View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14633_high_10 (Length: 250)
Name: NF14633_high_10
Description: NF14633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14633_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 46032386 - 46032566
Alignment:
| Q |
1 |
catcacgcagttcaatttgaagtggtacatctccctcagctttgatggtggacttggtgaaaattctgtttggcaatttgttcatgaaacagaattgcaa |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46032386 |
catcacgcagttcaatttgaagtggttcatctccctcagctttgatggtggacttagtgaaaattctgtttggcaatttgttcatgaaacagaattgcaa |
46032485 |
T |
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| Q |
101 |
acgtctccttccaaatgtgttggacataagcgtcaatccacaactaaattccaaacaaaaacaagtatgaatataattaat |
181 |
Q |
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| T |
46032486 |
acgtctccttccaaatgtgttggacataagcgtcaatccacaactaaattccaaacaaaaacaagtatgaatataattaat |
46032566 |
T |
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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 46019714 - 46019910
Alignment:
| Q |
1 |
catcacgcagttcaatttgaagtggtacatctccctcagctttgatggtggacttggtgaaaattctgtttggcaatttgttcatgaaacagaattgcaa |
100 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||||||| |||| | ||||||||| | | |||| ||||||||||||||| |||||||| |
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| T |
46019714 |
catcacgcagttcaatttgaagcggttcatctccctcagctttgatttcggacattgtgaaaattgtttcaggcattttgttcatgaaacacaattgcaa |
46019813 |
T |
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| Q |
101 |
acgtctccttc---caaatgtgttggaca------taagcgtcaatccacaactaaattccaaacaaaaacaagtatgaatataattaattttgctt |
188 |
Q |
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| T |
46019814 |
acgtctcctcctctcatatgtgttggccaactcgttaagggtcaatccacagctaaattagaaacacaaacaactatcaatacaattgattttgctt |
46019910 |
T |
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