    
T  965353 tcatttttcgtgggtcctatttaataaatcttaataaattaaataaattttgttgaaatgtaatgatataaaattatttgtggaacctatttaataatta 965452  T
Q  309 tttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
    ||| |||| | ||||||| ||||||||||| |||  |||||||    
T  965453 tttcttttgaggtgttgggttggagaaaatgggtgtttattaa 965495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 112 - 351
Target Start/End: Original strand, 12287089 - 12287338
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca 211  Q
    |||||||| || || ||||||||| ||||||||||||| ||||||  | ||||| |||| || | ||| ||| ||||  |||||||||| |||| || ||    
T  12287089 aatggtgggtgctttacctatttaacaccacattaaataggcacctccattgtggagtataagacatgagtgtctatcaagaagggtggctatgaaagca 12287188  T
Q  212 ccctctctcttcattttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaattatttgtaggacctat 301  Q
    ||||||||||||||||||  | | ||  |||||||||||          | ||||||||||||||||||||||||||||| |||||||||| |||| |||    
T  12287189 ccctctctcttcatttttcatggatctcatttaataaatcttaataaaatgaataaattttgttgaaatgtaatgatataaaattatttgttggacttat 12287288  T
Q  302 ttaataatttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
    |||||||||| |||| | ||| ||||||||||||||||||| || |||||    
T  12287289 ttaataatttcttttaaggtgctggattggagaaaattggtgctcattaa 12287338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 133 - 351
Target Start/End: Complemental strand, 41966331 - 41966103
Alignment:
Q  133 ttagcaccacatt-aaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctcttcattttttg 231  Q
    ||||||||||||| |||| ||||||| | ||||||||||||||| | |||||||||||||||||| ||| ||||||| |||||| | | |  ||||| ||    
T  41966331 ttagcaccacatttaaataggcacccacattgtgaagtaaaataaacgggtgcctatggagaaggatggctatggaagcaccctatgtgtctattttatg 41966232  T
Q  232 ttggtcctattt----------aataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagt 321  Q
    ||||| ||||||          |||||||||||||| ||||||||||||||||||||||| |||||||| |  | ||||||||||||||| |||| | ||    
T  41966231 ttggttctattttataaatcttaataaattaaataa-ttttgttgaaatgtaatgatataaaattatttatgagtcctatttaataatttcttttgaggt 41966133  T
Q  322 gttggattggagaaaattggtacttattaa 351  Q
    ||||| ||||||||||||| | ||||||||    
T  41966132 gttgggttggagaaaattgatgcttattaa 41966103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 242 - 354
Target Start/End: Original strand, 1778782 - 1778893
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattgg 341  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||| |||| | ||||||||||||||||||||||    
T  1778782 ttaataaat-aaataaattttgttgaaatgtaatgatataaaattatttgtaggatcaatttaataatttcttttgaggtgttggattggagaaaattgg 1778880  T
Q  342 tacttattaaata 354  Q
    |  ||||||||||    
T  1778881 tgtttattaaata 1778893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 112 - 338
Target Start/End: Complemental strand, 35015979 - 35015741
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca 211  Q
    |||||||| || || | ||||||||||||| ||||||| ||||||||| ||||| |||| ||||||||| || |||| ||||| ||||| ||||||| ||    
T  35015979 aatggtgggtgtttcatctatttagcaccatattaaataggcaccctcattgtggagtataatatatggatggctatagagaatggtggctatggaagca 35015880  T
Q  212 ccctct--ctcttcattttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaattatttgtaggacct 299  Q
    ||||||  ||||||||||||| | ||||   ||||||||||          ||||||||||||||||||||||||| ||||| ||| |||  ||||||||    
T  35015879 ccctctctctcttcattttttatgggtctcttttaataaatcttaataaaataaataaattttgttgaaatgtaattatataaaataattcataggacct 35015780  T
Q  300 atttaataatttattttcaagtgttggattggagaaaat 338  Q
    ||||| |||||| |||| | ||| ||| |||||||||||    
T  35015779 atttagtaatttcttttaaggtgatgggttggagaaaat 35015741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 101 - 354
Target Start/End: Original strand, 1910963 - 1911226
Alignment:
Q  101 agaccatatataatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtgg 200  Q
    |||||||  |||||||||| || || ||||||||||||| | ||||||| | ||||||  |||||||||| |||| ||||||| ||| ||||||  ||||    
T  1910963 agaccatccataatggtgggtgcttcacctatttagcactatattaaatagacacccta-ttgtgaagtataatacatgggtggctacggagaatagtgg 1911061  T
Q  201 ttatggaatcaccctctctct-tcattttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaattatt 289  Q
     ||| |||||||||||||||| | ||||||  | ||||| | |||||||||          |||||||||||||||||||| |||| ||||| |||||||    
T  1911062 ctatagaatcaccctctctctcttatttttcatgggtcccagttaataaatcttaataaaataaataaattttgttgaaatataataatataaaattatt 1911161  T
Q  290 tgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtacttattaaata 354  Q
    ||| ||| |||||||||||||| |||| | |||||   ||||||||||||  |||||||||||||    
T  1911162 tgtgggatctatttaataatttcttttaaggtgttaagttggagaaaattaatacttattaaata 1911226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 242 - 338
Target Start/End: Complemental strand, 29235615 - 29235519
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaat 338  Q
    |||||||| |||||||||||| |||||||||||||||||| |||||||| ||||| |||||||||||||| |||| ||||| ||| |||||||||||    
T  29235615 ttaataaaataaataaattttattgaaatgtaatgatataaaattatttataggatctatttaataatttcttttgaagtgctgggttggagaaaat 29235519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 245 - 354
Target Start/End: Complemental strand, 4905195 - 4905086
Alignment:
Q  245 ataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtac 344  Q
    ||||||||||||||||||||||||||||||| ||||| | |||||||| |||||||||||||||||| | || |  || ||||||||||||||||  | |    
T  4905195 ataaattaaataaattttgttgaaatgtaataatataaatttatttgtgggacctatttaataatttctcttgagatgctggattggagaaaattaatgc 4905096  T
Q  345 ttattaaata 354  Q
    ||||||||||    
T  4905095 ttattaaata 4905086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 242 - 351
Target Start/End: Original strand, 6182620 - 6182729
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattgg 341  Q
    |||||||| ||||||||| ||||| ||||||||||||||| ||||||||||  |||||||||||||||||||||| | ||| ||| ||| |||||| |||    
T  6182620 ttaataaaataaataaatgttgttaaaatgtaatgatataaaattatttgtgagacctatttaataatttattttgaggtgctgggttgaagaaaagtgg 6182719  T
Q  342 tacttattaa 351  Q
    | ||||||||    
T  6182720 tgcttattaa 6182729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 242 - 339
Target Start/End: Complemental strand, 26576091 - 26575994
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaatt 339  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||| |  || |||||||||||||| |||| | |||||||||||| |||||||    
T  26576091 ttaataaaataaataaattttgttgaaatgtaatgatataaaattatttatgagatctatttaataatttcttttaaggtgttggattggtgaaaatt 26575994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 242 - 350
Target Start/End: Original strand, 33037368 - 33037476
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattgg 341  Q
    |||||||| ||||||||  ||||| ||||||||||||||| |||||||||| | ||||||||||||||||||||| | ||| ||| |||||||||| |||    
T  33037368 ttaataaaataaataaacgttgttaaaatgtaatgatataaaattatttgtggaacctatttaataatttattttgaggtgctgggttggagaaaagtgg 33037467  T
Q  342 tacttatta 350  Q
    | |||||||    
T  33037468 tgcttatta 33037476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 22527988 - 22528087
Alignment:
Q  122 gattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctct 221  Q
    |||||||||||| || |||||||||||| | ||| |   |||||||||| |||||| ||||||||||||||| |||||| ||||||| ||||||||||||    
T  22527988 gattaacctattcagaaccacattaaatagacactccaattgtgaagtataatatacgggtgcctatggagaggggtggatatggaagcaccctctctct 22528087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 251 - 338
Target Start/End: Complemental strand, 2485234 - 2485147
Alignment:
Q  251 taaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaat 338  Q
    |||||||||||| ||||||| |||||||||| ||||||||||  ||| ||||||||||||| |||| | ||||||  |||||||||||    
T  2485234 taaataaattttattgaaatttaatgatataaaattatttgtgagacatatttaataattttttttgaggtgttgagttggagaaaat 2485147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 112 - 250
Target Start/End: Complemental strand, 16706757 - 16706616
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca 211  Q
    |||||||| || || ||||||||||||||||||||||| ||||||| | ||||| |||| || |||||||||| ||||||| ||| ||| ||   || ||    
T  16706757 aatggtgggtgcttcacctatttagcaccacattaaataggcaccc-cattgtggagtataacatatgggtgcttatggaggaggatggctacaaaagca 16706659  T
Q  212 cc--ctctctcttca--ttttttgttggtcctatttaataaat 250  Q
    ||  |||||||||||  |||||||||||||  |||||||||||    
T  16706658 ccctctctctcttcattttttttgttggtctcatttaataaat 16706616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 112 - 250
Target Start/End: Complemental strand, 17680993 - 17680852
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca 211  Q
    |||||||| || || ||||||||||||||||||||||| ||||||| | ||||| |||| || |||||||||| ||||||| ||| ||| ||   || ||    
T  17680993 aatggtgggtgcttcacctatttagcaccacattaaataggcaccc-cattgtggagtataacatatgggtgcttatggaggaggatggctacaaaagca 17680895  T
Q  212 cc--ctctctcttca--ttttttgttggtcctatttaataaat 250  Q
    ||  |||||||||||  |||||||||||||  |||||||||||    
T  17680894 ccctctctctcttcattttttttgttggtctcatttaataaat 17680852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 356 - 450
Target Start/End: Complemental strand, 39527178 - 39527084
Alignment:
Q  356 ttaaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccctgtacttgttaatccccccaaaatttccttgcaattattaatca 450  Q
    |||||||||| | ||||||||| ||||||||  |||||||||||| ||||||||||||  ||||||  | |||| |||| |||||||| ||||||    
T  39527178 ttaaatatgtgtttagtccctgtaaatagggtccgtttgaattttcgtccctgtacttactaatccttcaaaaacttccctgcaattactaatca 39527084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 242 - 311
Target Start/End: Original strand, 22528123 - 22528191
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataattt 311  Q
    |||||||||||||||||||||||||||||| ||||||||| |||| |||   |||||| |||||||||||    
T  22528123 ttaataaattaaataaattttgttgaaatgaaatgatatataattcttt-agggacctgtttaataattt 22528191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 453
Target Start/End: Original strand, 39525678 - 39525776
Alignment:
Q  355 cttaaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccctgtacttgttaatccccccaaaatttccttgcaattattaatcactt 453  Q
    ||||||||||| | || ||||||||||||||   |||||||||||| |||| |||||||  ||||||   ||||| |||| |||||||| |||||||||    
T  39525678 cttaaatatgtgtttaatccctgcaaataggatccgtttgaattttcgtccttgtacttactaatcctttcaaaacttccctgcaattactaatcactt 39525776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 47066184 - 47066134
Alignment:
Q  99 taagaccatatataatggtggatgattaacctatttagcaccacattaaat 149  Q
    |||||||||  ||||||||||||| |||||||||||| |||||||||||||    
T  47066184 taagaccattcataatggtggatgcttaacctatttaacaccacattaaat 47066134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 455
Target Start/End: Original strand, 47733022 - 47733122
Alignment:
Q  355 cttaaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccctgtacttgttaatccccccaaaatttccttgcaattattaatcactta 454  Q
    ||||||||||| |  |||||||||||||||| |||  ||||||||| ||||||||| ||  |||||| |||||  |  || ||||| |||||||||||||    
T  47733022 cttaaatatgtgtccagtccctgcaaataggcctcagttgaattttagtccctgtaattactaatcctcccaatttacccctgcaaatattaatcactta 47733121  T
Q  455 a 455  Q
    |    
T  47733122 a 47733122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 455
Target Start/End: Complemental strand, 47739095 - 47738995
Alignment:
Q  355 cttaaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccctgtacttgttaatccccccaaaatttccttgcaattattaatcactta 454  Q
    ||||||||||| |  |||||||||||||||| |||  ||||||||| ||||||||| ||  |||||| |||||  |  || ||||| |||||||||||||    
T  47739095 cttaaatatgtgtccagtccctgcaaataggcctcagttgaattttagtccctgtatttactaatcctcccaatttgcccctgcaaatattaatcactta 47738996  T
Q  455 a 455  Q
    |    
T  47738995 a 47738995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 4167384 - 4167291
Alignment:
Q  127 acctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctc 220  Q
    ||||||||||||||| ||||||| | ||||||| || || |||| ||||| || |||  |||||||||| |||  ||||||| ||| |||||||    
T  4167384 acctatttagcaccatattaaatagacaccctcattatggagtataatatttgagtgattatggagaagagtgactatggaagcactctctctc 4167291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 4163352 - 4163288
Alignment:
Q  283 aattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtactta 347  Q
    |||||||||| |||||||||||||||||| ||||   ||| ||| || |||||||||||| ||||    
T  4163352 aattatttgtgggacctatttaataatttcttttatggtgctgggttagagaaaattggtgctta 4163288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 205
Target Start/End: Original strand, 6182499 - 6182590
Alignment:
Q  116 gtggatgattaacctatttagcaccacat--taaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatg 205  Q
    ||||||| || ||||||||||||||| ||  ||||| |||||||   ||||| || | |||||||||||||||||| |||| ||||| ||||    
T  6182499 gtggatgtttcacctatttagcaccatatattaaataggcacccctattgtggagaataatatatgggtgcctatgaagaatggtggctatg 6182590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 38555716 - 38555768
Alignment:
Q  256 aaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataa 308  Q
    |||| |||||||||| |||||||||||||||| ||| | ||| ||||||||||    
T  38555716 aaatgttgttgaaatataatgatatagaattacttgcaagacttatttaataa 38555768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 47066127 - 47066044
Alignment:
Q  169 taaaatatatgggtgcctatggagaagggtggttatggaatcaccctctct--cttcattttttgttggtcctatttaataaat 250  Q
    ||||| ||||| ||| ||||||||||| |||  ||||||| |||| |||||  |||||||||| || || ||||||||||||||    
T  47066127 taaaaaatatgagtgtctatggagaagagtgtctatggaagcaccatctctatcttcatttttcgtgggacctatttaataaat 47066044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 48601523 - 48601479
Alignment:
Q  204 tggaatcaccctctctcttcattttttgttggtcctatttaataa 248  Q
    ||||| ||| |||||| |||||||||||||||||| |||||||||    
T  48601523 tggaagcactctctcttttcattttttgttggtccaatttaataa 48601479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 2e-51; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 112 - 351
Target Start/End: Complemental strand, 20936245 - 20935996
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca 211  Q
    |||| |||||| |||| |||||||  ||||| |||||| || |||| | ||||| ||||| |||||| ||||||||||||||||||||| ||||||| ||    
T  20936245 aatgatggatgcttaatctatttaataccactttaaataggtaccc-cattgtggagtaatatatataggtgcctatggagaagggtggctatggaagca 20936147  T
Q  212 ccctctctct--tcattttttgttggtcctatt---------taataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggaccta 300  Q
    ||||||||||  ||||||||| ||| |   |||         |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  20936146 ccctctctctcttcattttttattgatttaattaataaatcttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtggggccta 20936047  T
Q  301 tttaataatttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||||||||    
T  20936046 tttaataatttattttgaggtgttggattgaagaaaattggtacttattaa 20935996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 124 - 351
Target Start/End: Complemental strand, 29078982 - 29078741
Alignment:
Q  124 ttaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctct-- 221  Q
    |||||||||||| ||||||||||||| || |||| | ||||| ||||| ||| ||||||| |||||||||||||||| ||||||| ||||||||||||      
T  29078982 ttaacctatttaacaccacattaaataggtaccc-cattgtggagtaatatacatgggtgtctatggagaagggtggctatggaagcaccctctctctct 29078884  T
Q  222 ----tcattttttgttggtcctatt---------taataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataa 308  Q
        ||||||||||||| |   |||         ||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  29078883 ctcttcattttttgttgatttaattaataaatcttaataaattaagtaaattttgttgaaatgtaatgatatagaattatttatgggacctatttaataa 29078784  T
Q  309 tttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
    |||||||| ||||||||||||||||||||||| | ||||||||    
T  29078783 tttattttgaagtgttggattggagaaaattgatgcttattaa 29078741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 112 - 354
Target Start/End: Complemental strand, 19332288 - 19332034
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca 211  Q
    ||||| ||||| ||||||||||||||||||| |||||| | ||||    ||||| |||||| ||||||| |  |||||||||||||| | |||||||  |    
T  19332288 aatggcggatgcttaacctatttagcaccacgttaaatagacacctctattgtggagtaaagtatatggatatctatggagaagggtagctatggaagaa 19332189  T
Q  212 ccct--ctctcttcattttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaattatttgtaggacct 299  Q
    ||||  |||||||||||||||||||||||||||||||||||          |||||||||||||||||| | |||||||||| |||||||||| |||| |    
T  19332188 ccctttctctcttcattttttgttggtcctatttaataaatcttaataaattaaataaattttgttgaattataatgatataaaattatttgtgggactt 19332089  T
Q  300 atttaataatttattttcaagtgttggattggagaaaattggtacttattaaata 354  Q
    |||||||||||| |||| | ||||||| ||||||||||||||| |||||||||||    
T  19332088 atttaataatttcttttgaggtgttgggttggagaaaattggtgcttattaaata 19332034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 112 - 316
Target Start/End: Complemental strand, 26919444 - 26919235
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca 211  Q
    ||||||||||| || || |||||||||||| |||||||  |||||| | ||||  |||| |||||||||||     ||||||| ||||| ||||||| ||    
T  26919444 aatggtggatgcttcacatatttagcaccatattaaataagcacccccattgtagagtataatatatgggt-----tggagaatggtggctatggaagca 26919350  T
Q  212 ccctctctcttcattttttgttggtcctatttaataaatt----------aaataaattttgttgaaatgtaatgatatagaattatttgtaggacctat 301  Q
    || |||||||||||||||||  ||||| ||||||||||||          |||||||||||||||||||||||||||||| |||||||| | ||||||||    
T  26919349 ccttctctcttcattttttgcgggtcccatttaataaattttaattcaataaataaattttgttgaaatgtaatgatataaaattatttatgggacctat 26919250  T
Q  302 ttaataatttatttt 316  Q
    |||||||||| ||||    
T  26919249 ttaataatttctttt 26919235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 251 - 351
Target Start/End: Original strand, 11137761 - 11137861
Alignment:
Q  251 taaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtacttatta 350  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||| || |||| | ||||||| |||||||||||| ||||||||||    
T  11137761 taaataaattttgttgaaatgcaatgatataaaattatttgtaggatctatttaataacttcttttgaggtgttgggttggagaaaattagtacttatta 11137860  T
Q  351 a 351  Q
    |    
T  11137861 a 11137861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 47495550 - 47495624
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttatttt 316  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||||||||| ||||    
T  47495550 ttaataaattaaataaattttgttgaaatgtaatgatataaaattatttatatgagctatttaataatttctttt 47495624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 241 - 351
Target Start/End: Original strand, 48962340 - 48962450
Alignment:
Q  241 tttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattg 340  Q
    ||||||||| ||||||| |||||||||| |||||||||||| ||||||||||| ||||||||||||||||| |||| | ||| ||  |||||||||||      
T  48962340 tttaataaaataaataatttttgttgaattgtaatgatataaaattatttgtatgacctatttaataatttcttttgaggtgctgagttggagaaaatga 48962439  T
Q  341 gtacttattaa 351  Q
    || ||||||||    
T  48962440 gtgcttattaa 48962450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 112 - 316
Target Start/End: Complemental strand, 26952628 - 26952413
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca 211  Q
    |||||||| || || ||||||||||||||| ||||||| | ||||  | ||||| |||| ||||| |||||||||||||| ||| |||  ||||||| ||    
T  26952628 aatggtgggtgcttcacctatttagcaccatattaaatagacacctccattgtggagtataatatttgggtgcctatggacaagagtgactatggaagca 26952529  T
Q  212 ccctctctct-tcattttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaattatttgtaggaccta 300  Q
    |||||||||| |    ||||   |  ||||||||||||||          ||||||| ||||||||||||||||||||||| ||||||||||  ||||||    
T  26952528 ccctctctctcttcgcttttacggaccctatttaataaatcataatgaaataaataatttttgttgaaatgtaatgatataaaattatttgttagaccta 26952429  T
Q  301 tttaataatttatttt 316  Q
    ||||||||||| ||||    
T  26952428 tttaataatttctttt 26952413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 253 - 351
Target Start/End: Original strand, 20826343 - 20826442
Alignment:
Q  253 aataaattttgttgaaa-tgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
    ||||||||||||| ||| ||||||||| |||| ||||| || ||||||||| ||||||||||||| | ||||||| ||||||||||||| | ||||||||    
T  20826343 aataaattttgttaaaaatgtaatgatctagagttattggtgggacctattcaataatttattttgaggtgttgggttggagaaaattgatgcttattaa 20826442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 37333183 - 37333290
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca 211  Q
    |||||||| || || ||||||||||||||||||||||| | || |||| ||||| |||| || |||| ||||| || |||||||||||| ||||||| ||    
T  37333183 aatggtgggtgcttcacctatttagcaccacattaaatagacatcctcattgtggagtataacatatcggtgcttacggagaagggtggctatggaagca 37333282  T
Q  212 ccctctct 219  Q
    ||||||||    
T  37333283 ccctctct 37333290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 162 - 250
Target Start/End: Original strand, 44542904 - 44542993
Alignment:
Q  162 tgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctct--ctcttcattttttgttggtcctatttaataaat 250  Q
    ||||||||| |||||||||||||||||  |||||  ||||||||||| ||||||||  ||||||||||||||| |||||||||||||||||    
T  44542904 tgtgaagtataatatatgggtgcctataaagaagt-tggttatggaaacaccctctctctcttcattttttgtgggtcctatttaataaat 44542993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 242 - 351
Target Start/End: Original strand, 10046349 - 10046456
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattgg 341  Q
    |||||||| ||||||||| ||||| |||| |||||||||| |||||||||| ||||||||| |||||||||  || | ||| ||| |||||||||| |||    
T  10046349 ttaataaaataaataaatgttgttaaaatttaatgatataaaattatttgtgggacctattgaataattta--ttgaggtgctgggttggagaaaagtgg 10046446  T
Q  342 tacttattaa 351  Q
    | ||||||||    
T  10046447 tgcttattaa 10046456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 47864982 - 47864916
Alignment:
Q  241 tttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaata 307  Q
    ||||||||| ||||||||||||||||||||||||||||| | |||||||||||| || |||||||||    
T  47864982 tttaataaaataaataaattttgttgaaatgtaatgataaaaaattatttgtagaacttatttaata 47864916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 356 - 450
Target Start/End: Original strand, 20974937 - 20975031
Alignment:
Q  356 ttaaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccctgtacttgttaatccccccaaaatttccttgcaattattaatca 450  Q
    ||||||||||||||||||||||||||||||||||  ||||||||| |||| |||||||  |||||| |||    ||| | |||||||||||||||    
T  20974937 ttaaatatgtctatagtccctgcaaatagggctcagttgaattttcgtccatgtacttactaatcctcccttttttttcctgcaattattaatca 20975031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 242 - 342
Target Start/End: Complemental strand, 46909905 - 46909805
Alignment:
Q  242 ttaataaattaaataaattttgttgaaa-tgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattg 340  Q
    |||||||| ||||||| ||||||| ||| |||||||||||| | |||||||| ||| |||||||||||||| |||| ||||||| |  ||||||||||||    
T  46909905 ttaataaaataaataatttttgttaaaaatgtaatgatataaagttatttgt-ggagctatttaataatttcttttgaagtgttaggctggagaaaattg 46909807  T
Q  341 gt 342  Q
    ||    
T  46909806 gt 46909805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 358 - 450
Target Start/End: Original strand, 20961023 - 20961115
Alignment:
Q  358 aaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccctgtacttgttaatccccccaaaatttccttgcaattattaatca 450  Q
    ||||||||||||||||||||||||||||||||  ||||||||| | |||| |||||  |||||| ||||   ||| ||||||| |||||||||    
T  20961023 aaatatgtctatagtccctgcaaatagggctcagttgaattttcgcccctatacttactaatcctcccatctttttcttgcaagtattaatca 20961115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 191
Target Start/End: Original strand, 18090373 - 18090452
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatgga 191  Q
    ||||||||||| || | ||||||||||||||||||||| ||||||  | |||| | ||| ||||||||||||||||||||    
T  18090373 aatggtggatgcttcatctatttagcaccacattaaataggcacctccattgttatgtataatatatgggtgcctatgga 18090452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 266 - 354
Target Start/End: Original strand, 44543187 - 44543275
Alignment:
Q  266 gaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtacttattaaata 354  Q
    ||||||| || ||||||||||||| || | |||||||||||||||| |||| |  |||||| ||||||||||| ||| |||||| ||||    
T  44543187 gaaatgttattatatagaattattagtggaacctatttaataatttcttttaagatgttgggttggagaaaatcggtgcttattgaata 44543275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 172 - 303
Target Start/End: Original strand, 51370374 - 51370516
Alignment:
Q  172 aatatatgggtgcctatggagaagggtggttatggaatcaccctctctcttcattttttgttggtcctatttaataaat----------taaataaa-tt 260  Q
    ||||| || ||| |||| |||||| |||| ||||||| ||| ||||||||||| ||||||| | |||||||||||||||          |||||||| ||    
T  51370374 aatatttgagtgtctatagagaagagtggctatggaaacactctctctcttcactttttgtggatcctatttaataaatcataatgaaataaataaattt 51370473  T
Q  261 ttgttgaaatgtaatgatatagaattatttgtaggacctattt 303  Q
    |||||||||| |||||||||  ||||||||| ||| |||||||    
T  51370474 ttgttgaaatataatgatatgaaattatttgcagggcctattt 51370516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 47342476 - 47342537
Alignment:
Q  251 taaataaattttg-ttgaaatgtaatgatatagaattatttgtaggacctatttaataattt 311  Q
    ||||||||||||| |||||||||||||||||| ||||| || | ||||||||||| ||||||    
T  47342476 taaataaattttggttgaaatgtaatgatatataattacttctgggacctatttagtaattt 47342537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 27371695 - 27371806
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatg-gagaagggtggttatggaatc 210  Q
    |||||||| || || ||||||||| ||| | | ||||| ||||||| | ||||| |||| ||||| ||| |||||||| || ||  |||||||||||| |    
T  27371695 aatggtgggtgtttcacctatttaacactatactaaataggcaccccctttgtggagtataatatttggatgcctatgagaaaaaagtggttatggaagc 27371794  T
Q  211 accctctctctt 222  Q
    ||||||||||||    
T  27371795 accctctctctt 27371806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 1102812 - 1102906
Alignment:
Q  127 acctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctct 221  Q
    |||||| |||||||||||||||| | ||| ||| ||||| |||| || |||||||||||| |  || ||||||||||| ||| || || ||||||    
T  1102812 acctatgtagcaccacattaaatagacacactcattgtggagtataacatatgggtgcctgtcaaggagggtggttatagaagcaacccctctct 1102906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 355 - 413
Target Start/End: Complemental strand, 34743950 - 34743892
Alignment:
Q  355 cttaaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccctgtactt 413  Q
    |||||| |||||||||||| ||||||||||| |||  ||||||||| |||| |||||||    
T  34743950 cttaaacatgtctatagtctctgcaaataggactcaattgaattttagtccttgtactt 34743892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 334
Target Start/End: Original strand, 40891386 - 40891458
Alignment:
Q  261 ttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggaga 334  Q
    ||||| ||||||||||||||||| |||||  | ||||||| ||||||| ||||||| ||||| ||| |||||||    
T  40891386 ttgttaaaatgtaatgatatagagttattgttgggacctaattaataa-ttattttaaagtgctgggttggaga 40891458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 269 - 349
Target Start/End: Complemental strand, 19554846 - 19554767
Alignment:
Q  269 atgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtacttatt 349  Q
    ||||||||||||||| |||||| | || | ||||||||||||| |||| | ||| ||| ||||||||||||| | ||||||    
T  19554846 atgtaatgatatagagttatttatggggc-tatttaataatttcttttgaggtgctgggttggagaaaattgattcttatt 19554767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 1e-49; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 136 - 350
Target Start/End: Original strand, 43429346 - 43429578
Alignment:
Q  136 gcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctct--------tcattt 227  Q
    |||||||||||||| ||||||| | || || |||||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||        ||||||    
T  43429346 gcaccacattaaataggcacccccattttggagtaaaatatatgggtgcctatggagaagggtggctatagaagcactctctctctctctctcttcattt 43429445  T
Q  228 tttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttc 317  Q
    |||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||     
T  43429446 tttgttggtcctatttaataaatcctaaaaaattaaataaattttgttgaaatgtaatgatatagaattatttgtggaacttatttaataatttcttttg 43429545  T
Q  318 aagtgttggattggagaaaattggtacttatta 350  Q
    | ||||||| ||||||||||||||||| |||||    
T  43429546 aggtgttgggttggagaaaattggtacctatta 43429578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 101 - 351
Target Start/End: Original strand, 7186184 - 7186446
Alignment:
Q  101 agaccatatataatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtgg 200  Q
    |||||||| | |||||||| || || || |||||||||||  ||||||| ||||| ||| ||||| || | |||||||||||| ||||||||||||||||    
T  7186184 agaccatacacaatggtgggtgcttcacatatttagcaccgtattaaataggcactctcattgtggagaataatatatgggtggctatggagaagggtgg 7186283  T
Q  201 ttatggaatcaccctctc--tcttcattttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaattat 288  Q
     ||||||| |||||||||  |||||||||||  | ||||| |||||||||||          ||||||||| ||||| |||| |||||||||| ||||||    
T  7186284 ctatggaagcaccctctctatcttcatttttcatgggtcccatttaataaatcttaataaaataaataaatgttgttaaaatataatgatataaaattat 7186383  T
Q  289 ttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
     |||  |||| ||||||||||||||||| | ||||||| |||||||||| |||| ||||||||    
T  7186384 ctgtgagaccaatttaataatttattttgaggtgttgggttggagaaaagtggtgcttattaa 7186446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 161 - 354
Target Start/End: Complemental strand, 6148472 - 6148266
Alignment:
Q  161 ttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctctt----cattttttgttggtcctatttaataaat------ 250  Q
    |||||||||| |||||||||||| |||||||||||| ||| | ||||| |||||||||||||    ||||||| |  |||||||||||||||||          
T  6148472 ttgtgaagtataatatatgggtgtctatggagaaggatggct-tggaagcaccctctctctttcttcatttttcgcgggtcctatttaataaatcttaat 6148374  T
Q  251 ----taaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtactt 346  Q
        |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| | ||| ||| ||| ||||||||| | |||    
T  6148373 aaaataaataaattttgttgaaatttaatgatatagaattatttgtgggacctatttaataatttcttttaaggtgctgggttgtagaaaattgatgctt 6148274  T
Q  347 attaaata 354  Q
    ||||||||    
T  6148273 attaaata 6148266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 112 - 339
Target Start/End: Complemental strand, 37127751 - 37127512
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca 211  Q
    |||||||| || || ||||||||| ||||||||||||| |||| ||||  |||| |||| |||| || |||| ||||||||||| |||| ||||||| ||    
T  37127751 aatggtgggtgctttacctatttatcaccacattaaataggcatcctcactgtggagtataataaataggtggctatggagaagagtggctatggaagca 37127652  T
Q  212 ccctct--ctcttcattttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaattatttgtaggacct 299  Q
     |||||  ||||||||||||  | ||||  |||||||| ||          ||||||||||||||||||||||||||||||| |||||||||| ||| ||    
T  37127651 acctctttctcttcatttttcatgggtctcatttaatagatcttaataaaataaataaattttgttgaaatgtaatgatataaaattatttgtgggatct 37127552  T
Q  300 atttaataatttattttcaagtgttggattggagaaaatt 339  Q
    ||||||||||||||||| | ||| | | ||||||||||||    
T  37127551 atttaataatttattttaaggtgctcggttggagaaaatt 37127512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 129 - 316
Target Start/End: Original strand, 41407222 - 41407421
Alignment:
Q  129 ctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctcttc--att 226  Q
    ||||||| ||||| ||||||| |||||| || ||||| ||||||||||||||||| |||| ||||| ||||| ||||||| ||||||||||||||  |||    
T  41407222 ctatttaacaccatattaaataggcaccatcattgtggagtaaaatatatgggtggctatagagaatggtggctatggaagcaccctctctcttcttatt 41407321  T
Q  227 ttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttatttt 316  Q
    |||  | ||| | |||||||||||          |||||||||||||||||| |||||||||||| | |||||||||||| |||||||||||||| ||||    
T  41407322 tttcatgggttccatttaataaattttaatagaataaataaattttgttgaagtgtaatgatataaagttatttgtaggatctatttaataatttctttt 41407421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 242 - 354
Target Start/End: Complemental strand, 1598079 - 1597967
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattgg 341  Q
    ||||||||||| ||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||| | ||||| | |||||||| |||||    
T  1598079 ttaataaattatatatattttgttgaaatgtaatgatataaaattatttgtgggacctatttaataatttcttttgaggtgttcggttggagaatattgg 1597980  T
Q  342 tacttattaaata 354  Q
    | |||||||||||    
T  1597979 tgcttattaaata 1597967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 259 - 354
Target Start/End: Original strand, 42845328 - 42845423
Alignment:
Q  259 ttttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtacttattaaata 354  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  || |||||  |||||||||| |||||||||||||    
T  42845328 ttttgttgaaatgtaatgatatagaattatttgtgggacctatttaataatttattttgagatgctggatgtgagaaaattgatacttattaaata 42845423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 113 - 332
Target Start/End: Original strand, 40216364 - 40216594
Alignment:
Q  113 atggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcac 212  Q
    |||||||||| || |||||||||||||||||||||||   ||  | | ||||| |||| ||||||  ||||  ||||||||||||||||||||||| |||    
T  40216364 atggtggatgcttcacctatttagcaccacattaaatacccattc-cattgtggagtataatataatggtggttatggagaagggtggttatggaagcac 40216462  T
Q  213 cctct--ctcttcattttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaattatttgtaggaccta 300  Q
    |||||  ||||||||||||  | ||||   ||||||||||          ||||||||||||||||||||||||||||||| ||||||| || || ||||    
T  40216463 cctctatctcttcatttttcatgggtcacgtttaataaatcttaataaaataaataaattttgttgaaatgtaatgatataaaattattggtggggccta 40216562  T
Q  301 tttaataatttattttcaagtgttggattgga 332  Q
    ||||||||||| |||| | ||||||| |||||    
T  40216563 tttaataatttcttttaaggtgttgggttgga 40216594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 195 - 351
Target Start/End: Original strand, 20765693 - 20765859
Alignment:
Q  195 gggtggttatggaatcaccctctctcttcattttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaa 284  Q
    |||||| ||||||| |||| |||||||||||||||| | ||||| |||||||||||          ||||||||||||||||||||||||||||||| ||    
T  20765693 gggtggctatggaagcaccttctctcttcattttttatgggtccaatttaataaatcttaataaaataaataaattttgttgaaatgtaatgatataaaa 20765792  T
Q  285 ttatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
    |||||||| ||  |||||||||| ||| |||| | ||| ||| ||||||||||||| | ||||||||    
T  20765793 ttatttgtgggcactatttaatattttcttttaaggtgctgggttggagaaaattgatgcttattaa 20765859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 256 - 351
Target Start/End: Complemental strand, 3346773 - 3346678
Alignment:
Q  256 aaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
    ||||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||| | ||||||| ||| |||||| ||||  |||||||    
T  3346773 aaattttgttgaaatgtaatgatttagaattatttgtcgaacctatttaataatttcttttgaggtgttgggttgaagaaaactggtgtttattaa 3346678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 8845566 - 8845675
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca 211  Q
    |||||||| || || ||||||||||||||||||||||| |||||   | ||||| |||| || |||||||||| ||||||| ||||||| ||||||| ||    
T  8845566 aatggtgggtgctttacctatttagcaccacattaaataggcacttccattgtggagtataacatatgggtgcttatggaggagggtggctatggaagca 8845665  T
Q  212 ccctctctct 221  Q
    ||||||||||    
T  8845666 ccctctctct 8845675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 125 - 291
Target Start/End: Original strand, 39949559 - 39949742
Alignment:
Q  125 taacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctct----- 219  Q
    ||||||||||| || |||||||||  | ||||| | ||||| | | | |||||||| ||| ||||||||||| ||| ||||||| ||||||||||         
T  39949559 taacctatttaacatcacattaaacagacacccccattgtggatttacatatatggatgcttatggagaaggatggctatggaaacaccctctctttctc 39949658  T
Q  220 -cttcatttttt-gttggtcctatttaa----------taaattaaataaattttgttgaaatgtaatgatatagaattatttg 291  Q
     ||||||||||| |||||||||||||||          ||||||||||||||||||||||||||||| ||||||||||||||||    
T  39949659 tcttcatttttttgttggtcctatttaataaatcttaataaattaaataaattttgttgaaatgtaacgatatagaattatttg 39949742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 124 - 234
Target Start/End: Original strand, 42845224 - 42845335
Alignment:
Q  124 ttaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccct--ctctct 221  Q
    |||| ||||||||||||||||||||| || || | | || || ||||| |||||||||||||||||||||| ||||| ||||||| ||||||  ||||||    
T  42845224 ttaatctatttagcaccacattaaataggtactc-cattatggagtaatatatatgggtgcctatggagaatggtggctatggaagcaccctccctctct 42845322  T
Q  222 tcattttttgttg 234  Q
    |||||||||||||    
T  42845323 tcattttttgttg 42845335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 242 - 311
Target Start/End: Complemental strand, 43417845 - 43417776
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataattt 311  Q
    |||||||| |||| |||||||||||||||||||| ||| | |||||||||| ||||||||||||||||||    
T  43417845 ttaataaaataaagaaattttgttgaaatgtaatcatacataattatttgtgggacctatttaataattt 43417776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 453 - 613
Target Start/End: Original strand, 4970238 - 4970398
Alignment:
Q  453 taattacttttgtttgcatatgtgtcaagtgattacttatatggcactgacgtggctctagctgactgggtaaggacctcactgactcagctttttgaac 552  Q
    ||||||||| |  |||| |||||| || ||||||||| || ||||| ||||||||| | | |||||||||| | ||| |  ||||||||| |||||| ||    
T  4970238 taattacttcttattgcctatgtggcacgtgattactgatgtggcaatgacgtggcaccatctgactgggtcaagactttgctgactcagttttttgtac 4970337  T
Q  553 ttgaacttctcattttgcccttaatgaaaccagaggtgtgcgaattgaccaaaatacccct 613  Q
     |||||||| |||||| ||||||||||||| |||    |||||| |||| |||||||||||    
T  4970338 atgaacttcccattttacccttaatgaaacaagacacatgcgaaatgactaaaatacccct 4970398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 242 - 340
Target Start/End: Original strand, 3692020 - 3692118
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattg 340  Q
    |||||||  |||||||||||||||||||| ||||||||||||||||||| | | | || ||||||||||| |||| | ||  | |||||||||||||||    
T  3692020 ttaataagataaataaattttgttgaaatctaatgatatagaattatttattgaaactgtttaataatttcttttgaggttctagattggagaaaattg 3692118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 43073565 - 43073617
Alignment:
Q  355 cttaaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccct 407  Q
    ||||||||||| | | |||||||||||||||||||||||||||||||||||||    
T  43073565 cttaaatatgtgtttcgtccctgcaaatagggctcgtttgaatttttgtccct 43073617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 316
Target Start/End: Original strand, 40978833 - 40978888
Alignment:
Q  261 ttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttatttt 316  Q
    ||||||||||||||||||||| |||||||||| | |||||||||||||||| ||||    
T  40978833 ttgttgaaatgtaatgatataaaattatttgtggaacctatttaataatttctttt 40978888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 242 - 354
Target Start/End: Complemental strand, 34474376 - 34474262
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatg--atatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaatt 339  Q
    |||||||| ||||||  |||||||||||||||||   ||||||||   ||| |  ||||||||||||||||| |||| |  |  ||| ||||||||||||    
T  34474376 ttaataaaataaatattttttgttgaaatgtaatagtatatagaaaattttatgagacctatttaataatttcttttgatataatgggttggagaaaatt 34474277  T
Q  340 ggtacttattaaata 354  Q
    |||||||||||||||    
T  34474276 ggtacttattaaata 34474262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 427
Target Start/End: Original strand, 41767615 - 41767687
Alignment:
Q  355 cttaaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccctgtacttgttaatccccccaa 427  Q
    ||||||||||| |  |||||||||||||||| |||  ||||||||| ||||||||||||  |||||| |||||    
T  41767615 cttaaatatgtgtccagtccctgcaaataggcctcagttgaattttagtccctgtacttactaatcctcccaa 41767687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 427
Target Start/End: Complemental strand, 41773712 - 41773640
Alignment:
Q  355 cttaaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccctgtacttgttaatccccccaa 427  Q
    ||||||||||| |  |||||||||||||||| |||  ||||||||| ||||||||||||  |||||| |||||    
T  41773712 cttaaatatgtgtccagtccctgcaaataggcctcagttgaattttagtccctgtacttactaatcctcccaa 41773640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 356 - 400
Target Start/End: Complemental strand, 43074641 - 43074597
Alignment:
Q  356 ttaaatatgtctatagtccctgcaaatagggctcgtttgaatttt 400  Q
    |||||||||| | | ||||||||||||||||||||||||||||||    
T  43074641 ttaaatatgtgtttcgtccctgcaaatagggctcgtttgaatttt 43074597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 23629609 - 23629658
Alignment:
Q  267 aaatgtaatgatatagaattatttgtaggacctatttaataatttatttt 316  Q
    |||||||||| ||||||||||||||| ||| ||| |||||||||| ||||    
T  23629609 aaatgtaatgttatagaattatttgtgggatctaattaataatttctttt 23629658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 253 - 281
Target Start/End: Complemental strand, 38528081 - 38528053
Alignment:
Q  253 aataaattttgttgaaatgtaatgatata 281  Q
    |||||||||||||||||||||||||||||    
T  38528081 aataaattttgttgaaatgtaatgatata 38528053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 6e-45; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 129 - 351
Target Start/End: Original strand, 23418887 - 23419113
Alignment:
Q  129 ctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctct--tcatt 226  Q
    ||||||| ||||  ||||||| ||||||| | ||||| |||| |||||||||||| |||||||||| ||||| ||||||| ||||||||||||  |||||    
T  23418887 ctatttaacaccgtattaaataggcacccccattgtggagtataatatatgggtggctatggagaatggtggctatggaagcaccctctctctattcatt 23418986  T
Q  227 ttttgttggtcctatttaataaat--taaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgtt 324  Q
    |||  | ||||| |||||||||||  |||  |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| | ||| |    
T  23418987 tttcttgggtcccatttaataaatcttaataaaattttgttgaaatgtaatgatataaaattatttgtagggcctatttaataatttcttttgaggtgct 23419086  T
Q  325 ggattggagaaaattggtacttattaa 351  Q
    || |||||||||||  || ||||||||    
T  23419087 gggttggagaaaatcagtgcttattaa 23419113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 124 - 351
Target Start/End: Original strand, 16561764 - 16562002
Alignment:
Q  124 ttaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctcttc 223  Q
    |||| ||||||||||| ||||||||| ||  ||||||||||| ||||||| |||| |||| ||||||||||  |||| ||||||| ||| ||||||||||    
T  16561764 ttaatctatttagcactacattaaataggagccctcgttgtggagtaaaaaatataggtgtctatggagaaatgtggctatggaagcactctctctcttc 16561863  T
Q  224 attttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttat 313  Q
    ||||||    | |   |||||||||||          |||||||||||||||||||| |||||||||| |||||||||| |||| ||||||||||||| |    
T  16561864 atttttcacggatttcatttaataaatcttaataaattaaataaattttgttgaaatataatgatatataattatttgtgggacttatttaataattttt 16561963  T
Q  314 tttcaagtgt-tggattggagaaaattggtacttattaa 351  Q
    |||  || |  ||| ||||||| ||||||||||||||||    
T  16561964 ttttgaggggctgggttggagataattggtacttattaa 16562002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 167 - 311
Target Start/End: Complemental strand, 10667519 - 10667363
Alignment:
Q  167 agtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctct--tcattttttgttggtcctatttaataaat----------taaa 254  Q
    ||||||||||||||||| |||| |||||||| |||||||||| ||||||||||||  ||||||||     ||||||||||||||||          ||||    
T  10667519 agtaaaatatatgggtgtctatagagaagggaggttatggaagcaccctctctctcttcatttttcccgagtcctatttaataaatcttaacaaattaaa 10667420  T
Q  255 taaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataattt 311  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||    
T  10667419 taaattttgttaaaatgtaatgatatagaattatttgtgagacctatttaataattt 10667363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 242 - 339
Target Start/End: Complemental strand, 35377894 - 35377797
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaatt 339  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||| | ||| ||| ||||||||||||    
T  35377894 ttaataaaataaataaattttgttgaaatgtaatgatataaaattatttgtatgccctatttaataatttcttttgaggtgctgggttggagaaaatt 35377797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 113 - 342
Target Start/End: Original strand, 27903561 - 27903800
Alignment:
Q  113 atggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcac 212  Q
    ||||||| || || ||||||||||||| ||||||||| ||||||| | ||||| |||| |||| ||||||| ||||||| || ||||| ||||||| ||     
T  27903561 atggtgggtgtttcacctatttagcactacattaaataggcaccc-cattgtggagtataatacatgggtgactatgga-aatggtggatatggaagcat 27903658  T
Q  213 c--ctctctcttcattttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaattatttgtaggaccta 300  Q
    |  ||||||||||||||||  | ||||  |||||||||||          ||| ||||||||||| ||||||||||||||| |||||||||| |||||||    
T  27903659 catctctctcttcatttttcatgggtcacatttaataaatattaaaaaaataattaaattttgttaaaatgtaatgatataaaattatttgtgggaccta 27903758  T
Q  301 tttaataatttattttcaagtgttggattggagaaaattggt 342  Q
    |||||||| || |||| |  |||||| || ||||||||||||    
T  27903759 tttaataacttctttttagatgttgggtttgagaaaattggt 27903800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 112 - 216
Target Start/End: Complemental strand, 43101030 - 43100926
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca 211  Q
    |||||||| || ||||||||||||||||||||||||||  |||||||| ||||| |||| || |||||||||| ||||||| ||| ||| ||||||| ||    
T  43101030 aatggtgggtgcttaacctatttagcaccacattaaataagcaccctcattgtggagtataacatatgggtgcttatggagtaggttggctatggaagca 43100931  T
Q  212 ccctc 216  Q
    |||||    
T  43100930 ccctc 43100926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 95 - 291
Target Start/End: Original strand, 19279421 - 19279629
Alignment:
Q  95 tcactaagaccatatataatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaa 194  Q
    |||||||||||||  | |||||||| || || |||||||||||| |||||||||| | ||| | | || || |||| |||| ||||||| ||||||||||    
T  19279421 tcactaagaccatccacaatggtgggtgcttcacctatttagcatcacattaaatagacacaccctttatggagtataatacatgggtggctatggagaa 19279520  T
Q  195 gggtggttatggaatcacc--ctctctcttcattttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatag 282  Q
    || ||| ||||||| ||||  |||||||||| |||||  | | ||  |||||||||||          |||||||||||||||||||||||||||||||     
T  19279521 ggatggctatggaagcaccctctctctcttcctttttcatggatcacatttaataaatattaataaaataaataaattttgttgaaatgtaatgatataa 19279620  T
Q  283 aattatttg 291  Q
    |||||||||    
T  19279621 aattatttg 19279629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 99 - 221
Target Start/End: Complemental strand, 9622479 - 9622357
Alignment:
Q  99 taagaccatatataatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggt 198  Q
    |||||||||  | |||||||| || || ||||||||||||||||||||||| | ||||| | ||||| |||| || ||||| |||| ||||||  |||||    
T  9622479 taagaccatccacaatggtgggtgcttcacctatttagcaccacattaaatagacacccccattgtggagtataacatatgagtgcttatggaagagggt 9622380  T
Q  199 ggttatggaatcaccctctctct 221  Q
    |  ||||||| ||||||||||||    
T  9622379 gactatggaagcaccctctctct 9622357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 7211394 - 7211453
Alignment:
Q  253 aataaattttgttgaaatgtaat-gatatagaattatttgtaggacctatttaataattt 311  Q
    |||||||||||||||||||| || |||||| |||||||||| ||||||||||||||||||    
T  7211394 aataaattttgttgaaatgtcattgatataaaattatttgtgggacctatttaataattt 7211453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 267 - 351
Target Start/End: Complemental strand, 5423072 - 5422989
Alignment:
Q  267 aaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
    |||||||| |||||||| ||||| || || |||||||||| | || |||| | ||||| ||||||||||||||||| ||||||||    
T  5423072 aaatgtaaagatatagagttattggtggg-cctatttaattaattcttttgaggtgttagattggagaaaattggtgcttattaa 5422989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 253 - 293
Target Start/End: Complemental strand, 6783555 - 6783515
Alignment:
Q  253 aataaattttgttgaaatgtaatgatatagaattatttgta 293  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  6783555 aataaattttattgaaatgtaatgatataaaattatttgta 6783515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 4e-43; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 112 - 351
Target Start/End: Original strand, 32183784 - 32184035
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca 211  Q
    |||||||| || || | |||||||||| || ||||||| ||||||| | ||||| |||| |||||||||||| |||||||||| ||||| ||||||| ||    
T  32183784 aatggtgggtgcttcatctatttagcatcatattaaataggcacccccattgtggagtataatatatgggtggctatggagaacggtggctatggaagca 32183883  T
Q  212 ccctctct--cttcattttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaattatttgtaggacct 299  Q
    ||||||||  ||||||||||  | ||||  |||||||||||          ||||||| ||||||||||||||||||||||| ||||||||||||||| |    
T  32183884 ccctctctttcttcatttttcatgggtcacatttaataaatcttaataaaataaataatttttgttgaaatgtaatgatataaaattatttgtaggactt 32183983  T
Q  300 atttaataatttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
    |||||||||||| |||| | ||||||| |||||||||||||||  |||||||    
T  32183984 atttaataatttcttttgaggtgttgggttggagaaaattggtgtttattaa 32184035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 112 - 340
Target Start/End: Original strand, 521172 - 521413
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca 211  Q
    ||||||| ||| ||||||||||||||||||||||||||  ||| |  | ||||| ||||||||||||| ||| ||||| |||||||||| | ||||| ||    
T  521172 aatggtgcatgcttaacctatttagcaccacattaaataagcatctccattgtggagtaaaatatatgagtgtctatgaagaagggtggctttggaagca 521271  T
Q  212 ccctctctct---tcattttttgttggtcctatttaa----------taaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacc 298  Q
     |||||||||   |  |||||| ||||||||||||||          |||||||||||||||||||||||||||||||||||| |||||||||| ||| |    
T  521272 tcctctctctctttatttttttcttggtcctatttaataaatcttaataaattaaataaattttgttgaaatgtaatgatatataattatttgtgggatc 521371  T
Q  299 tatttaataatttattttcaagtgttggattggagaaaattg 340  Q
    ||||||||||||| |||| | ||| |||||| ||||||||||    
T  521372 tatttaataatttcttttgaggtgctggattagagaaaattg 521413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 127 - 351
Target Start/End: Original strand, 15489400 - 15489632
Alignment:
Q  127 acctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctcttcatt 226  Q
    ||||||||||||||||||||||| ||||||| | ||||| |||| ||||| |||||| ||||||||||  |||| ||||||| |||||||||||  ||||    
T  15489400 acctatttagcaccacattaaataggcacccccattgtggagtataatatttgggtgtctatggagaaaagtggctatggaagcaccctctctc--catt 15489497  T
Q  227 ttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttatttt 316  Q
    |||||  ||||  |||||||||||          |||| |||||| ||||||||||||| | ||| |||||||||| |||||||||||||||||| ||||    
T  15489498 ttttgcgggtctcatttaataaatcttaatataataaagaaatttcgttgaaatgtaattacatataattatttgtgggacctatttaataatttctttt 15489597  T
Q  317 caagtgttggattggagaaaattggtacttattaa 351  Q
     | ||||||| ||||||||||||||| ||||||||    
T  15489598 gatgtgttgggttggagaaaattggtgcttattaa 15489632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 112 - 351
Target Start/End: Original strand, 13185458 - 13185708
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca 211  Q
    ||||||||| |  ||||||| |||||||| |||||||| |||| |||  ||||| |||||||||||||||||||  ||||||||||||  |||||||  |    
T  13185458 aatggtggaagcataacctacttagcaccgcattaaataggcatccta-ttgtggagtaaaatatatgggtgccattggagaagggtgactatggaagaa 13185556  T
Q  212 ccctct--ctcttcattttttgttggtcctatttaa----------taaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacct 299  Q
    ||||||  |||||||||||| || || |||||||||          ||||||| |||||||||||||||| ||||||||| |||||||||||| |||| |    
T  13185557 ccctctatctcttcatttttcgtgggacctatttaataaatcttaataaattatataaattttgttgaaacgtaatgatagagaattatttgtgggactt 13185656  T
Q  300 atttaataatttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
    |||||||||||| |||| |  || ||| ||||||||||||||| ||||||||    
T  13185657 atttaataatttcttttgagctgctgggttggagaaaattggtgcttattaa 13185708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 127 - 351
Target Start/End: Complemental strand, 15135114 - 15134873
Alignment:
Q  127 acctatttagcaccacattaaattggcaccctcg-ttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctc------t 219  Q
    ||||||||||||||||||||||| |||||||||  ||||| |||| |||| ||||||| |||||||||||||||| ||||||| |||||||||      |    
T  15135114 acctatttagcaccacattaaataggcaccctccattgtggagtataatacatgggtggctatggagaagggtggctatggaagcaccctctctctttct 15135015  T
Q  220 cttcattttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataat 309  Q
    ||||||||||  | ||||  |||||||||||          ||||||||||||||||||||||||||||||| |||||||||| | | ||||||||||||    
T  15135014 cttcatttttcatgggtctcatttaataaatcttaataaaataaataaattttgttgaaatgtaatgatataaaattatttgtggaatctatttaataat 15134915  T
Q  310 ttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
    || |||| | ||  | | |||||||||||||||  |||||||    
T  15134914 ttcttttaaggtactaggttggagaaaattggtgtttattaa 15134873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 161 - 308
Target Start/End: Original strand, 15611538 - 15611695
Alignment:
Q  161 ttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctcttcattttttgttggtcctat----------ttaataaat 250  Q
    ||||| ||||||||| |||| || || ||||||| ||||  ||||||| ||| ||||||||| ||||||| ||||||||||          |||||||||    
T  15611538 ttgtggagtaaaatacatggttgtctgtggagaaaggtgactatggaagcacactctctctttattttttattggtcctatataataaatcttaataaat 15611637  T
Q  251 taaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataa 308  Q
    ||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||    
T  15611638 taaataaattttgttgaaatgtaatgatataaaattatttatgggacctatttaataa 15611695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 175 - 354
Target Start/End: Original strand, 5188149 - 5188330
Alignment:
Q  175 atatgggtgcctatggagaagggtggttatggaatcaccc--tctctcttcattttttgttggtcctatttaataaattaaataaattttgttgaaatgt 272  Q
    ||||||||| || ||  ||| ||||||||||||| |||||  ||||| ||||||||| || | ||||||||||||| |   | |||  ||||||||||||    
T  5188149 atatgggtgtctttgaggaatggtggttatggaagcaccctatctcttttcatttttcgtggatcctatttaataattcttaaaaaaattgttgaaatgt 5188248  T
Q  273 aatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtacttattaaata 354  Q
    ||||||||| ||||  |||| | | |||||||||||||| |||| ||||| ||||||| ||||||||||| |||||||||||    
T  5188249 aatgatataaaatttattgtggaaactatttaataatttcttttgaagtgctggattgaagaaaattggtgcttattaaata 5188330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 242 - 340
Target Start/End: Original strand, 22747107 - 22747205
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattg 340  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| | ||  ||| |||||||||||||    
T  22747107 ttaataaaataaataaaatttgttgaaatgtaatgatataaaattatttgtaagacctatttaataatttcttttgaggtactgggttggagaaaattg 22747205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 118 - 354
Target Start/End: Complemental strand, 3611275 - 3611033
Alignment:
Q  118 ggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctct 217  Q
    ||||| || ||||||||||||||||| |||||   |||| |  ||| | |||| |||||||| ||||||||| ||||| ||||||||| || ||||||||    
T  3611275 ggatgtttcacctatttagcaccacactaaataaacaccattattgaggagtataatatatgtgtgcctatgaagaagagtggttatgaaaacaccctct 3611176  T
Q  218 ctct--tcattttttgttggtcctatttaataaat--taa--ataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataattt 311  Q
    ||||  ||||||||   |||||  |||||||||||  |||  | |||  ||||| |||| ||||||| || ||||||||||| ||| |||||||||||||    
T  3611175 ctctcttcatttttcactggtctcatttaataaatcttaataaaaaaaattgttcaaatataatgatgtaaaattatttgtaagacttatttaataattt 3611076  T
Q  312 attttcaagtgttggattggagaaaattggtacttattaaata 354  Q
     |||| ||||||||| ||||| |||||||   |||||||||||    
T  3611075 cttttgaagtgttgggttggaaaaaattgacgcttattaaata 3611033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 127 - 348
Target Start/End: Complemental strand, 20969837 - 20969603
Alignment:
Q  127 acctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcacc--ctctctcttca 224  Q
    ||||||||||||||||||||| | ||||||| | |||||||||| || |||||||||  ||||||| ||||||| |||| || || |  ||||||||| |    
T  20969837 acctatttagcaccacattaagtaggcacccccattgtgaagtataacatatgggtgtttatggaggagggtggctatgaaaacatcatctctctcttta 20969738  T
Q  225 ttttttgttggtcctatttaataaat----------taaataaattttgttgaaa-tgtaatgatatagaattatttgtaggacctatttaataatttat 313  Q
     ||||  | | ||| |||||||||||          | ||||||||||||| ||| |||||||||||| ||||||| || |||||||||||||||||| |    
T  20969737 attttcatggatcccatttaataaatcttagtaaaatgaataaattttgttaaaaatgtaatgatataaaattattggtgggacctatttaataatttct 20969638  T
Q  314 tttcaagtgttggattggagaaaattggtacttat 348  Q
    ||||| ||| | | ||||||||||||||| |||||    
T  20969637 tttcaggtgctaggttggagaaaattggtgcttat 20969603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 127 - 351
Target Start/End: Original strand, 21208176 - 21208409
Alignment:
Q  127 acctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctct--cttca 224  Q
    ||||||||| ||||  ||||||| ||||||||  ||||| || | |||||||||||| ||||||||||| |||| ||||||| ||||||||||  |||||    
T  21208176 acctatttaacaccgtattaaataggcacccttattgtggagaataatatatgggtggctatggagaagagtggctatggaagcaccctctctttcttca 21208275  T
Q  225 ttttttgttggtcctatttaataaatt------aaataaattt-tgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttc 317  Q
    |||||  | ||||  ||| |||||||       ||||||||   || | |||| |||||||||| ||||||||||| |||| ||||| |||||||||||     
T  21208276 tttttcatgggtctcattaaataaatcttaataaaataaataaatgataaaatataatgatataaaattatttgtatgaccaatttagtaatttatttta 21208375  T
Q  318 aagtgttggattggagaaaattggtacttattaa 351  Q
    | ||||||| |||||||||| |||| ||||||||    
T  21208376 aggtgttgggttggagaaaagtggtgcttattaa 21208409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 242 - 338
Target Start/End: Complemental strand, 1040503 - 1040406
Alignment:
Q  242 ttaataaattaaataaattttgtt-gaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaat 338  Q
    |||||||| ||||||| |||| || ||||||| ||||||||||||||||| | |||| |||||||||||||||||| | ||||||  |||||||||||    
T  1040503 ttaataaaataaataatttttttttgaaatgtgatgatatagaattatttatgggacatatttaataatttattttgaggtgttgagttggagaaaat 1040406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 121 - 307
Target Start/End: Original strand, 2912698 - 2912897
Alignment:
Q  121 tgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctct--c 218  Q
    ||||| |||||||||| |||||||||||| ||||||  | ||||| |||  || ||||| ||||  |||||| ||||||| ||||||| || |||||  |    
T  2912698 tgattcacctatttagaaccacattaaataggcacctccattgtggagtgtaacatatgagtgctaatggaggagggtggctatggaagcaacctctctc 2912797  T
Q  219 tcttcattttttgttggtcctatttaataaat----------taaataaattttgtt-gaaatgtaatgatatagaattatttgtaggacctatttaata 307  Q
    |||||||||||  | ||||  |||||||||||          | ||||||||||||| ||||| |||||||||||| ||||||||||| | |||||||||    
T  2912798 tcttcatttttaatgggtctcatttaataaatcttagtaaaatgaataaattttgttagaaatataatgatatagagttatttgtagggcttatttaata 2912897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 97 - 191
Target Start/End: Original strand, 22746967 - 22747060
Alignment:
Q  97 actaagaccatatataatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatgga 191  Q
    ||||||| ||| ||||||||||| || || | ||||||||||| | ||||||| ||||| || |||||| |||| ||||||| |||| |||||||    
T  22746967 actaagatcatctataatggtgggtgcttcatctatttagcactatattaaataggcactct-gttgtggagtataatatatcggtggctatgga 22747060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 420
Target Start/End: Original strand, 20560930 - 20560995
Alignment:
Q  355 cttaaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccctgtacttgttaatc 420  Q
    ||||||||||||| | |||||||||||||  | || |||||||||| ||||||||| || ||||||    
T  20560930 cttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccctgtagttattaatc 20560995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 112 - 351
Target Start/End: Original strand, 29700961 - 29701210
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca 211  Q
    |||||||| || |||||||||||||||| | ||||||| ||||||| |  |||| || ||||||||||||||  ||||||||||||||| |||| ||  |    
T  29700961 aatggtgggtgcttaacctatttagcacaatattaaataggcacccccactgtggagcaaaatatatgggtgtatatggagaagggtggctatgaaagta 29701060  T
Q  212 ccctctctcttcattttttgttggtcctat----------ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctat 301  Q
    |||||||||||||||||||||||||| |||          ||||||| |||||||||||||||||||||||| ||||||| | |||||| | |||||||     
T  29701061 ccctctctcttcattttttgttggtcatatttaatgagtcttaataatttaaataaattttgttgaaatgtagtgatatatatttatttctgggacctag 29701160  T
Q  302 ttaataatttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
    |||||||||| |||| |  || ||| |||||||||||||||  |||||||    
T  29701161 ttaataatttcttttaagatgctgggttggagaaaattggtgtttattaa 29701210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 172 - 351
Target Start/End: Complemental strand, 50378339 - 50378148
Alignment:
Q  172 aatatatgggtgcctatggagaagggtggttatggaatcaccctc--tctcttcattttttgttggtcctatttaataaat----------taaataaat 259  Q
    |||||||||||  |||||||||||||||| ||||||| |||||||  |||||||||||||  | |||| ||||||||||||          |||||||||    
T  50378339 aatatatgggtagctatggagaagggtggctatggaagcaccctcactctcttcatttttcatgggtcatatttaataaatattaataaaataaataaat 50378240  T
Q  260 tttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| | ||| ||||||||||||||||||| ||||||||    
T  50378239 tttgttgaaatgtaatgatataaaattatttataggacctatttaataatttcttttgaggtgctggattggagaaaattggtgcttattaa 50378148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 102 - 354
Target Start/End: Original strand, 33016375 - 33016635
Alignment:
Q  102 gaccatatataatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggt 201  Q
    |||||| || |||||| | || ||||| |||||||||||||||||||| ||||||  | || || |||||||||||||||||| ||||||||| ||        
T  33016375 gaccatctacaatggtaggtgcttaacttatttagcaccacattaaataggcacctccattttggagtaaaatatatgggtgcttatggagaaagg---- 33016470  T
Q  202 tatggaatcaccctctctct--tcatttt-ttgttggtcctatttaataaa----------ttaaataaattttgttgaaatgtaatgatatagaattat 288  Q
     |||||| ||||||||||||  ||||||| |||||||||||||||||||||          |||||||||||||||||||||  ||||||||| ||||||    
T  33016471 -atggaagcaccctctctctcttcattttgttgttggtcctatttaataaatcttagtaaattaaataaattttgttgaaattcaatgatataaaattat 33016569  T
Q  289 ttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtacttattaaata 354  Q
    |||| | |||||||||||||||| |||| | ||||||| ||||||||||||| || |||| |||||    
T  33016570 ttgtggaacctatttaataatttcttttgaggtgttgggttggagaaaattgatatttatcaaata 33016635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 101 - 339
Target Start/End: Complemental strand, 8259569 - 8259319
Alignment:
Q  101 agaccatatataatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtgg 200  Q
    ||||||| || |||||||| || || | |||||||||| || ||||||| ||||||| | |||||  ||| |||||||||||| ||||||||||||||||    
T  8259569 agaccatctacaatggtgggtgcttcatctatttagcatcatattaaataggcacccccattgtggggtataatatatgggtggctatggagaagggtgg 8259470  T
Q  201 ttatggaatcaccctct--ctcttcattttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaattat 288  Q
    |||||||| ||||||||  ||||||||||||  | ||||  |||||||||||          ||||||||||||||||||||||||||||||| || |||    
T  8259469 ttatggaagcaccctctccctcttcatttttcatgggtcacatttaataaattttaataaaataaataaattttgttgaaatgtaatgatataaaaatat 8259370  T
Q  289 ttgtaggacctatttaataatttattttcaagtgttggattggagaaaatt 339  Q
    |||||  |||||||| ||||||| |||| | ||| ||||||| ||||||||    
T  8259369 ttgtaaaacctatttgataatttcttttgaggtgctggattgtagaaaatt 8259319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 241 - 354
Target Start/End: Complemental strand, 15342824 - 15342711
Alignment:
Q  241 tttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattg 340  Q
    ||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| ||| |||||||||    
T  15342824 tttaataaaataaataaattttgttgaaatataatgatataaaattatttgtaggacctatttaataatttattttaaagtgctgggttgaagaaaattg 15342725  T
Q  341 gtacttattaaata 354  Q
    ||  ||||||||||    
T  15342724 gtgtttattaaata 15342711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 167 - 351
Target Start/End: Complemental strand, 50377968 - 50377773
Alignment:
Q  167 agtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctcttcattttttgttggtcctatttaataaat----------taaata 256  Q
    |||| ||||||||||||||||||||| ||||||||||||||| ||| ||||||||| ||||||||  ||| | |||||||||||          |||| |    
T  50377968 agtataatatatgggtgcctatggaggagggtggttatggaagcactctctctctttattttttgcgggttccatttaataaatcttaataaagtaaaga 50377869  T
Q  257 aattttgttgaaatgtaa-tgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
    |||||| |||||| |||| |||||||||| ||||||| |||||||||||||||||| |||| | ||| ||| ||||||||||||||||||||||||    
T  50377868 aattttattgaaaggtaaatgatatagaactatttgtgggacctatttaataatttcttttgaggtgctgggttggagaaaattggtacttattaa 50377773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 242 - 348
Target Start/End: Complemental strand, 32714225 - 32714119
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattgg 341  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||| | ||| ||| ||||||||||||||    
T  32714225 ttaataaattaaataaattttgttgaaatgtaatgatataaaattatttgtaggacttatttaataatttcttttgaggtgatgggttggagaaaattgg 32714126  T
Q  342 tacttat 348  Q
    | |||||    
T  32714125 tgcttat 32714119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 127 - 351
Target Start/End: Complemental strand, 16255538 - 16255303
Alignment:
Q  127 acctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctct--ctcttca 224  Q
    |||||||||||||||||||||||   ||||||| || ||||||| |||||||||||||||||| ||||| |||| ||||||| ||||||||  |||||||    
T  16255538 acctatttagcaccacattaaataa-caccctcattatgaagtataatatatgggtgcctatgtagaagagtggctatggaagcaccctctttctcttca 16255440  T
Q  225 ttttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttatt 314  Q
     ||||     |||| |||||||||||          ||||||||||||||||||||| ||||||||||||||||||||  |||  |||||||||||| ||    
T  16255439 attttcacaagtcccatttaataaatcttaataaaataaataaattttgttgaaatggaatgatatagaattatttgtgagacaaatttaataatttctt 16255340  T
Q  315 ttcaagtgttggattggagaaaattggtacttattaa 351  Q
    || | ||| ||| ||||||||||||| | ||||||||    
T  16255339 ttgaggtgctgggttggagaaaattgatgcttattaa 16255303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 241 - 351
Target Start/End: Complemental strand, 25389037 - 25388927
Alignment:
Q  241 tttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattg 340  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||| |||| | ||||||| ||||| |||||||    
T  25389037 tttaataaaataaataaattttgttgaaatgtaatgatataaaattatttataggacctatttagtaatttcttttaaggtgttgggttggaaaaaattg 25388938  T
Q  341 gtacttattaa 351  Q
     | ||||||||    
T  25388937 atgcttattaa 25388927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 242 - 351
Target Start/End: Complemental strand, 20381187 - 20381078
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattgg 341  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||  |||| | ||| ||| |||||||||||||     
T  20381187 ttaataaaataaataaattttgttgaaatgtaatgatataaaattatttgtgggccctatttaataattccttttaaggtgctgggttggagaaaattga 20381088  T
Q  342 tacttattaa 351  Q
    | ||||||||    
T  20381087 tgcttattaa 20381078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 242 - 338
Target Start/End: Complemental strand, 5959322 - 5959226
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaat 338  Q
    |||||||| ||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||| ||| |   |||||||||||||||||    
T  5959322 ttaataaaataaataaattttgttgaaatgtaacaatataaaattatttgtaggacctatttaataatttactttgagacgttggattggagaaaat 5959226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 243 - 351
Target Start/End: Original strand, 14625104 - 14625212
Alignment:
Q  243 taataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggt 342  Q
    ||||||| ||||||||| ||||| || |||||||||||| |||||||||| ||||||||||||||||||||||| | ||| |||||||||||||| ||||    
T  14625104 taataaaataaataaatgttgttaaagtgtaatgatataaaattatttgtgggacctatttaataatttattttgaggtgctggattggagaaaaatggt 14625203  T
Q  343 acttattaa 351  Q
      |||||||    
T  14625204 gtttattaa 14625212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 240 - 339
Target Start/End: Original strand, 48379606 - 48379705
Alignment:
Q  240 atttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaatt 339  Q
    |||||||||| ||||||||||||||||||||||||||||| | || ||||||| |||||||||||||||||| |||| | ||||| | ||||||||||||    
T  48379606 atttaataaaataaataaattttgttgaaatgtaatgatacaaaaatatttgtgggacctatttaataatttcttttaaggtgtttggttggagaaaatt 48379705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 129 - 351
Target Start/End: Complemental strand, 24120430 - 24120196
Alignment:
Q  129 ctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcacc--ctctctcttcatt 226  Q
    ||||||||||||||||||||| || |||| | ||||| || | ||| |||||| | |||||||||| | ||| |||| || ||||  |||||||||||||    
T  24120430 ctatttagcaccacattaaataggaacccccattgtggagaataatgtatgggcggctatggagaaagatggctatgaaagcaccatctctctcttcatt 24120331  T
Q  227 ttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttatttt 316  Q
    |||  | ||||| | |||||||||          ||||||||| ||||| ||||||||||||||| |||||| ||||||| |||||||| ||||||||||    
T  24120330 tttcttgggtcccagttaataaatcttaataaaataaataaatgttgttaaaatgtaatgatataaaattatctgtaggatctatttaaaaatttatttt 24120231  T
Q  317 caagtgttggattggagaaaattggtacttattaa 351  Q
     |  |||||  |||||||||| || ||||||||||    
T  24120230 gagatgttgagttggagaaaagtgatacttattaa 24120196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 99 - 340
Target Start/End: Original strand, 51776541 - 51776793
Alignment:
Q  99 taagaccatatataatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggt 198  Q
    |||||||||  |||||||||| || || ||||||||||||||||||||||| |||| ||   || ||||||| || |||||| ||| ||||||| | |||    
T  51776541 taagaccatccataatggtgggtgtttcacctatttagcaccacattaaataggcaaccctattatgaagtataacatatggatgcttatggaggatggt 51776640  T
Q  199 ggttatggaatcaccctctctcttcattttttgttggtcctatttaataaat----------taaataaattttgtt-gaaatgtaatgatatagaatta 287  Q
    || ||||||| ||||||||||||||| ||||  | ||||  |||||||||||          | ||||||||| |||  |||||||||| |||||| |||    
T  51776641 ggctatggaaacaccctctctcttcaattttcatgggtcacatttaataaatcttagtaaaatgaataaatttcgttaaaaatgtaatggtatagagtta 51776740  T
Q  288 tttgtaggacctatttaataatttattttcaagtgttggattggagaaaattg 340  Q
    ||| |  | |||| |||||||||| |||| | ||||||| |||||||||||||    
T  51776741 tttatgcggcctagttaataatttcttttgaggtgttgggttggagaaaattg 51776793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 127 - 291
Target Start/End: Original strand, 4085533 - 4085699
Alignment:
Q  127 acctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctcttcatt 226  Q
    ||||||| |||||||||||||||  | |||  | || || ||||||||||||||||| ||||||||||| || ||||| |||  | ||||||||||||||    
T  4085533 acctattgagcaccacattaaatatgaacctccattatggagtaaaatatatgggtgtctatggagaagagtagttatcgaagtatcctctctcttcatt 4085632  T
Q  227 ttttgttggtcctatttaataaa--ttaaataaattttgttgaaatgtaatgatatagaattatttg 291  Q
    ||||    |||  |||||||| |  ||||  |||||||||||||||||||||||||| |||||||||    
T  4085633 ttttacgagtctcatttaatagatcttaataaaattttgttgaaatgtaatgatataaaattatttg 4085699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 251 - 351
Target Start/End: Complemental strand, 9693983 - 9693883
Alignment:
Q  251 taaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtacttatta 350  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||  |||||| || | | ||||||  ||| | ||||||||| |||||||    
T  9693983 taaataaattttgttgaaatgtaatgatatagaattatttgtggaacctattttgtaatttcttgtgaggtgttgtgttgaataaaattggtgcttatta 9693884  T
Q  351 a 351  Q
    |    
T  9693883 a 9693883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 112 - 316
Target Start/End: Complemental strand, 12140989 - 12140775
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca 211  Q
    |||||||| || || ||||||||| ||| | ||| ||| |||| |||  ||||| |||| ||||| || |||||| | ||||||||||| ||||||| ||    
T  12140989 aatggtgggtgtttcacctatttaacactatatttaataggcatccttattgtggagtataatatttgtgtgcctgtcgagaagggtggctatggaacca 12140890  T
Q  212 ccctctctcttcattttttgttggtcctatttaata----------aattaaataaattt-tgttgaaatgtaatgatatagaattatttgtaggaccta 300  Q
    |||||||||||||  |||||| |  |||||||||||          |||||||||||||| | |||||||||||||||||| |||||||||| |||| ||    
T  12140889 ccctctctcttcaccttttgtggaccctatttaataaatcataatgaattaaataaatttatattgaaatgtaatgatata-aattatttgtgggactta 12140791  T
Q  301 tttaataatttatttt 316  Q
    |||| |||||| ||||    
T  12140790 tttagtaatttctttt 12140775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 355 - 450
Target Start/End: Original strand, 28533779 - 28533874
Alignment:
Q  355 cttaaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccctgtacttgttaatccccccaaaatttccttgcaattattaatca 450  Q
    ||||||||||| | | |||||||||||||||||||||||||||||| |||||| |||||  |||||| ||||||  |||| |||||||| ||||||    
T  28533779 cttaaatatgtgtttcgtccctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaaccttccctgcaattactaatca 28533874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 112 - 233
Target Start/End: Original strand, 47024316 - 47024439
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatca 211  Q
    |||||||| ||  ||| ||||||  ||||||||||||| ||||||  | ||||| |||||||||||||| ||||||| ||||| ||||| ||| ||| ||    
T  47024316 aatggtgggtgcgtaatctatttcacaccacattaaataggcacctccattgtggagtaaaatatatggatgcctatagagaaaggtggctatagaaaca 47024415  T
Q  212 ccctctctc--ttcattttttgtt 233  Q
    |||||||||  |||||||||||||    
T  47024416 ccctctctctgttcattttttgtt 47024439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 292
Target Start/End: Complemental strand, 18236556 - 18236431
Alignment:
Q  174 tatatgggtgcctatggagaagggtggttatggaatcaccctctctcttcattttttgttggtcctatttaataaat-taaataaatt--------ttgt 264  Q
    ||||||| |||||||| |||||||||| ||||||| | |  |||||||||||||||||| |||| |||||||||||| | ||||||||        ||||    
T  18236556 tatatggatgcctatgaagaagggtggctatggaagcgc--tctctcttcattttttgtcggtcatatttaataaatcttaataaattaaataaatttgt 18236459  T
Q  265 tgaaatgtaatgatatagaattatttgt 292  Q
    ||||| ||||||||||||||||||||||    
T  18236458 tgaaaagtaatgatatagaattatttgt 18236431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 351
Target Start/End: Original strand, 39923268 - 39923496
Alignment:
Q  124 ttaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctcttc 223  Q
    |||||||||||| |||| |||||||| ||||||| | || ||||||||| |||||| ||| |||| ||||| ||||||| | ||| |||| |||||||      
T  39923268 ttaacctatttaacaccgcattaaatgggcaccc-cattatgaagtaaa-tatatgagtgtctatagagaatggtggttgtagaaacaccttctctctca 39923365  T
Q  224 attttttgttggtcctattt----------aataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttat 313  Q
    ||||||||  ||| | ||||          ||||||||||||||||||||||||||||||   ||||  ||||||||    || |||||||||||||| |    
T  39923366 attttttgcaggttcaatttaataaatcttaataaattaaataaattttgttgaaatgta---atatgtaattattt----gagctatttaataatttct 39923458  T
Q  314 tttcaagtgttggattggagaaaattggtacttattaa 351  Q
    ||| | ||||||| || ||||||||||||| |||||||    
T  39923459 tttgaggtgttgggtttgagaaaattggtatttattaa 39923496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 453 - 582
Target Start/End: Complemental strand, 6345624 - 6345495
Alignment:
Q  453 taattacttttgtttgcatatgtgtcaagtgattacttatatggcactgacgtggctctagctgactgggtaaggacctcactgactcagctttttgaac 552  Q
    ||||||||| |  |||| |||||| || ||||||||| || ||||| ||||||||| | | |||||||||| | ||| |  |||||||||||||||| ||    
T  6345624 taattacttcttattgcctatgtggcacgtgattactgatgtggcaatgacgtggcaccatctgactgggtcaagactttgctgactcagctttttgtac 6345525  T
Q  553 ttgaacttctcattttgcccttaatgaaac 582  Q
     |||||||| |||||| ||||||| |||||    
T  6345524 atgaacttcccattttacccttaacgaaac 6345495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 9694164 - 9694055
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggt-gcctatggagaagggtggttatggaatc 210  Q
    |||||||| || || ||||||||||||||| | ||||| ||||||| | ||||| |||| || || ||||| |||||||||||||||||| || |||| |    
T  9694164 aatggtgggtgcttcacctatttagcaccatactaaataggcaccc-cattgtggagtataacatttgggttgcctatggagaagggtggctaaggaagc 9694066  T
Q  211 accctctctct 221  Q
    |||||||||||    
T  9694065 accctctctct 9694055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 48941500 - 48941396
Alignment:
Q  251 taaataaattttg-ttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtacttatt 349  Q
    ||||||||||||  |||||||||||||||||  |||||||| ||| | ||||||  |||||| ||||   ||| ||| ||||||||||||||| ||||||    
T  48941500 taaataaatttttattgaaatgtaatgatatgaaattatttatagaatctatttcgtaatttcttttgtggtgctgggttggagaaaattggtgcttatt 48941401  T
Q  350 aaata 354  Q
    |||||    
T  48941400 aaata 48941396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 253 - 316
Target Start/End: Complemental strand, 33737250 - 33737187
Alignment:
Q  253 aataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttatttt 316  Q
    ||||||| ||||||||||||||| ||||| |||||| ||| || ||||||||||||||| ||||    
T  33737250 aataaatcttgttgaaatgtaattatataaaattatatgtggggcctatttaataatttctttt 33737187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 42693572 - 42693481
Alignment:
Q  130 tatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctct 221  Q
    |||||||||||| ||||||| ||||||  |  |||| |||| || |||||||||  ||||||| ||||||| ||||||| ||||||||||||    
T  42693572 tatttagcaccatattaaataggcacctccaatgtggagtataacatatgggtgtttatggaggagggtggctatggaagcaccctctctct 42693481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 43728716 - 43728626
Alignment:
Q  101 agaccatatataatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatgga 191  Q
    ||||||| || ||||||||||| || | ||||||||||||||||||||| ||||||  | ||||| |||  || ||||||| |||||||||    
T  43728716 agaccatttacaatggtggatgcttcatctatttagcaccacattaaataggcacctccattgtggagtgtaacatatgggcgcctatgga 43728626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 14624964 - 14625057
Alignment:
Q  98 ctaagaccatatataatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatgga 191  Q
    |||||||||| || |||||||| || || ||||||||||||||||||||||  ||||| |   ||||| || | |||||||||||| |||||||    
T  14624964 ctaagaccatctacaatggtgggtgcttcacctatttagcaccacattaaagaggcactcctattgtggagaataatatatgggtggctatgga 14625057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 283 - 351
Target Start/End: Complemental strand, 26450956 - 26450889
Alignment:
Q  283 aattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
    |||||||||||||||||||| |||||||| |||| | ||| ||| ||||||||||| ||| ||||||||    
T  26450956 aattatttgtaggacctattcaataattt-ttttgaggtgctgggttggagaaaatgggtgcttattaa 26450889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 25389802 - 25389755
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctc 159  Q
    |||||||| || |||||||||||||||||||||||||| | |||||||    
T  25389802 aatggtgggtgcttaacctatttagcaccacattaaatagacaccctc 25389755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 32714346 - 32714249
Alignment:
Q  129 ctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctcttcatttt 228  Q
    ||||||| ||||| ||||||| |||| ||  |||||  |||| |||||||||||| ||||| || ||||| ||||||| | |||||||||||||||||||    
T  32714346 ctatttatcaccatattaaataggcatccctgttgtagagtataatatatgggtggctatgaaggagggt-gttatgg-agcaccctctctcttcatttt 32714249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 351
Target Start/End: Complemental strand, 42693430 - 42693331
Alignment:
Q  253 aataaattttgttgaaa-tgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
    ||||||||||||| ||| |||||||||||||| ||||| || |  | |||| |||||||| |||| | ||| | | ||||||||||||||| ||||||||    
T  42693430 aataaattttgttaaaaatgtaatgatatagagttattggtggagcttattaaataatttcttttgaggtgctaggttggagaaaattggtgcttattaa 42693331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 191
Target Start/End: Original strand, 48379483 - 48379561
Alignment:
Q  112 aatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatgga 191  Q
    |||||||| || || ||||||||||||||||||||||| ||||||| | ||||  |||| |||| ||||||| |||||||    
T  48379483 aatggtgggtgcttcacctatttagcaccacattaaataggcaccc-cattgtagagtataatacatgggtggctatgga 48379561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 26451854 - 26451808
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattat 288  Q
    |||||||| | ||||||||||| ||||||||||||||||| ||||||    
T  26451854 ttaataaaattaataaattttgatgaaatgtaatgatataaaattat 26451808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 34312686 - 34312732
Alignment:
Q  256 aaattttgttgaaatgtaatgatatagaattatttgtaggacctatt 302  Q
    ||||||||||||||||||| |||||||||| ||||||| ||| ||||    
T  34312686 aaattttgttgaaatgtaacgatatagaatgatttgtatgacatatt 34312732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 348
Target Start/End: Complemental strand, 43728543 - 43728463
Alignment:
Q  267 aaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtacttat 348  Q
    ||||||||||||||||| |||||||| || | ||||| |||| || |||| | ||||| | ||||||||||||| |||||||    
T  43728543 aaatgtaatgatatagagttatttgtggggcttattttataaatt-tttttaggtgttaggttggagaaaattgatacttat 43728463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 1243814 - 1243774
Alignment:
Q  262 tgttgaaatgtaatgatatagaattatttgtaggacctatt 302  Q
    |||||||||||||||||||| |||||||||| ||| |||||    
T  1243814 tgttgaaatgtaatgatataaaattatttgtgggatctatt 1243774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 129 - 250
Target Start/End: Complemental strand, 33737366 - 33737244
Alignment:
Q  129 ctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctct--tcatt 226  Q
    |||||||||||||||||| || ||||| | | ||||| |||| |||| ||| ||| ||| |||||| | ||  |||| || ||||||||||||  |||||    
T  33737366 ctatttagcaccacattagataggcactc-cattgtggagtataatacatgagtggctacggagaaagatgactatgaaagcaccctctctctcttcatt 33737268  T
Q  227 ttttgttggtcctatttaataaat 250  Q
    |||  | |||||||||||||||||    
T  33737267 tttcatgggtcctatttaataaat 33737244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 8e-38; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 130 - 351
Target Start/End: Complemental strand, 7315430 - 7315196
Alignment:
Q  130 tatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctct--tcattt 227  Q
    ||||||||||||  |||||| | ||||||| ||||| |||| |||| ||||||| |||||||||||||||  ||||||| ||||||||||||  | ||||    
T  7315430 tatttagcaccatgttaaatagacaccctcattgtggagtataatacatgggtggctatggagaagggtgactatggaagcaccctctctctcttaattt 7315331  T
Q  228 tttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatatagaattatttgta-ggacctatttaataatttatttt 316  Q
    |   | ||||| |||||||||||          |||||||||||||||||||||||||||| || ||||||||||  |||||||||||||||||| ||||    
T  7315330 tccatgggtcccatttaataaatcttaataaaataaataaattttgttgaaatgtaatgatgtaaaattatttgtgtggacctatttaataatttctttt 7315231  T
Q  317 caagtgttggattggagaaaattggtacttattaa 351  Q
     | ||||||||||||||||||||||| ||||||||    
T  7315230 aaggtgttggattggagaaaattggtgcttattaa 7315196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 95 - 325
Target Start/End: Original strand, 25322801 - 25323042
Alignment:
Q  95 tcactaagaccatatataatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaa 194  Q
    |||||||||||||  |||||| |||||| |||||||||||| ||||||||||||| ||||||||| ||||  |||| |||| || | || ||||||||||    
T  25322801 tcactaagaccatccataatgatggatgtttaacctatttaacaccacattaaataggcaccctcattgtagagtataatacatcgatggctatggagaa 25322900  T
Q  195 gggt-ggttatggaatcacc--ctctctcttcattttttgttggtcctatttaataaat----------taaataaattttgttgaaatgtaatgatata 281  Q
    |||| || ||  ||| ||||  ||||||||||||||||  | ||||| |||||||||||          |||||||||||||||||||||||||||||||    
T  25322901 gggttggcta--gaagcaccttctctctcttcatttttcatgggtcccatttaataaatcttaataaaataaataaattttgttgaaatgtaatgatata 25322998  T
Q  282 gaattatttgtaggacctatttaataatttattttcaagtgttg 325  Q
     |||||||||| |||| ||||||||||||| |||| | ||||||    
T  25322999 aaattatttgtgggacatatttaataatttcttttaaggtgttg 25323042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 101 - 244
Target Start/End: Original strand, 9548462 - 9548607
Alignment:
Q  101 agaccatatataatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggtgg 200  Q
    ||||||| || ||||||||||| |||||||||||||||||||||||||| | ||||| | ||||| |||||| |||||| ||||||||| ||||||||||    
T  9548462 agaccatctacaatggtggatgcttaacctatttagcaccacattaaatagacaccc-cattgtggagtaaactatatgagtgcctatgaagaagggtgg 9548560  T
Q  201 ttatggaatcaccctc--tctcttca-ttttttgttggtcctattta 244  Q
     ||||||| || ||||  |||||||| ||||||||||||||||||||    
T  9548561 ctatggaagcaacctctatctcttcatttttttgttggtcctattta 9548607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 242 - 356
Target Start/End: Original strand, 38935243 - 38935357
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattgg 341  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||  ||| | ||| ||| ||||||||||||||    
T  38935243 ttaataaaataaataaattttgttgaaatgtaaagatatagaattatttgtgagacctatttaataatttcgtttgaggtgctgggttggagaaaattgg 38935342  T
Q  342 tacttattaaatact 356  Q
    | |||| ||||||||    
T  38935343 tgcttagtaaatact 38935357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 242 - 351
Target Start/End: Complemental strand, 9032641 - 9032532
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattgg 341  Q
    |||||||| ||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||| | |||| | ||||||| |||||||||||| |    
T  9032641 ttaataaaataaataaattttgttgaaacgtaatgatataaaattatttgtgggacctatttaataatctcttttaaggtgttgggttggagaaaattag 9032542  T
Q  342 tacttattaa 351  Q
    | ||||||||    
T  9032541 tgcttattaa 9032532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 253 - 339
Target Start/End: Original strand, 5732721 - 5732807
Alignment:
Q  253 aataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaatt 339  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||| | ||| ||||||||||||||||    
T  5732721 aataaattttgttgaaatgtaatgatatagaattatttgtgggacttatttaataattttttttaaggtgctggattggagaaaatt 5732807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 241 - 316
Target Start/End: Original strand, 15464031 - 15464106
Alignment:
Q  241 tttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttatttt 316  Q
    ||||||||| ||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||| ||||    
T  15464031 tttaataaaataaataaattttgttgaaatgtagtgatttaaaattatttgtaggacctatttaataatttctttt 15464106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 355 - 457
Target Start/End: Complemental strand, 15075258 - 15075156
Alignment:
Q  355 cttaaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccctgtacttgttaatccccccaaaatttccttgcaattattaatcactta 454  Q
    ||||||||||||||||||||| |||||||||| | ||||||||||| ||| ||||||||  ||||||  ||||||||||| |||||||| |||||| |||    
T  15075258 cttaaatatgtctatagtcccagcaaatagggtttgtttgaattttagtctctgtacttactaatccttccaaaatttccatgcaattactaatcattta 15075159  T
Q  455 att 457  Q
    |||    
T  15075158 att 15075156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 355 - 450
Target Start/End: Complemental strand, 14244090 - 14243995
Alignment:
Q  355 cttaaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccctgtacttgttaatccccccaaaatttccttgcaattattaatca 450  Q
    ||||||||||| |||||  |||||||||||||||||||||||||||||||| ||||||| ||| |||| ||| ||||||| ||||| || ||||||    
T  14244090 cttaaatatgtgtatagctcctgcaaatagggctcgtttgaatttttgtccatgtacttattattccctccacaatttccctgcaaatactaatca 14243995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 99 - 354
Target Start/End: Original strand, 19494728 - 19494974
Alignment:
Q  99 taagaccatatataatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggt 198  Q
    |||||||||  | |||| |||||| || | |||||||| |||| ||||||| ||||||| | ||||| |||| |||||||||||| |||||||||| |||    
T  19494728 taagaccatccacaatgatggatgcttcatctatttagtaccatattaaataggcacccccattgtggagtataatatatgggtgactatggagaatggt 19494827  T
Q  199 ggttatggaatcaccct--ctctcttcattttttgttggtcctatttaataaat-taaataaattttgttgaaatgtaatgatatagaattatttgtagg 295  Q
    || ||||||| ||| ||  ||||||||||||||  |  |||| ||||||||||| | ||||||             |||||||||| |||||||||||      
T  19494828 ggctatggaagcactctccctctcttcatttttcatgagtcccatttaataaatcttaataaa------------ataatgatataaaattatttgtata 19494915  T
Q  296 acctatttaataatttattttcaagtgttggattggagaaaattggtacttattaaata 354  Q
    || ||||||||||||| |||| |  |||||| ||||||||||| ||| |||||||||||    
T  19494916 acttatttaataatttcttttgagatgttgggttggagaaaatcggtgcttattaaata 19494974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 246 - 349
Target Start/End: Original strand, 20638589 - 20638692
Alignment:
Q  246 taaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtact 345  Q
    |||| ||||||||||||||  ||||||||||||||||| ||||||||| ||||||||||||||||| |||| | ||  | | || |||||||||||| ||    
T  20638589 taaaataaataaattttgtaaaaatgtaatgatatagagttatttgtaagacctatttaataatttcttttgaggtactaggttagagaaaattggtgct 20638688  T
Q  346 tatt 349  Q
    ||||    
T  20638689 tatt 20638692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 242 - 342
Target Start/End: Complemental strand, 840249 - 840149
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattgg 341  Q
    |||||||| ||| ||||| ||||| ||||||||| ||||| ||||||||||  ||| |||||||||||||||||| | ||||||| ||| |||||| |||    
T  840249 ttaataaaataagtaaatgttgttaaaatgtaataatataaaattatttgtgagacttatttaataatttattttgaggtgttgggttgaagaaaaatgg 840150  T
Q  342 t 342  Q
    |    
T  840149 t 840149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 366 - 440
Target Start/End: Complemental strand, 34405066 - 34404992
Alignment:
Q  366 ctatagtccctgcaaatagggctcgtttgaatttttgtccctgtacttgttaatccccccaaaatttccttgcaa 440  Q
    ||||||||||||||||||||||||  ||||||||| |||| |||||||  |||||| |||||||||||| |||||    
T  34405066 ctatagtccctgcaaatagggctcaattgaattttagtccatgtacttactaatcctcccaaaatttccctgcaa 34404992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 9032808 - 9032696
Alignment:
Q  96 cactaagaccatatataatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaag 195  Q
    ||||||||||||  | |||||||| || || ||||||||| ||||||||||||| ||||||    || || |||| |||| ||||||| |||||||||||    
T  9032808 cactaagaccatccaaaatggtgggtgcttcacctatttaacaccacattaaataggcacctctattatggagtataatacatgggtggctatggagaag 9032709  T
Q  196 ggtggttatggaa 208  Q
    ||||| |||||||    
T  9032708 ggtggctatggaa 9032696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 270 - 339
Target Start/End: Original strand, 14169938 - 14170007
Alignment:
Q  270 tgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaatt 339  Q
    ||||||||| || |||||||||| | |||||||||||||||| |||| | ||||||| ||||||||||||    
T  14169938 tgtaatgatgtataattatttgtcgaacctatttaataatttcttttaaggtgttgggttggagaaaatt 14170007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 38935043 - 38935148
Alignment:
Q  117 tggatgattaacctatttagcaccacattaaattggcaccc-tcgttgtgaagtaaaatatatgggtgcctatggagaagggtggttatggaatcaccct 215  Q
    |||||| || || ||||||||||||||||||||   ||||| || ||||| |||| |||||||||||| ||| |||||| |||||||||| || |||| |    
T  38935043 tggatgcttcacatatttagcaccacattaaataaacacccctcattgtggagtataatatatgggtgtctagggagaatggtggttatgaaagcacctt 38935142  T
Q  216 ctctct 221  Q
    ||||||    
T  38935143 ctctct 38935148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 455
Target Start/End: Original strand, 13646082 - 13646182
Alignment:
Q  355 cttaaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccctgtacttgttaatccccccaaaatttccttgcaattattaatcactta 454  Q
    ||||||||||| |  |||||||||||||||| |||  ||||||||| ||||||||||||  |||||| |||||  |  || ||||| |||||||||||||    
T  13646082 cttaaatatgtgtccagtccctgcaaataggcctcagttgaattttagtccctgtacttactaatcctcccaatttgcccctgcaaatattaatcactta 13646181  T
Q  455 a 455  Q
    |    
T  13646182 a 13646182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 455
Target Start/End: Complemental strand, 13652191 - 13652091
Alignment:
Q  355 cttaaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccctgtacttgttaatccccccaaaatttccttgcaattattaatcactta 454  Q
    ||||||||||| |  |||||||||||||||| |||  ||||||||| ||||||||||||  |||||| |||||  |  || ||||| |||||||||||||    
T  13652191 cttaaatatgtgtccagtccctgcaaataggcctcagttgaattttagtccctgtacttactaatcctcccaatttgcccctgcaaatattaatcactta 13652092  T
Q  455 a 455  Q
    |    
T  13652091 a 13652091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 356 - 491
Target Start/End: Original strand, 15073979 - 15074127
Alignment:
Q  356 ttaaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccctgtacttgttaatccccccaaaatttccttgcaattattaatcactt-- 453  Q
    ||||||||||| ||| | |||||| |||| ||||||||||||||| ||||||| ||||  |||||   |||||||||||  ||||||  |||||||||      
T  15073979 ttaaatatgtcgataatacctgcagatagagctcgtttgaattttagtccctgcacttactaatcattccaaaatttccccgcaatttctaatcacttga 15074078  T
Q  454 -----------aattacttttgtttgcatatgtgtcaagtgattactta 491  Q
               ||||||||||||||||||||||| ||||||||||||||    
T  15074079 aattttgtcctaattacttttgtttgcatatgtggcaagtgattactta 15074127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 356 - 421
Target Start/End: Complemental strand, 17640320 - 17640255
Alignment:
Q  356 ttaaatatgtctatagtccctgcaaatagggctcgtttgaatttttgtccctgtacttgttaatcc 421  Q
    |||||||||||||| |||| |||||||| |||||  ||||||||| ||| |||||||| |||||||    
T  17640320 ttaaatatgtctatcgtccttgcaaataaggctcaattgaattttagtctctgtacttattaatcc 17640255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 22705719 - 22705667
Alignment:
Q  251 taaataaattttgttgaaatgtaatgatatagaattatttgtaggacctattt 303  Q
    ||||||||||||||||||||||| ||| ||| |||||||||| | ||||||||    
T  22705719 taaataaattttgttgaaatgtattgacataaaattatttgtggaacctattt 22705667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 5732555 - 5732612
Alignment:
Q  99 taagaccatatataatggtggatgattaacctatttagcaccacattaaattggcacc 156  Q
    |||||||||  |||||  ||| || |||||||||||||||||||||||||| ||||||    
T  5732555 taagaccatccataataatgggtgcttaacctatttagcaccacattaaataggcacc 5732612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 5803073 - 5803130
Alignment:
Q  99 taagaccatatataatggtggatgattaacctatttagcaccacattaaattggcacc 156  Q
    |||||||||  |||||  ||| || |||||||||||||||||||||||||| ||||||    
T  5803073 taagaccatccataataatgggtgcttaacctatttagcaccacattaaataggcacc 5803130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 292
Target Start/End: Original strand, 33047867 - 33047916
Alignment:
Q  243 taataaattaaataaattttgttgaaatgtaatgatatagaattatttgt 292  Q
    ||||||| |||||||||| ||||  ||| |||||||||||||||||||||    
T  33047867 taataaaataaataaattgtgtttcaatataatgatatagaattatttgt 33047916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 400
Target Start/End: Original strand, 43284586 - 43284631
Alignment:
Q  355 cttaaatatgtctatagtccctgcaaatagggctcgtttgaatttt 400  Q
    |||||||||||||||||||||||||||  ||||||  |||||||||    
T  43284586 cttaaatatgtctatagtccctgcaaaatgggctcaattgaatttt 43284631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 529
Target Start/End: Original strand, 43284687 - 43284744
Alignment:
Q  472 atgtgtcaagtgattacttatatggcactgacgtggctctagctgactgggtaaggac 529  Q
    ||||| ||||||||||||||  ||||| |||| ||||  |||||||||||||||||||    
T  43284687 atgtggcaagtgattacttacgtggcaatgacatggcattagctgactgggtaaggac 43284744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 256 - 356
Target Start/End: Original strand, 43652645 - 43652745
Alignment:
Q  256 aaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtacttattaaatac 355  Q
    |||| ||||||||||||||||||||| |||||||| |   | ||||||| |||||| | ||   ||| ||| |||||||||||||||  ||||||| |||    
T  43652645 aaatgttgttgaaatgtaatgatataaaattatttatgatatctatttagtaatttctgttgcggtgctgggttggagaaaattggtgtttattaagtac 43652744  T
Q  356 t 356  Q
    |    
T  43652745 t 43652745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1940 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold1940
Description:

Target: scaffold1940; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 99 - 351
Target Start/End: Original strand, 545 - 794
Alignment:
Q  99 taagaccatatataatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggt 198  Q
    |||||||||  | ||||||| ||| || ||||||||| ||||||||||||| ||||||| | ||||| || | |||||||||||| ||||||||||||||    
T  545 taagaccatccacaatggtgaatgcttcacctatttaacaccacattaaataggcacccccattgtggagaataatatatgggtggctatggagaagggt 644  T
Q  199 ggttatggaatcaccctctctcttcattttttgttggtcctatttaataaattaaata-aattttgttgaaatgtaatgatatagaattatttgtaggac 297  Q
    || ||||||| ||||  ||||||||||||||  ||  |     ||||||||  ||||| ||| ||||| ||||||||||||||| |||||||||| ||||    
T  645 ggctatggaagcacc--ctctcttcatttttctttaataaatcttaataaa--aaatataatgttgttaaaatgtaatgatataaaattatttgtgggac 740  T
Q  298 ctatttaataatttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
    ||||||||||||||||||| | ||| | | |||||||||| |||| ||||||||    
T  741 ctatttaataatttattttgaggtgctaggttggagaaaaatggtgcttattaa 794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 242 - 351
Target Start/End: Complemental strand, 60976 - 60867
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattgg 341  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||  |||| | ||| ||| |||||||||||||     
T  60976 ttaataaaataaataaattttgttgaaatgtaatgatataaaattatttgtgggccctatttaataattccttttaaggtgctgggttggagaaaattga 60877  T
Q  342 tacttattaa 351  Q
    | ||||||||    
T  60876 tgcttattaa 60867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 242 - 351
Target Start/End: Complemental strand, 323 - 214
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattgg 341  Q
    |||||||| |||| ||||||||||||||||| || ||||||||||||||||||||| ||||||||||||| |||| ||||  ||  ||||||||||| ||    
T  323 ttaataaaataaagaaattttgttgaaatgttattatatagaattatttgtaggacatatttaataatttcttttaaagtactgtgttggagaaaatcgg 224  T
Q  342 tacttattaa 351  Q
    | ||||||||    
T  223 tgcttattaa 214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 242 - 351
Target Start/End: Complemental strand, 2725 - 2616
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattgg 341  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||| || | |  ||||||||||||||| |||| | ||| |||||||||||||||||     
T  2725 ttaataaaataaataaattttgttgaaatgtaatgatataaaattagttatggaccctatttaataatttcttttaaggtgctggattggagaaaattga 2626  T
Q  342 tacttattaa 351  Q
    | ||||||||    
T  2625 tgcttattaa 2616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 428281 - 428400
Alignment:
Q  99 taagaccatatataatggtggatgattaacctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatggagaagggt 198  Q
    |||||||||  | |||||||| || || ||||||||||||||| ||||||| ||||||| | ||||| |||| |||| ||||||| ||||||||||||||    
T  428281 taagaccatccacaatggtgggtgcttcacctatttagcaccagattaaataggcaccc-cattgtggagtataatacatgggtggctatggagaagggt 428379  T
Q  199 ggttatggaatcaccctctct 219  Q
    || ||||||| ||||||||||    
T  428380 ggctatggaagcaccctctct 428400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 251 - 281
Target Start/End: Original strand, 428448 - 428478
Alignment:
Q  251 taaataaattttgttgaaatgtaatgatata 281  Q
    |||||||||||||||||||||||||||||||    
T  428448 taaataaattttgttgaaatgtaatgatata 428478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 242 - 340
Target Start/End: Complemental strand, 94279 - 94182
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattg 340  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||  |||||||||| || ||||   ||||||||||| |||||||||    
T  94279 ttaataaaataaataaattttgttgaaatgtaatgatataaaattatttgtatgatatatttaataa-ttcttttgtggtgttggattgtagaaaattg 94182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 101680 - 101626
Alignment:
Q  167 agtaaaatatatgggtgcctatggagaagggtggttatggaatcaccctctctct 221  Q
    |||| |||||||||||| |||||||||||||||| ||||||| ||||||||||||    
T  101680 agtataatatatgggtggctatggagaagggtggctatggaagcaccctctctct 101626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 242 - 351
Target Start/End: Complemental strand, 178326 - 178217
Alignment:
Q  242 ttaataaattaaataaattttgttgaaatgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattgg 341  Q
    |||||||| |||||||||||| |||||||||||||||| | ||||| ||||  | ||||||||||||||| |||| | ||  |||||||||||||||||     
T  178326 ttaataaaataaataaattttattgaaatgtaatgatacaaaattagttgtgtgccctatttaataatttcttttaaggtactggattggagaaaattga 178227  T
Q  342 tacttattaa 351  Q
    | ||||||||    
T  178226 tgcttattaa 178217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 253 - 351
Target Start/End: Original strand, 22871 - 22970
Alignment:
Q  253 aataaattttgttgaaa-tgtaatgatatagaattatttgtaggacctatttaataatttattttcaagtgttggattggagaaaattggtacttattaa 351  Q
    ||||||||||||| ||| |||||||||||| ||||||| || |||||||||||||||||| |||||| ||| |   ||||||||||||||| ||||||||    
T  22871 aataaattttgttaaaaatgtaatgatataaaattattggtgggacctatttaataatttcttttcaggtgctatgttggagaaaattggtgcttattaa 22970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 71762 - 71668
Alignment:
Q  127 acctatttagcaccacattaaattggcaccctcgttgtgaagtaaaatatatgggtgcctatg-gagaagggtggttatggaatcaccctctctc 220  Q
    ||||||||||||||| | ||||| ||||||| | || || |||| ||||| |||||||||||| || ||  |||||||||||| |||||||||||    
T  71762 acctatttagcaccatactaaataggcacccacattatggagtataatatttgggtgcctatgagaaaaaagtggttatggaagcaccctctctc 71668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 4462 - 4405
Alignment:
Q  297 cctatttaataatttattttcaagtgttggattggagaaaattggtacttattaaata 354  Q
    |||| ||||||| || |||| ||||||||| ||||||||||||||| |||||||||||    
T  4462 cctagttaataaattcttttgaagtgttgggttggagaaaattggtgcttattaaata 4405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University