View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14633_high_2 (Length: 573)
Name: NF14633_high_2
Description: NF14633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14633_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 219 - 569
Target Start/End: Original strand, 34253382 - 34253729
Alignment:
| Q |
219 |
aaagagtggtgagcgtatcatcgagttctaggagaattccttaattgatgattcttcttctatgtttagtcaagagactagtctagccctgttatgcagt |
318 |
Q |
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| T |
34253382 |
aaagagtggtgagcgtatcatcgagttctagaagaattccttaattgatgattcttcttctatgtttagtcaagagactagtctagccctgttatgcagt |
34253481 |
T |
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| Q |
319 |
cctatgcttttagaactagttttagtcttattataaaggatattaggaatagtgttgaaactctattatgtaatgtgtagtttgcaatgacgagttattt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34253482 |
cctatgcttttagaactagttttagtcttattataaaggatattaggaatagtgttgaaactctattatgtaatgtgtagtttgcaatgacgagttattt |
34253581 |
T |
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| Q |
419 |
ctcgttttctgtaatgacgagagttatttaaatcatgattcaaccatgattttattggacttaccgtgattccaaacatgcaagagatagagttataata |
518 |
Q |
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| T |
34253582 |
ctcgttttctgtaatgac--gagttatttaaatcatgattcaaccatgattttattggacttaccgtgattccaaacatgcaagagat-gagttataata |
34253678 |
T |
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| Q |
519 |
agaaaaccaactataatgtcctttgtgtatactaatgcttaactatctctg |
569 |
Q |
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| T |
34253679 |
agaaaaccaactataatgacctttgtgtatactaatgcttaactttctctg |
34253729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 34253286 - 34253377
Alignment:
| Q |
28 |
gaatccacaaatttcctggctccgtccactgtctgcaactgtggacatacaaatactgcaaccgcggtactagactttgtacaaaaacaccgta |
121 |
Q |
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| T |
34253286 |
gaatccacaaatttcctggctccg-ccactatctgcaactgtg-acatacaaatactgcaagcgcggtactagactttgtacaaaaacaccgta |
34253377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 121 - 223
Target Start/End: Original strand, 34241961 - 34242062
Alignment:
| Q |
121 |
aatttaaaatt-acattacatggtctttgaccgcagaatcggtccactattactcaaccatgtgattcgaggagagcagcacgattccaataccaaataa |
219 |
Q |
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||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| || |||||| | |||| ||||||||||||| |
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| T |
34241961 |
aatttaaaatttacatttcatggtctttggccgcaaaatcggtccactattactcaaccatgtgattctag--gagcaggatgatttcaataccaaataa |
34242058 |
T |
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| Q |
220 |
aaga |
223 |
Q |
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|||| |
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| T |
34242059 |
aaga |
34242062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 562
Target Start/End: Original strand, 34243662 - 34243779
Alignment:
| Q |
443 |
tatttaaatcatgattcaaccatgattttattggacttaccgtgattccaaacatgcaagagatagagttataataagaaaaccaactataatgtccttt |
542 |
Q |
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|||| |||||||||||| |||||||| | |||||| |||| |||||||||||||||||| || ||||| || |||||||| ||| |||| | || || |
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| T |
34243662 |
tattcaaatcatgattccgccatgattgtgttggacctaccatgattccaaacatgcaagcaat-gagttctactaagaaaa-caaatatagcgaccctt |
34243759 |
T |
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| Q |
543 |
gtgtatactaatgcttaact |
562 |
Q |
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|||||||| ||||||||||| |
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| T |
34243760 |
gtgtatacaaatgcttaact |
34243779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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