View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14633_high_9 (Length: 271)
Name: NF14633_high_9
Description: NF14633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14633_high_9 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 271
Target Start/End: Original strand, 496743 - 497007
Alignment:
| Q |
6 |
aatgaagaccaaagttacactaagaatgtaagttttttacttttggattaattatagtataagaacaatcaattttttactaagataacttatatataaa |
105 |
Q |
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| T |
496743 |
aatgaagaccaaagttacactaagaatgtaagttttttacttttggattaactatagtataagaacaatcaattttttactaagataacttatatataaa |
496842 |
T |
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| Q |
106 |
tgctcttacagactaaagagataaatataaaatctggtttgaattattatgataaatacacacatatttgatgttgtgtttttgtatctttacatcttaa |
205 |
Q |
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| T |
496843 |
agctcttacagactaaagagataaatataaaatctggtttgaattattatgataaatacacacatatttgatgttgtgtttttgtatc-ttacatcttaa |
496941 |
T |
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| Q |
206 |
atctagaacatgtatgatttggatattttccaatcggtttacactactttgtggtaaaacacaact |
271 |
Q |
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| T |
496942 |
atctagaacatgtatgatttggatattttccaatcggtttacactactttgtggtaaaacataact |
497007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 500655 - 500707
Alignment:
| Q |
46 |
ttttggattaattatagtataagaacaatcaa--ttttttactaagataactt |
96 |
Q |
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| T |
500655 |
ttttggattagctaaagtataagaacaatcaattttttttactaagataactt |
500707 |
T |
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