View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14633_low_10 (Length: 279)

Name: NF14633_low_10
Description: NF14633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14633_low_10
NF14633_low_10
[»] chr2 (23 HSPs)
chr2 (11-260)||(19657760-19658008)
chr2 (53-260)||(43640694-43640900)
chr2 (24-260)||(6092754-6092991)
chr2 (14-260)||(19435557-19435804)
chr2 (18-260)||(29112070-29112314)
chr2 (18-260)||(18533640-18533886)
chr2 (41-260)||(23614210-23614429)
chr2 (68-258)||(24839717-24839909)
chr2 (68-145)||(20271260-20271338)
chr2 (19-56)||(19670987-19671024)
chr2 (18-56)||(22581838-22581876)
chr2 (18-56)||(23823331-23823369)
chr2 (18-56)||(23825275-23825313)
chr2 (18-55)||(5104-5141)
chr2 (190-247)||(22575407-22575464)
chr2 (12-57)||(24966401-24966446)
chr2 (19-56)||(28972255-28972292)
chr2 (12-56)||(3801286-3801330)
chr2 (12-56)||(12643980-12644024)
chr2 (12-56)||(19888900-19888944)
chr2 (12-56)||(21140115-21140159)
chr2 (12-56)||(34822291-34822335)
chr2 (12-56)||(42180382-42180426)
[»] chr7 (26 HSPs)
chr7 (19-260)||(4482575-4482817)
chr7 (11-260)||(14278521-14278772)
chr7 (14-260)||(28718328-28718575)
chr7 (12-240)||(21677162-21677390)
chr7 (127-260)||(44307297-44307430)
chr7 (41-260)||(39293768-39293992)
chr7 (41-260)||(4072617-4072838)
chr7 (69-259)||(15980155-15980348)
chr7 (62-260)||(12246029-12246228)
chr7 (67-248)||(14302493-14302676)
chr7 (188-259)||(8565648-8565720)
chr7 (191-260)||(19381430-19381500)
chr7 (11-56)||(13868060-13868105)
chr7 (18-60)||(5617758-5617801)
chr7 (202-260)||(19065726-19065785)
chr7 (18-56)||(12249923-12249961)
chr7 (18-56)||(16572033-16572071)
chr7 (18-56)||(16593591-16593629)
chr7 (18-56)||(49049703-49049741)
chr7 (11-56)||(7286502-7286547)
chr7 (11-56)||(11285323-11285368)
chr7 (11-56)||(18305811-18305856)
chr7 (12-56)||(7290884-7290928)
chr7 (12-56)||(14253243-14253287)
chr7 (12-56)||(16416485-16416529)
chr7 (12-56)||(16481009-16481053)
[»] chr8 (35 HSPs)
chr8 (41-260)||(19333653-19333872)
chr8 (11-258)||(17264805-17265053)
chr8 (53-260)||(45561318-45561525)
chr8 (11-260)||(25293829-25294079)
chr8 (11-260)||(25755818-25756068)
chr8 (127-260)||(20178058-20178191)
chr8 (127-260)||(20222785-20222918)
chr8 (41-248)||(11600380-11600589)
chr8 (11-159)||(23216951-23217100)
chr8 (109-260)||(22311515-22311667)
chr8 (41-260)||(24237347-24237571)
chr8 (14-167)||(22319919-22320074)
chr8 (41-177)||(23879283-23879420)
chr8 (41-163)||(25608237-25608359)
chr8 (98-189)||(11542333-11542424)
chr8 (182-260)||(23217099-23217178)
chr8 (11-58)||(31196426-31196473)
chr8 (11-56)||(645950-645995)
chr8 (18-60)||(15931626-15931669)
chr8 (18-57)||(23229128-23229167)
chr8 (11-56)||(831685-831730)
chr8 (18-56)||(17731367-17731405)
chr8 (11-90)||(22311349-22311431)
chr8 (11-56)||(23509043-23509088)
chr8 (11-56)||(41509102-41509147)
chr8 (12-56)||(3433698-3433742)
chr8 (12-56)||(6776402-6776446)
chr8 (12-56)||(13664723-13664767)
chr8 (12-56)||(13723998-13724042)
chr8 (12-56)||(17343456-17343500)
chr8 (12-56)||(18610404-18610448)
chr8 (12-56)||(22909515-22909559)
chr8 (55-134)||(23350495-23350575)
chr8 (12-56)||(24108637-24108681)
chr8 (12-56)||(28835956-28836000)
[»] chr5 (26 HSPs)
chr5 (11-260)||(11963902-11964152)
chr5 (41-260)||(14345285-14345504)
chr5 (11-260)||(5452927-5453176)
chr5 (53-260)||(24227558-24227766)
chr5 (98-260)||(3671842-3672003)
chr5 (41-260)||(20456189-20456412)
chr5 (68-242)||(11765391-11765566)
chr5 (97-241)||(16837414-16837558)
chr5 (11-56)||(23492211-23492256)
chr5 (11-56)||(34937546-34937591)
chr5 (18-56)||(11338782-11338820)
chr5 (18-56)||(23986339-23986377)
chr5 (11-56)||(28888190-28888236)
chr5 (11-56)||(25944730-25944775)
chr5 (12-56)||(10283-10327)
chr5 (12-56)||(1221806-1221850)
chr5 (11-90)||(3671724-3671804)
chr5 (12-56)||(9732762-9732806)
chr5 (12-56)||(10780285-10780329)
chr5 (12-56)||(11340575-11340619)
chr5 (12-56)||(18780215-18780259)
chr5 (12-56)||(22885214-22885258)
chr5 (12-56)||(25211962-25212006)
chr5 (12-56)||(25276114-25276158)
chr5 (12-56)||(35793325-35793369)
chr5 (12-56)||(43445881-43445925)
[»] chr3 (31 HSPs)
chr3 (18-260)||(8602584-8602826)
chr3 (11-245)||(17760445-17760680)
chr3 (11-245)||(19061765-19062000)
chr3 (11-260)||(12950868-12951118)
chr3 (14-260)||(38813033-38813279)
chr3 (18-248)||(15988834-15989066)
chr3 (41-260)||(25105973-25106193)
chr3 (22-260)||(31414272-31414511)
chr3 (11-260)||(15551522-15551773)
chr3 (98-260)||(5230214-5230378)
chr3 (18-241)||(37918552-37918779)
chr3 (41-260)||(38377913-38378128)
chr3 (41-260)||(17391309-17391531)
chr3 (41-189)||(14182099-14182248)
chr3 (14-152)||(6817369-6817507)
chr3 (110-260)||(11400574-11400726)
chr3 (51-145)||(8022167-8022261)
chr3 (11-56)||(12490652-12490697)
chr3 (11-56)||(17936430-17936475)
chr3 (41-106)||(40041355-40041422)
chr3 (11-56)||(7851658-7851703)
chr3 (11-56)||(11381057-11381102)
chr3 (18-56)||(11063000-11063038)
chr3 (18-56)||(11199395-11199433)
chr3 (18-56)||(15548810-15548848)
chr3 (18-56)||(17137681-17137719)
chr3 (18-56)||(39654145-39654183)
chr3 (12-56)||(11812777-11812821)
chr3 (12-56)||(16819019-16819063)
chr3 (12-56)||(18908655-18908699)
chr3 (12-56)||(22273010-22273054)
[»] scaffold0090 (2 HSPs)
scaffold0090 (53-260)||(6759-6966)
scaffold0090 (20-260)||(36817-37058)
[»] chr1 (13 HSPs)
chr1 (41-260)||(78138-78358)
chr1 (18-246)||(20192032-20192261)
chr1 (18-260)||(33395168-33395403)
chr1 (61-260)||(20820769-20820971)
chr1 (12-51)||(24498425-24498464)
chr1 (18-56)||(20956866-20956904)
chr1 (18-56)||(22837240-22837278)
chr1 (18-56)||(22837443-22837481)
chr1 (18-56)||(51658235-51658273)
chr1 (11-56)||(20252317-20252362)
chr1 (11-56)||(22080165-22080210)
chr1 (12-56)||(15863488-15863532)
chr1 (20-56)||(36358154-36358190)
[»] chr6 (19 HSPs)
chr6 (22-258)||(29162539-29162776)
chr6 (41-248)||(21929771-21929979)
chr6 (41-260)||(23219634-23219857)
chr6 (41-260)||(16131591-16131814)
chr6 (98-260)||(15294480-15294644)
chr6 (68-260)||(4229967-4230161)
chr6 (68-260)||(31162949-31163136)
chr6 (68-229)||(4174370-4174532)
chr6 (61-260)||(16374325-16374529)
chr6 (11-56)||(35011296-35011341)
chr6 (11-56)||(35017625-35017670)
chr6 (230-260)||(7829624-7829654)
chr6 (18-56)||(16889637-16889675)
chr6 (11-56)||(18397139-18397183)
chr6 (11-56)||(18578809-18578854)
chr6 (12-56)||(16235744-16235788)
chr6 (12-56)||(18843880-18843924)
chr6 (12-56)||(19627474-19627518)
chr6 (12-56)||(23975684-23975728)
[»] chr4 (22 HSPs)
chr4 (11-260)||(15115925-15116173)
chr4 (11-241)||(15215885-15216117)
chr4 (41-238)||(5372768-5372967)
chr4 (18-240)||(54365726-54365952)
chr4 (98-260)||(41918807-41918970)
chr4 (112-258)||(12135875-12136022)
chr4 (182-260)||(40902761-40902839)
chr4 (112-241)||(17377894-17378025)
chr4 (51-260)||(9650183-9650395)
chr4 (11-56)||(43283273-43283318)
chr4 (18-56)||(13811538-13811576)
chr4 (18-59)||(42707007-42707049)
chr4 (12-49)||(16520777-16520814)
chr4 (52-145)||(21958097-21958190)
chr4 (12-56)||(8372583-8372627)
chr4 (8-56)||(15211487-15211535)
chr4 (12-56)||(15274643-15274687)
chr4 (12-56)||(17150228-17150272)
chr4 (12-56)||(18246154-18246198)
chr4 (12-56)||(19998493-19998537)
chr4 (12-56)||(22356596-22356640)
chr4 (12-56)||(26678155-26678199)
[»] scaffold0216 (1 HSPs)
scaffold0216 (18-258)||(22762-23007)
[»] scaffold0231 (1 HSPs)
scaffold0231 (41-260)||(14967-15189)
[»] scaffold0009 (2 HSPs)
scaffold0009 (41-260)||(256421-256643)
scaffold0009 (11-56)||(270304-270349)
[»] scaffold0601 (1 HSPs)
scaffold0601 (41-260)||(3074-3297)
[»] scaffold0115 (1 HSPs)
scaffold0115 (41-260)||(19645-19867)
[»] scaffold0017 (2 HSPs)
scaffold0017 (137-260)||(10648-10771)
scaffold0017 (11-90)||(10565-10645)
[»] scaffold0032 (2 HSPs)
scaffold0032 (94-259)||(121600-121767)
scaffold0032 (20-60)||(106442-106482)
[»] scaffold0468 (1 HSPs)
scaffold0468 (41-260)||(13013-13234)
[»] scaffold0183 (1 HSPs)
scaffold0183 (98-260)||(8781-8945)
[»] scaffold0174 (1 HSPs)
scaffold0174 (68-260)||(22200-22395)
[»] scaffold0013 (1 HSPs)
scaffold0013 (83-184)||(16582-16683)
[»] scaffold1923 (1 HSPs)
scaffold1923 (53-260)||(723-933)
[»] scaffold0049 (1 HSPs)
scaffold0049 (11-56)||(30625-30670)
[»] scaffold0317 (1 HSPs)
scaffold0317 (190-260)||(15854-15925)
[»] scaffold0191 (1 HSPs)
scaffold0191 (11-56)||(663-708)
[»] scaffold0028 (1 HSPs)
scaffold0028 (11-56)||(90998-91043)
[»] scaffold0010 (1 HSPs)
scaffold0010 (18-60)||(29406-29449)
[»] scaffold0589 (1 HSPs)
scaffold0589 (18-56)||(6084-6122)
[»] scaffold0396 (1 HSPs)
scaffold0396 (18-56)||(14134-14172)
[»] scaffold0116 (1 HSPs)
scaffold0116 (14-56)||(27928-27970)
[»] scaffold0047 (1 HSPs)
scaffold0047 (18-59)||(1948-1990)
[»] scaffold0031 (1 HSPs)
scaffold0031 (18-56)||(68576-68614)
[»] scaffold0023 (2 HSPs)
scaffold0023 (18-56)||(92234-92272)
scaffold0023 (11-56)||(86129-86174)
[»] scaffold0503 (1 HSPs)
scaffold0503 (18-55)||(9666-9703)
[»] scaffold0447 (1 HSPs)
scaffold0447 (11-56)||(2450-2495)
[»] scaffold0383 (1 HSPs)
scaffold0383 (11-56)||(5314-5359)
[»] scaffold0292 (1 HSPs)
scaffold0292 (11-56)||(17710-17755)
[»] scaffold0269 (2 HSPs)
scaffold0269 (11-56)||(3031-3075)
scaffold0269 (12-56)||(257-301)
[»] scaffold0171 (1 HSPs)
scaffold0171 (11-56)||(31013-31058)
[»] scaffold0158 (2 HSPs)
scaffold0158 (11-56)||(16351-16396)
scaffold0158 (11-56)||(23015-23060)
[»] scaffold0051 (1 HSPs)
scaffold0051 (11-56)||(56181-56226)
[»] scaffold0034 (1 HSPs)
scaffold0034 (11-56)||(77573-77618)
[»] scaffold0622 (1 HSPs)
scaffold0622 (11-47)||(7420-7456)
[»] scaffold0597 (1 HSPs)
scaffold0597 (12-56)||(3063-3107)
[»] scaffold0529 (1 HSPs)
scaffold0529 (12-56)||(780-824)
[»] scaffold0342 (1 HSPs)
scaffold0342 (12-56)||(2638-2682)
[»] scaffold0338 (1 HSPs)
scaffold0338 (24-56)||(6969-7001)
[»] scaffold0253 (1 HSPs)
scaffold0253 (12-56)||(14825-14869)
[»] scaffold0226 (1 HSPs)
scaffold0226 (12-56)||(15219-15263)
[»] scaffold0039 (1 HSPs)
scaffold0039 (11-51)||(21329-21369)
[»] scaffold0003 (1 HSPs)
scaffold0003 (12-56)||(5197-5241)


Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 19657760 - 19658008
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatc 110  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||| |||    
T  19657760 cacagatccactgggggtaagcattacatcatcataatccacataaacagacataggcattcaaggattcatgcataacaattatacataaccatctatc 19657859  T
Q  111 ctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaag 210  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  19657860 ctagaatactagcaacacatgattattat-ccccaacacatacatttcaagctatcaaattactaacataacatagcaacatattcaatcattaaccaag 19657958  T
Q  211 tcatcgacataagttcatcattcatcaacaacaatcaagaaaggattact 260  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19657959 tcatcgacataagttcatcattcatcaacaacaatgaagaaaggattact 19658008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 53 - 260
Target Start/End: Original strand, 43640694 - 43640900
Alignment:
Q  53 ataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatcccccaacacata 152  Q
    ||||||| |||||| |||||||||||||||||||| || | |||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||    
T  43640694 ataaacaaacataggcattcaaggattcatgcatagcacatatacataaccatccctccta-aatactagcatcacatgattattatcccccatcacata 43640792  T
Q  153 catttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaagtcatcgacataagttcatcattcatcaacaacaatcaagaaa 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  43640793 catttcaagctatcaaattactaacatagcatagcaacatattcaatcactaatcaagtcatcgacataagctcatcattcatcaacaacaatcaagaaa 43640892  T
Q  253 ggattact 260  Q
    ||||||||    
T  43640893 ggattact 43640900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 24 - 260
Target Start/End: Original strand, 6092754 - 6092991
Alignment:
Q  24 ggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatcctagaatactag 122  Q
    ||||||||| |||| ||| |||||||| ||||||||| ||| || ||||||||||||||||||||||| | |||||||||||||| ||||| ||||||||    
T  6092754 ggggtaagctttacatcaatcataatcaacataaacaaacacaggcattcaaggattcatgcataacacatatacataaccatccctcctataatactag 6092853  T
Q  123 catcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaagtcatcgacataa 222  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| ||||||||||||    
T  6092854 catcacatgattattatcccccatcacatacatttcaagctatcaaattactgacgtagcatagcaacatattcaatcactaatcaaatcatcgacataa 6092953  T
Q  223 gttcatcattcatcaacaacaatcaagaaaggattact 260  Q
    | ||||||| ||||||||||||||||||||||||||||    
T  6092954 gctcatcatccatcaacaacaatcaagaaaggattact 6092991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 19435804 - 19435557
Alignment:
Q  14 agatccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatcct 112  Q
    ||||||| |||||||||| ||||| | | |||||||| ||| ||||| | |||  ||||||||||||||||||||||| | ||||||||||| |  ||||    
T  19435804 agatccattgggggtaagtattacataaatcataatcaacaaaaacaaatataagcattcaaggattcatgcataacacatatacataaccacctctcct 19435705  T
Q  113 agaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaagtc 212  Q
    |||||||||||||||||||||| |||||||||| || | ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  19435704 agaatactagcatcacatgattgttatcccccatcataaacatttcaagctatcaaattactaacatagcatagaaacatattcaatcactaatcaagtc 19435605  T
Q  213 atcgacataagttcatcattcatcaacaacaatcaagaaaggattact 260  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||    
T  19435604 atcgacataagctcataattcatcaacaacaatcaagaaaggattact 19435557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 29112070 - 29112314
Alignment:
Q  18 ccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatcctagaa 116  Q
    ||||||||||||||| | || ||| ||| |||| ||||||||| |||||||||||||| ||||||||||||||| | |||||||||||||| ||||||||    
T  29112070 ccactgggggtaagcttcacatcaatcacaatcaacataaacaaacatagacattcaacgattcatgcataacacatatacataaccatccctcctagaa 29112169  T
Q  117 tactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaagtcatcg 216  Q
    ||||||||||||||||||||||||||||| || |||||  |||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||    
T  29112170 tactagcatcacatgattattatcccccatcatatacaactcaagctatcaaattactaacataacatagcaacatattcaatccctaatcaagtcatcg 29112269  T
Q  217 acataagttcatcattcatcaacaacaatcaa-gaaaggattact 260  Q
    ||||||| |||||||| || |||| ||||||| |||| |||||||    
T  29112270 acataagctcatcatttattaacatcaatcaatgaaaagattact 29112314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 18533640 - 18533886
Alignment:
Q  18 ccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatccatcctaga 115  Q
    ||||||||||||||| | || ||| |||||||| |||||| || |||||  |||||||||||| ||||||||||| | ||||||| |||||| |||||||    
T  18533640 ccactgggggtaagcttcacatcaatcataatcaacataatcaaacataagcattcaaggatttcatgcataacacatatacatacccatccctcctaga 18533739  T
Q  116 atactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattcaatcactaaccaagtcat 214  Q
    |||||| |||||||||||||||||||||||   ||| ||  ||||||||||| ||||||||||||||||||||| ||||||||||| |||| | ||||||    
T  18533740 atactaacatcacatgattattatcccccattccatgcacctcaagctatcacattactaacatagcatagcaagcatattcaatctctaaacgagtcat 18533839  T
Q  215 cgacataagttcatcattcatcaacaacaatcaa-gaaaggattact 260  Q
    ||||||||| || ||||| ||||||| ||||||| ||||||||||||    
T  18533840 cgacataagctcgtcatttatcaacatcaatcaatgaaaggattact 18533886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 23614429 - 23614210
Alignment:
Q  41 atcataatccacataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattatt-a 138  Q
    ||||||||| ||||||||| | |||  |||||||||||| |||||||||||  ||||| ||||||||| ||||||| ||||||||||| ||||||||| |    
T  23614429 atcataatcaacataaacaaatataagcattcaaggatttcatgcataaca--catacctaaccatccctcctaga-tactagcatcagatgattattta 23614333  T
Q  139 tcccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacataagttcatcattcatca 237  Q
    |||||||   ||||||  ||||||||||| ||||||||||||||||||||| ||||||||||| |||| ||||||||| ||||| | ||||| || ||||    
T  23614332 tcccccattccatacacctcaagctatcacattactaacatagcatagcaagcatattcaatctctaaacaagtcatcaacataggctcatcgtt-atca 23614234  T
Q  238 acaacaatcaa-gaaaggattact 260  Q
    ||| ||||||| ||||||||||||    
T  23614233 acatcaatcaatgaaaggattact 23614210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 258
Target Start/End: Original strand, 24839717 - 24839909
Alignment:
Q  68 cattcaaggattcatgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatca 167  Q
    ||||||||||||||| ||||  | | ||| ||| |||||| ||| ||||||||| |||||||| ||||||||||||||   | ||||  |||||||||||    
T  24839717 cattcaaggattcatacatattacatataaatacccatccttcccagaatactaacatcacataattattatcccccattccttacacctcaagctatca 24839816  T
Q  168 aattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacataagttcatcattcatcaacaacaatcaa-gaaaggatta 258  Q
     ||||||||||||||||||||| |||||| |||| |||| |||||| || |||  || |||||||| || |||| ||||||| ||||||||||    
T  24839817 cattactaacatagcatagcaagcatatttaatctctaatcaagtcctcaacaagagctcatcatttattaacatcaatcaatgaaaggatta 24839909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 20271260 - 20271338
Alignment:
Q  68 cattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatccccca 145  Q
    |||||||||||| ||||||| | | | ||||||| |||||| ||||||| ||||| |||||||||||||||||||||||    
T  20271260 cattcaaggatttcatgcatgatacatatacatacccatccctcctagagtactaacatcacatgattattatccccca 20271338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 19671024 - 19670987
Alignment:
Q  19 cactgggggtaagcattacgtcatcataatccacataa 56  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  19671024 cactgggggtaagcattacatcatcataatccacataa 19670987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 22581876 - 22581838
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  22581876 ccactgggggtaagtattacatcatcataatccacataa 22581838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 23823369 - 23823331
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  23823369 ccactgggggtaagtattacatcatcataatccacataa 23823331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 23825313 - 23825275
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  23825313 ccactgggggtaagtattacatcatcataatccacataa 23825275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 5141 - 5104
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacata 55  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  5141 ccactgggggtaagtattacatcatcataatccacata 5104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 22575407 - 22575464
Alignment:
Q  190 catattcaatcactaaccaagtcatcgacataagttcatcattcatcaacaacaatca 247  Q
    ||||||||||| |||| ||||||||| |||||||||||||| | | ||||| ||||||    
T  22575407 catattcaatctctaatcaagtcatcaacataagttcatcacttaacaacatcaatca 22575464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 24966401 - 24966446
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataaa 57  Q
    ||||||||||| |||||||| ||||| ||||||||||||| |||||    
T  24966401 acagatccactaggggtaagtattacatcatcataatccaaataaa 24966446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 28972255 - 28972292
Alignment:
Q  19 cactgggggtaagcattacgtcatcataatccacataa 56  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  28972255 cactgggggtaagtattacatcatcataatccacataa 28972292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 3801330 - 3801286
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  3801330 acagatccactgggggtaagtattacattatcataatccaaataa 3801286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 12644024 - 12643980
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  12644024 acagatccactgggggtaagtattacattatcataatccaaataa 12643980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 19888944 - 19888900
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  19888944 acagatccactgggggtaagtattacattatcataatccaaataa 19888900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 21140115 - 21140159
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  21140115 acagatccactgggggtaagtattacattatcataatccaaataa 21140159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 34822291 - 34822335
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  34822291 acagatccactgggggtaagtattacattatcataatccaaataa 34822335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 42180426 - 42180382
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| ||| ||||||||| ||||    
T  42180426 acagatccactgggggtaagtattacatcaacataatccaaataa 42180382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 4482575 - 4482817
Alignment:
Q  19 cactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatcctagaat 117  Q
    |||||||||||||| |||| ||| |||||||| ||||||||| |||||| |||||||||||||||||||| || | |||||||||||||| |||||||||    
T  4482575 cactgggggtaagctttacatcaatcataatcaacataaacaaacataggcattcaaggattcatgcatagcacatatacataaccatccctcctagaat 4482674  T
Q  118 actagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaagtcatcga 217  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4482675 actagcatcacatgattattatcccccagcacatacatttcaagctgtcaaattactaacatagtatagcaacatattcaatcactaaccaagtcatcga 4482774  T
Q  218 cataagttcatcattcatcaacaacaatcaagaaaggattact 260  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4482775 cataagttcatcattcatcaacaacaatcaagaaaggattact 4482817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 14278772 - 14278521
Alignment:
Q  11 cacagatccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatcca 108  Q
    |||||||||||| ||||||||| | || ||| |||||||| ||||||||| |||||| |||||||||||| ||||||||||| |  |||||||||||||     
T  14278772 cacagatccactaggggtaagcttcacatcaatcataatcaacataaacaaacataggcattcaaggatttcatgcataacacatttacataaccatccc 14278673  T
Q  109 tcctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaacca 208  Q
    ||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  14278672 tcccagaatactagcatcatatgattattatcccccatcacatacatttcaagctatgaaattactaacatagcatagcaacatattcaatcactaatca 14278573  T
Q  209 agtcatcgacataagttcatcattcatcaacaacaatcaagaaaggattact 260  Q
    |||| |||||||||| ||||||||||||||||||||| ||||||||||||||    
T  14278572 agtcgtcgacataagctcatcattcatcaacaacaattaagaaaggattact 14278521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 14 - 260
Target Start/End: Original strand, 28718328 - 28718575
Alignment:
Q  14 agatccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatcct 112  Q
    ||||||||||||||||||| | || | | |||||||| ||||||||| |||||| |||||||||||||||||||| || | |||||||||||||| | ||    
T  28718328 agatccactgggggtaagcttcacattaatcataatcaacataaacaaacataggcattcaaggattcatgcatagcacatatacataaccatcccttct 28718427  T
Q  113 agaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaagtc 212  Q
    ||||| |||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  28718428 agaattctagcatcacatgattattatccttcatcacatacatttcaagctatcaaattactaacatagcatagcaacatgttcaatcactaatcaagtc 28718527  T
Q  213 atcgacataagttcatcattcatcaacaacaatcaagaaaggattact 260  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||    
T  28718528 atcgacgtaagctcatcattcatcaacaacaatcaagaaaggattact 28718575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 21677390 - 21677162
Alignment:
Q  12 acagatccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatc 110  Q
    ||||||||| ||||||||||| | || ||| |||||||| ||||||| | |||||| |||||||||||||||||||| || | |||||||||||||| ||    
T  21677390 acagatccaatgggggtaagcttcacatcaatcataatcaacataaataaacataggcattcaaggattcatgcatagcacatatacataaccatcc-tc 21677292  T
Q  111 ctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaag 210  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||| |||     
T  21677291 ctagaatactagcatcacatgattattatcccccaccacatacatttcaagctatcaaattactaacacagcataggaacatattcactcactaatcaaa 21677192  T
Q  211 tcatcgacataagttcatcattcatcaaca 240  Q
    |||||||| |||| |||||||| |||||||    
T  21677191 tcatcgacctaagctcatcatttatcaaca 21677162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 127 - 260
Target Start/End: Complemental strand, 44307430 - 44307297
Alignment:
Q  127 acatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaagtcatcgacataagttc 226  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||    
T  44307430 acatgattattatcccccatcacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcattaatcaagtcatcgacataagctc 44307331  T
Q  227 atcattcatcaacaacaatcaagaaaggattact 260  Q
    ||||||||||||||||||||||||||||||||||    
T  44307330 atcattcatcaacaacaatcaagaaaggattact 44307297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 39293992 - 39293768
Alignment:
Q  41 atcataatccacataaacagacatagacatt-caaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattatta 138  Q
    ||||||||| ||||||||| |||||  |||| |||||||| |||| |||||| | |||||||||||||| |||||||||||||||||| |||||||||||    
T  39293992 atcataatcaacataaacaaacataagcatttcaaggatttcatgtataacacatatacataaccatccctcctagaatactagcatcgcatgattatta 39293893  T
Q  139 tcccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacataagttcatcattcatca 237  Q
    ||||||| | ||||||| | ||||||||| ||||||||||||||||||||| ||||||||||| |||| ||||||||| ||||||| |||||||| ||||    
T  39293892 tcccccatctcatacatcttaagctatcacattactaacatagcatagcaagcatattcaatccctaatcaagtcatcaacataagctcatcatttatca 39293793  T
Q  238 acaa-caatcaa-gaaaggattact 260  Q
    ||||  |||||| ||||||||||||    
T  39293792 acaattaatcaatgaaaggattact 39293768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 4072838 - 4072617
Alignment:
Q  41 atcataatccacataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattat 139  Q
    ||||||||| ||||||||| |||||  ||||||||| || ||||||||||| | ||||||| |||||| ||||| ||||||| |||||||||||||||||    
T  4072838 atcataatcaacataaaca-acataagcattcaagggtttcatgcataacacatatacatacccatccctcctaaaatactaacatcacatgattattat 4072740  T
Q  140 cccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacataagttcatcattcatcaa 238  Q
    ||| ||   |||||| |||||||||||| ||||||||||||||||||||| ||||||||||  |||| ||||||||||||||||| |||||||| |||||    
T  4072739 ccctcattccatacacttcaagctatcacattactaacatagcatagcaagcatattcaatttctaatcaagtcatcgacataagctcatcatttatcaa 4072640  T
Q  239 caacaatcaa-gaaaggattact 260  Q
    || ||||||| ||||||||||||    
T  4072639 catcaatcaatgaaaggattact 4072617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 69 - 259
Target Start/End: Complemental strand, 15980348 - 15980155
Alignment:
Q  69 attcaaggat-tcatgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatca 167  Q
    |||||||||| |||||||||||| | ||||||| |||||| |||||||||  || ||| |||||| |||| |||||||   ||||||| |||||||||||    
T  15980348 attcaaggatatcatgcataacacatatacatacccatccctcctagaattttaacattacatgaatattgtcccccattccatacatctcaagctatca 15980249  T
Q  168 aattactaacatagcatagc-aacatattcaatcactaaccaagtcatcgacataagttcatcattcatcaacaacaatc-aagaaaggattac 259  Q
     ||||||||||||||||||| |||||||||||||  ||| |||||||||||| |||| |||||||||||||||||||||| |||||||||||||    
T  15980248 cattactaacatagcatagcaaacatattcaatctttaaacaagtcatcgacctaagctcatcattcatcaacaacaatcaaagaaaggattac 15980155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 62 - 260
Target Start/End: Original strand, 12246029 - 12246228
Alignment:
Q  62 catagacattcaaggat-tcatgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatcccccaacacatacatttcaa 160  Q
    |||| |||||||||||| |||||||||||| | |||||||  ||||| ||||||||||||| |||||||||||||||||||||||   ||||||  ||||    
T  12246029 cataaacattcaaggatctcatgcataacacatatacatacacatccctcctagaatactaacatcacatgattattatcccccattccatacacctcaa 12246128  T
Q  161 gctatcaaattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacataagttcatcattcatcaacaacaatcaa-gaaaggatta 258  Q
    |||||||  ||||||||||  |||||||| ||||||||||| |||| |||||||| |||||| | | |||||| ||||||  ||||||| |||| |||||    
T  12246129 gctatcacgttactaacat--catagcaagcatattcaatctctaatcaagtcattgacataggcttatcatttatcaacgtcaatcaatgaaatgatta 12246226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 67 - 248
Target Start/End: Complemental strand, 14302676 - 14302493
Alignment:
Q  67 acattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatcccccaacacatacatttcaagctat 165  Q
    ||||||||||||| ||||||| ||| | |||||||||||||| || ||||||| || ||||||| || |||| ||| ||||  ||||||  ||| |||||    
T  14302676 acattcaaggatttcatgcatgacacatatacataaccatccctcttagaatattaacatcacacgaatattgtccgccaatccatacacatcatgctat 14302577  T
Q  166 caaattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacataagttcatcattcatcaacaacaatcaa 248  Q
    || | | ||||||| ||||||||| ||||||| ||| |||| |||||||| |||||||| |||||||| ||||||| |||||||    
T  14302576 cacaattctaacatggcatagcaagcatattcgatctctaatcaagtcattgacataaggtcatcatttatcaacatcaatcaa 14302493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 8565720 - 8565648
Alignment:
Q  188 aacatattcaatcactaaccaagtcatcgacataagttcatcattcatcaacaacaatc-aagaaaggattac 259  Q
    ||||||||||||| |||| ||||||||||||||||| |||||||| ||||| | ||||| |||||||||||||    
T  8565720 aacatattcaatctctaatcaagtcatcgacataagctcatcatttatcaatatcaatcaaagaaaggattac 8565648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 19381430 - 19381500
Alignment:
Q  191 atattcaatcactaaccaagtcatcgacataagttcatcattcatcaacaacaatcaa-gaaaggattact 260  Q
    |||||||||| ||||  |||||||||||||||  |||||||| ||||||| ||||||| ||||||||||||    
T  19381430 atattcaatctctaattaagtcatcgacataaactcatcatttatcaacatcaatcaatgaaaggattact 19381500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 13868105 - 13868060
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||| |||||||| ||||| ||||||||||||||||||    
T  13868105 cacagatccactaggggtaagtattacatcatcataatccacataa 13868060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 5617758 - 5617801
Alignment:
Q  18 ccactgggggtaagcattacgtc-atcataatccacataaacag 60  Q
    |||||||||||||||||||| || ||||||||||||||||||||    
T  5617758 ccactgggggtaagcattacatcaatcataatccacataaacag 5617801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 260
Target Start/End: Original strand, 19065726 - 19065785
Alignment:
Q  202 ctaaccaagtcatcgacataagttcatcattcatcaacaacaatcaa-gaaaggattact 260  Q
    |||| |||||||||||| |||| |||||||| ||||||| ||||||| ||||||||||||    
T  19065726 ctaatcaagtcatcgacctaagctcatcatttatcaacatcaatcaatgaaaggattact 19065785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 12249961 - 12249923
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  12249961 ccactgggggtaagtattacatcatcataatccacataa 12249923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 16572071 - 16572033
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  16572071 ccactgggggtaagtattacatcatcataatccacataa 16572033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 16593591 - 16593629
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  16593591 ccactgggggtaagtattacatcatcataatccacataa 16593629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 49049741 - 49049703
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  49049741 ccactgggggtaagtattacatcatcataatccacataa 49049703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 7286547 - 7286502
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||| |||||||| ||||| ||||||||||| ||||||    
T  7286547 cacagatccactaggggtaagtattacatcatcataatcaacataa 7286502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 11285323 - 11285368
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||| |||||||||||||||| ||||| |||| |||||||||||||    
T  11285323 cacaaatccactgggggtaagtattacatcatgataatccacataa 11285368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 18305856 - 18305811
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||| |||||||| ||||| ||||||||||||| ||||    
T  18305856 cacagatccactaggggtaagtattacatcatcataatccaaataa 18305811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 7290884 - 7290928
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  7290884 acagatccactgggggtaagtattacattatcataatccaaataa 7290928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 14253287 - 14253243
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| ||| ||||||||| ||||    
T  14253287 acagatccactgggggtaagtattacatcaacataatccaaataa 14253243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 16416485 - 16416529
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  16416485 acagatccactgggggtaagtattacattatcataatccaaataa 16416529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 16481053 - 16481009
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  16481053 acagatccactgggggtaagtattacattatcataatccaaataa 16481009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 19333872 - 19333653
Alignment:
Q  41 atcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatc 140  Q
    ||||||||| |||||||||  ||||| ||||||||||||||||||||||| | |||||||||||||| ||||| ||| ||||||||||||||||||||||    
T  19333872 atcataatcaacataaacaagcataggcattcaaggattcatgcataacacatatacataaccatccctcctaaaatcctagcatcacatgattattatc 19333773  T
Q  141 ccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaagtcatcgacataagttcatcattcatcaaca 240  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||     
T  19333772 ccccatcacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaatcaagtcatcgacataagctcatcattcatcaacc 19333673  T
Q  241 acaatcaagaaaggattact 260  Q
    ||||||||||||||||||||    
T  19333672 acaatcaagaaaggattact 19333653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 11 - 258
Target Start/End: Original strand, 17264805 - 17265053
Alignment:
Q  11 cacagatccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccat 109  Q
    |||||||||||||| ||||||| | || ||| |||||||| ||||||| | |||||| ||||||||||||||||||||||| | |||||||| || || |    
T  17264805 cacagatccactggaggtaagcttcacatcaatcataatcaacataaataaacataggcattcaaggattcatgcataacacatatacataatcacccct 17264904  T
Q  110 cctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaa 209  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  17264905 cctagaatactagcatcatatgattattatcccccatcacatacattccaagctatcaaaatactaacatagcatagcaacatattcaatcactaatcaa 17265004  T
Q  210 gtcatcgacataagttcatcattcatcaacaacaatcaagaaaggatta 258  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  17265005 gtcatcgacataatctcatcattcatcaacaacaatcaagaaaggatta 17265053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 53 - 260
Target Start/End: Complemental strand, 45561525 - 45561318
Alignment:
Q  53 ataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatcccccaacacata 152  Q
    ||||||| |||||  |||||||||||||||||||| || | |||||||||||||| ||||| ||||||||||||||||||||||||||||||| || |||    
T  45561525 ataaacaaacataagcattcaaggattcatgcatagcacatatacataaccatccctcctaaaatactagcatcacatgattattatcccccatcatata 45561426  T
Q  153 catttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaagtcatcgacataagttcatcattcatcaacaacaatcaagaaa 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  45561425 catttcaagctatcaaattactaacatagcatagcaacatattcaatcactaatcaagtcatcgacataagctcatcattcatcaacaacaatcaagaaa 45561326  T
Q  253 ggattact 260  Q
    ||||||||    
T  45561325 ggattact 45561318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 25293829 - 25294079
Alignment:
Q  11 cacagatccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccat 109  Q
    ||||||||||||||||||||| ||||| ||| |||||||| ||||||||| | |||   |||||||||||||||||||||| | |||||||||||||| |    
T  25293829 cacagatccactgggggtaagtattacatcaatcataatcaacataaacaaatataagtattcaaggattcatgcataacacatatacataaccatccct 25293928  T
Q  110 cctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaa 209  Q
    ||||||||||||||||||||||||| |||||||||| || | |||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||    
T  25293929 cctagaatactagcatcacatgattgttatcccccatcataaacatttcaagctatcaaattaccaacatagcatagcaacatatgcaatcactaatcaa 25294028  T
Q  210 gtcatcgacataagttcatcattcatcaacaacaatcaagaaaggattact 260  Q
     ||||||||| ||  ||||||||||||||||||||||||||||| ||||||    
T  25294029 atcatcgacacaaactcatcattcatcaacaacaatcaagaaagtattact 25294079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 25755818 - 25756068
Alignment:
Q  11 cacagatccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccat 109  Q
    ||||||||||||||||||||| ||||| ||| |||||||| ||||||||| | |||   |||||||||||||||||||||| | |||||||||||||| |    
T  25755818 cacagatccactgggggtaagtattacatcaatcataatcaacataaacaaatataagtattcaaggattcatgcataacacatatacataaccatccct 25755917  T
Q  110 cctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaa 209  Q
    ||||||||||||||||||||||||| |||||||||| || | |||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||    
T  25755918 cctagaatactagcatcacatgattgttatcccccatcataaacatttcaagctatcaaattaccaacatagcatagcaacatatgcaatcactaatcaa 25756017  T
Q  210 gtcatcgacataagttcatcattcatcaacaacaatcaagaaaggattact 260  Q
     ||||||||| ||  ||||||||||||||||||||||||||||| ||||||    
T  25756018 atcatcgacacaaactcatcattcatcaacaacaatcaagaaagtattact 25756068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 127 - 260
Target Start/End: Complemental strand, 20178191 - 20178058
Alignment:
Q  127 acatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaagtcatcgacataagttc 226  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||    
T  20178191 acatgattattatcccccatcacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcattaatcaagtcatcgacataagctc 20178092  T
Q  227 atcattcatcaacaacaatcaagaaaggattact 260  Q
    ||||||||||||||||||||||||||||||||||    
T  20178091 atcattcatcaacaacaatcaagaaaggattact 20178058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 127 - 260
Target Start/End: Complemental strand, 20222918 - 20222785
Alignment:
Q  127 acatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaagtcatcgacataagttc 226  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||    
T  20222918 acatgattattatcccccatcacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcattaatcaagtcatcgacataagctc 20222819  T
Q  227 atcattcatcaacaacaatcaagaaaggattact 260  Q
    ||||||||||||||||||||||||||||||||||    
T  20222818 atcattcatcaacaacaatcaagaaaggattact 20222785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 41 - 248
Target Start/End: Original strand, 11600380 - 11600589
Alignment:
Q  41 atcataatccacataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattat 139  Q
    |||| |||||||||||||| |||||  |||||||||||| ||||||||||| | ||| |||||||||| |||||||||||||||||||||| ||||||||    
T  11600380 atcacaatccacataaacaaacataagcattcaaggatttcatgcataacacatatatataaccatccctcctagaatactagcatcacattattattat 11600479  T
Q  140 cccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacataagttcatcattcatcaa 238  Q
    ||| ||   ||||||| ||||||||||| ||||| ||||||||||||||| |||||||||||  ||| ||||||||||||||||| ||||||||||||||    
T  11600480 ccctcattccatacatctcaagctatcacattaccaacatagcatagcaagcatattcaatctttaatcaagtcatcgacataagctcatcattcatcaa 11600579  T
Q  239 caacaatcaa 248  Q
    ||||||||||    
T  11600580 caacaatcaa 11600589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 23216951 - 23217100
Alignment:
Q  11 cacagatccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccat 109  Q
    |||||||||||||||||||||| | || ||| |||||||| ||||||||| |||||| ||||||||||||||||||||||| | |||||||| ||||| |    
T  23216951 cacagatccactgggggtaagcttcacatcaatcataatcaacataaacaaacataggcattcaaggattcatgcataacacatatacataatcatccct 23217050  T
Q  110 cctagaatactagcatcacatgattattatcccccaacacatacatttca 159  Q
    |||| |||||||| ||||||||||||||| || ||| |||||||||||||    
T  23217051 cctaaaatactagtatcacatgattattaccctccatcacatacatttca 23217100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 109 - 260
Target Start/End: Original strand, 22311515 - 22311667
Alignment:
Q  109 tcctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaacca 208  Q
    |||||||||| |||||||||||||||||||||||||| | ||||||| ||||| ||||| |||||||||||||||||  | ||||||||||| |||| ||    
T  22311515 tcctagaatattagcatcacatgattattatcccccatcccatacatctcaagttatcacattactaacatagcatacaagcatattcaatctctaaaca 22311614  T
Q  209 agtcatcgacataagttcatcattcatcaacaacaatcaa-gaaaggattact 260  Q
    | ||||||||||||| |||||||| ||||||| ||| ||| ||||||||||||    
T  22311615 actcatcgacataagctcatcatttatcaacatcaaccaatgaaaggattact 22311667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 41 - 260
Target Start/End: Original strand, 24237347 - 24237571
Alignment:
Q  41 atcataatccacataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattatta- 138  Q
    ||||||||| ||||||||| ||||| |||||||| |||| ||||||||||| | ||||||| |||||| ||||| ||||||| ||||||||||||||||     
T  24237347 atcataatcaacataaacaaacataaacattcaaagatttcatgcataacacatatacatacccatccctcctataatactaacatcacatgattattat 24237446  T
Q  139 tcccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacataagttcatcattcatca 237  Q
    |||||||    || ||  ||||||||||| ||||||||||| ||||| ||| ||||||||||| |||| ||||||||||||||| | |||||||| ||||    
T  24237447 tcccccattcaatgcacctcaagctatcacattactaacatggcatatcaagcatattcaatctctaatcaagtcatcgacatatgctcatcatttatca 24237546  T
Q  238 acaa-caatcaa-gaaaggattact 260  Q
    ||||  |||||| ||||||||||||    
T  24237547 acaattaatcaatgaaaggattact 24237571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 167
Target Start/End: Original strand, 22319919 - 22320074
Alignment:
Q  14 agatccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatccatcc 111  Q
    ||||||||||||||||||  |||| ||| |||||||| ||||||||| |||||  |||||||||||| ||||||||||| | ||| |||||||||| |||    
T  22319919 agatccactgggggtaagttttacatcaatcataatcaacataaacaaacataagcattcaaggatttcatgcataacacatatatataaccatccctcc 22320018  T
Q  112 tagaatactagcatcacatgattattatcccccaacacatacatttcaagctatca 167  Q
    |||||||||||||||||||||||||||||||||| | ||||||| ||||| |||||    
T  22320019 tagaatactagcatcacatgattattatcccccatcccatacatctcaagttatca 22320074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 177
Target Start/End: Original strand, 23879283 - 23879420
Alignment:
Q  41 atcataatccacataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattat 139  Q
    ||||||||| ||||||||| |||||  ||||||||| || ||| ||||||| | |||||||||||||| |||||||||||||||||| ||||||||||||    
T  23879283 atcataatcaacataaacaaacataagcattcaaggctttcatacataacacatatacataaccatccctcctagaatactagcatctcatgattattat 23879382  T
Q  140 cccccaacacatacatttcaagctatcaaattactaac 177  Q
    ||||||   ||||||  ||||||||||| |||||||||    
T  23879383 cccccatttcatacacctcaagctatcacattactaac 23879420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 25608237 - 25608359
Alignment:
Q  41 atcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatc 140  Q
    ||||||||| ||||||||| |||||  |||| ||| ||||||||||| || | |||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  25608237 atcataatcaacataaacaaacataagcatttaagaattcatgcatagcacatatacataaacatccctcctataatactagcatcacatgattattatc 25608336  T
Q  141 ccccaacacatacatttcaagct 163  Q
    |||||   |||||||||||||||    
T  25608337 ccccattccatacatttcaagct 25608359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 189
Target Start/End: Original strand, 11542333 - 11542424
Alignment:
Q  98 ataaccatccatcctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaa 189  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||   ||||||  |||| |||||| |||||||||||||||||||||    
T  11542333 ataaccatccctcctagaatactagcatcacatgattattatcccccattccatacacctcaaactatcatattactaacatagcatagcaa 11542424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 260
Target Start/End: Original strand, 23217099 - 23217178
Alignment:
Q  182 catagcaacatattcaatcactaaccaagtcatcgacataagttcatcattcatcaacaacaatcaa-gaaaggattact 260  Q
    |||||||||||||||||||||||| ||| ||||| ||||||| |||||||| ||||||| ||||||| | ||||||||||    
T  23217099 catagcaacatattcaatcactaatcaaatcatcaacataagctcatcatttatcaacatcaatcaatggaaggattact 23217178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 31196473 - 31196426
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataaac 58  Q
    ||||||||||||| ||||||| ||||| ||||||||||||||||||||    
T  31196473 cacagatccactgagggtaagtattacatcatcataatccacataaac 31196426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 645995 - 645950
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    ||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  645995 cacagatccactgggggtaagtattacatcatcataatccaaataa 645950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 15931626 - 15931669
Alignment:
Q  18 ccactgggggtaagcattacgtc-atcataatccacataaacag 60  Q
    |||||||||||||||||||| || ||||||||||||||||||||    
T  15931626 ccactgggggtaagcattacatcaatcataatccacataaacag 15931669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 23229167 - 23229128
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataaa 57  Q
    ||||| |||||||||||||| |||||||||||||||||||    
T  23229167 ccactaggggtaagcattacatcatcataatccacataaa 23229128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 831730 - 831685
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    ||||||||||||| ||||||| ||||| ||||||||||||| ||||    
T  831730 cacagatccactgngggtaagtattacatcatcataatccaaataa 831685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 17731405 - 17731367
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  17731405 ccactgggggtaagtattacatcatcataatccacataa 17731367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 22311349 - 22311431
Alignment:
Q  11 cacagatccact-gggggtaagcattacgtca-tcataatccacataaacagacatagacattcaagga-ttcatgcataaca 90  Q
    |||||||||||| |||||||||| |||| | | |||||||| ||||||||| |||||  |||||||||| |||||||||||||    
T  22311349 cacagatccactcgggggtaagctttacattaatcataatcaacataaacaaacataagcattcaaggatttcatgcataaca 22311431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 23509043 - 23509088
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    ||||||||||||||||||||| ||||| | ||||||||||| ||||    
T  23509043 cacagatccactgggggtaagtattacattatcataatccaaataa 23509088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 41509147 - 41509102
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    ||||||||||||| ||||||| ||||| ||||||||||||| ||||    
T  41509147 cacagatccactgagggtaagtattacatcatcataatccaaataa 41509102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 3433742 - 3433698
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  3433742 acagatccactgggggtaagtattacattatcataatccaaataa 3433698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 6776446 - 6776402
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  6776446 acagatccactgggggtaagtattacattatcataatccaaataa 6776402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 13664767 - 13664723
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  13664767 acagatccactgggggtaagtattacattatcataatccaaataa 13664723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 13724042 - 13723998
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  13724042 acagatccactgggggtaagtattacattatcataatccaaataa 13723998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 17343456 - 17343500
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  17343456 acagatccactgggggtaagtattacattatcataatccaaataa 17343500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 18610404 - 18610448
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| ||| ||||||||| ||||    
T  18610404 acagatccactgggggtaagtattacatcaacataatccaaataa 18610448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 22909559 - 22909515
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  22909559 acagatccactgggggtaagtattacattatcataatccaaataa 22909515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 23350495 - 23350575
Alignment:
Q  55 aaacagacatagacattcaagga-ttcatgcataacaaacatacataaccatccatcctagaatactagcatcacatgatt 134  Q
    ||||| |||||  |||||||||| |||||| |||||| | |||||||  ||||| ||||| ||||||| ||||||||||||    
T  23350495 aaacaaacataagcattcaaggacttcatggataacacatatacatacacatccctcctaaaatactaacatcacatgatt 23350575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 24108681 - 24108637
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  24108681 acagatccactgggggtaagtattacattatcataatccaaataa 24108637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 28835956 - 28836000
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  28835956 acagatccactgggggtaagtattacattatcataatccaaataa 28836000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 11963902 - 11964152
Alignment:
Q  11 cacagatccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccat 109  Q
    |||||||||||||||||||||| | || ||| |||||||| ||||||||| |||||| ||||||||||||||||||||||| | |||||||| ||||| |    
T  11963902 cacagatccactgggggtaagcttcacatcaatcataatcaacataaacaaacataggcattcaaggattcatgcataacatatatacataatcatccct 11964001  T
Q  110 cctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaa 209  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||| |||    
T  11964002 cctagactactagcatcacatgattattatcccccatcacatacatttcaagctatgaagttactaacatagcatatcaacatattcaatcactaatcaa 11964101  T
Q  210 gtcatcgacataagttcatcattcatcaacaacaatcaagaaaggattact 260  Q
    |||||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  11964102 gtcatcgacataagctcatcattcatcatcaacaatcaagaaaagattact 11964152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 14345504 - 14345285
Alignment:
Q  41 atcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatc 140  Q
    ||||||||| ||||||||| ||||||||||| |||||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||||||||       
T  14345504 atcataatcaacataaacaaacatagacattaaaggattcatgcataacacatatacataatcatccctcctagaatactagcatcacatgattattgag 14345405  T
Q  141 ccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaagtcatcgacataagttcatcattcatcaaca 240  Q
     |||| || |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||  ||| |||| |||||||| ||||||| ||||||||    
T  14345404 acccatcatatacatttcaagttatcaaattactaacatagcataacaacatattcaatcactattcaaatcattgacataagctcatcatccatcaaca 14345305  T
Q  241 acaatcaagaaaggattact 260  Q
    ||||||||||||||||||||    
T  14345304 acaatcaagaaaggattact 14345285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 5453176 - 5452927
Alignment:
Q  11 cacagatccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccat 109  Q
    |||||||||| | |||||||| ||||| ||| |||||||| ||||||||| | |||  ||||||||||||||||||||| | | |||||||||||||| |    
T  5453176 cacagatccatttggggtaagtattacatcaatcataatcaacataaacaaatataagcattcaaggattcatgcataagacatatacataaccatccct 5453077  T
Q  110 cctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaa 209  Q
    || |||||||||||||||||||||| ||||| | || || | ||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||    
T  5453076 ccgagaatactagcatcacatgattgttatcactcatcata-acatttcaagctatcaaatgactaacatagcatatcaacatattcaatcactaatcaa 5452978  T
Q  210 gtcatcgacataagttcatcattcatcaacaacaatcaagaaaggattact 260  Q
    |||||||||||||  |||||||||||||||| |||||||||||||||||||    
T  5452977 gtcatcgacataaactcatcattcatcaacagcaatcaagaaaggattact 5452927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 53 - 260
Target Start/End: Complemental strand, 24227766 - 24227558
Alignment:
Q  53 ataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatcccccaacacata 152  Q
    ||||||| |||||  |||||||||||||||||||| || | |||||||||||||| ||||| |||||||||||||||| |||||||||||| | ||||||    
T  24227766 ataaacaaacatatgcattcaaggattcatgcatagcacatatacataaccatccctcctaaaatactagcatcacattattattatcccc-atcacata 24227668  T
Q  153 catttcaagctatcaaattactaacatagcatagcaacatattcaatcactaacc--aagtcatcgacataagttcatcattcatcaacaacaatcaaga 250  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |  |||||||||||||||| ||||||||||||||||||||||||||    
T  24227667 catttcaagctatcaaattactaacatagcatagcaacatatttaatcactaatcaaaagtcatcgacataagctcatcattcatcaacaacaatcaaga 24227568  T
Q  251 aaggattact 260  Q
    |||| |||||    
T  24227567 aagggttact 24227558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 98 - 260
Target Start/End: Original strand, 3671842 - 3672003
Alignment:
Q  98 ataaccatccatcctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattca 197  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||    
T  3671842 ataaccatccatcctagaatactagcatcacatgattgttatcccccatcata-acatttcaagctatcaaattactaacatagcatagcaacatattca 3671940  T
Q  198 atcactaaccaagtcatcgacataagttcatcattcatcaacaacaatcaagaaaggattact 260  Q
    |||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  3671941 atcactaatcaagtcatcaacataagctcatcattcatcaacaacaatcaagaaaggattact 3672003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 20456412 - 20456189
Alignment:
Q  41 atcataatccacataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattat 139  Q
    ||||||||| ||||||||| |||||  |||||||||||| ||||||||||| | |||||||||||||| ||||| |||||||||||||||||||||||||    
T  20456412 atcataatcaacataaacaaacataagcattcaaggatttcatgcataacacatatacataaccatccctcctataatactagcatcacatgattattat 20456313  T
Q  140 cccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacataagttcatcattcatcaa 238  Q
    || | | | ||||||| |||||||||||  |||||||||||||||||||| |||| |||||  |||| ||||||||||||||||| |||||||| |||||    
T  20456312 cctcaatctcatacatctcaagctatcacgttactaacatagcatagcaagcatactcaattcctaatcaagtcatcgacataagctcatcatttatcaa 20456213  T
Q  239 caa-caatcaa-gaaaggattact 260  Q
    |||  |||||| ||||||||||||    
T  20456212 caattaatcaatgaaaggattact 20456189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 68 - 242
Target Start/End: Complemental strand, 11765566 - 11765391
Alignment:
Q  68 cattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatc 166  Q
    |||||||||||| ||||||||||| | ||||||||| |||| ||||| ||||||||||||||||||||||||||||||| | ||||||| ||||||||||    
T  11765566 cattcaaggatttcatgcataacacatatacataacaatccctcctataatactagcatcacatgattattatcccccatcccatacatctcaagctatc 11765467  T
Q  167 aaattactaacatagcatagcaacatattcaatcactaaccaagtcatcgacataagttcatcattcatcaacaac 242  Q
    | |||||||||||| ||||  | ||||||||||| |||| ||||||||||||||||| |||||||| |||||||||    
T  11765466 acattactaacataacatacaagcatattcaatccctaatcaagtcatcgacataagctcatcatttatcaacaac 11765391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 97 - 241
Target Start/End: Complemental strand, 16837558 - 16837414
Alignment:
Q  97 cataaccatccatcctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattc 196  Q
    ||||||||||| |||||| ||||||||||||||| ||| ||| |||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  16837558 cataaccatccctcctagtatactagcatcacataattgttaccccccatcacatacatttcaagctatcaaattactaacatatcatagcaacagattc 16837459  T
Q  197 aatcactaaccaagtcatcgacataagttcatcattcatcaacaa 241  Q
    ||||||||| ||| | |||||| |||| |||| ||| ||||||||    
T  16837458 aatcactaatcaaattatcgacctaagctcataatttatcaacaa 16837414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 23492211 - 23492256
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||| |||||||| ||||| ||||||||||||||||||    
T  23492211 cacagatccactaggggtaagtattacatcatcataatccacataa 23492256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 34937546 - 34937591
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    ||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  34937546 cacagatccactgggggtaagtattacatcatcataatccaaataa 34937591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 11338820 - 11338782
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  11338820 ccactgggggtaagtattacatcatcataatccacataa 11338782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 23986377 - 23986339
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||||||||||| ||||    
T  23986377 ccactgggggtaagcattacatcatcataatccaaataa 23986339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 28888190 - 28888236
Alignment:
Q  11 cacagatccactggggg-taagcattacgtcatcataatccacataa 56  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||||||    
T  28888190 cacagatccactggggggtaagtattacatcatcataatccacataa 28888236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 25944775 - 25944730
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    ||||||||||||||||||||| ||||| | ||||||||||| ||||    
T  25944775 cacagatccactgggggtaagtattacattatcataatccaaataa 25944730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 10283 - 10327
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  10283 acagatccactgggggtaagtattacattatcataatccaaataa 10327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 1221850 - 1221806
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  1221850 acagatccactgggggtaagtattacattatcataatccaaataa 1221806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 3671724 - 3671804
Alignment:
Q  11 cacagatccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataaca 90  Q
    |||||||||||| |||||||| ||||  ||| |||||||  ||||||||| | |||  |||||||||||||| ||||||||    
T  3671724 cacagatccactaggggtaagtattatatcaatcataattaacataaacaaatataagcattcaaggattcacgcataaca 3671804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 9732806 - 9732762
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  9732806 acagatccactgggggtaagtattacattatcataatccaaataa 9732762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 10780329 - 10780285
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  10780329 acagatccactgggggtaagtattacattatcataatccaaataa 10780285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 11340575 - 11340619
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  11340575 acagatccactgggggtaagtattacattatcataatccaaataa 11340619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 18780259 - 18780215
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  18780259 acagatccactgggggtaagtattacattatcataatccaaataa 18780215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 22885258 - 22885214
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  22885258 acagatccactgggggtaagtattacattatcataatccaaataa 22885214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 25212006 - 25211962
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  25212006 acagatccactgggggtaagtattacattatcataatccaaataa 25211962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 25276158 - 25276114
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  25276158 acagatccactgggggtaagtattacattatcataatccaaataa 25276114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 35793369 - 35793325
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  35793369 acagatccactgggggtaagtattacattatcataatccaaataa 35793325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 43445925 - 43445881
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  43445925 acagatccactgggggtaagtattacattatcataatccaaataa 43445881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 8602584 - 8602826
Alignment:
Q  18 ccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatcctagaa 116  Q
    ||||||||||||||| |||| ||| |||||||| ||||||||| |||||| |||||||||||||||||||| || | |||||||||||||| ||||| ||    
T  8602584 ccactgggggtaagctttacatcaatcataatcaacataaacaaacataggcattcaaggattcatgcatatcacatatacataaccatccctcctaaaa 8602683  T
Q  117 tactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaagtcatcg 216  Q
    ||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8602684 tactagcatcatatgattattatcccacatcacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaatcaagtcatcg 8602783  T
Q  217 acataagttcatcattcatcaacaacaatcaagaaaggattact 260  Q
    ||||||  |||||||||||||| |||||||||||||||||||||    
T  8602784 acataaactcatcattcatcaa-aacaatcaagaaaggattact 8602826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 11 - 245
Target Start/End: Complemental strand, 17760680 - 17760445
Alignment:
Q  11 cacagatccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccat 109  Q
    |||||||||||| ||||||||| | || ||| |||||||| |||| |||| |||||| |||||||||||||||||||| || | |||||||||||||| |    
T  17760680 cacagatccactaggggtaagcttcacatcaatcataatcaacatgaacaaacataggcattcaaggattcatgcatatcacatatacataaccatccct 17760581  T
Q  110 cctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaa 209  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  17760580 cctagaatactagcatcacatgattattatcccccatcacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactgatcaa 17760481  T
Q  210 gtcatcgacataagttcatcattcatcaacaacaat 245  Q
    |||||||||||||| |||||||||||||||||||||    
T  17760480 gtcatcgacataagctcatcattcatcaacaacaat 17760445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 11 - 245
Target Start/End: Complemental strand, 19062000 - 19061765
Alignment:
Q  11 cacagatccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccat 109  Q
    |||||||||||| ||||||||| | || ||| |||||||| |||| |||| |||||| |||||||||||||||||||| || | |||||||||||||| |    
T  19062000 cacagatccactaggggtaagcttcacatcaatcataatcaacatgaacaaacataggcattcaaggattcatgcatatcacatatacataaccatccct 19061901  T
Q  110 cctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaa 209  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  19061900 cctagaatactagcatcacatgattattatcccccatcacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactgatcaa 19061801  T
Q  210 gtcatcgacataagttcatcattcatcaacaacaat 245  Q
    |||||||||||||| |||||||||||||||||||||    
T  19061800 gtcatcgacataagctcatcattcatcaacaacaat 19061765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 12950868 - 12951118
Alignment:
Q  11 cacagatccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccat 109  Q
    ||||||||||||||||||||| ||||| ||| |||||||| ||||||||| | |||  ||||||||||||||||||||||  | ||||||||||||||||    
T  12950868 cacagatccactgggggtaagtattacatcaatcataatcaacataaacaaatataagcattcaaggattcatgcataacccatatacataaccatccat 12950967  T
Q  110 cctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaa 209  Q
    |||||||||||||||||||| |||| |||||||||| || | |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  12950968 cctagaatactagcatcacacgattgttatcccccatcataaacatttcaagctatcaaattactaacatggcatagcaacatattcaatcactaatcaa 12951067  T
Q  210 gtcatcgacataagttcatcattcatcaacaacaatcaagaaaggattact 260  Q
    |||||||||||||| |||||||||||||||||||||  |||||||||||||    
T  12951068 gtcatcgacataagctcatcattcatcaacaacaatatagaaaggattact 12951118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 38813279 - 38813033
Alignment:
Q  14 agatccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatcct 112  Q
    ||||||||| |||||||| ||||| ||| |||||||| ||||||||| | |||  ||||||||||||||||||||||| | |||||||||||||| ||||    
T  38813279 agatccactaggggtaagtattacatcaatcataatcaacataaacaaatataagcattcaaggattcatgcataacacatatacataaccatccctcct 38813180  T
Q  113 agaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaagtc 212  Q
    |||||||||||||||||||||| |||||||||| || | |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  38813179 agaatactagcatcacatgattgttatcccccatcata-acatttcaagctatcaaattactaacatagcatatcaacatattcaatcactaatcaagtc 38813081  T
Q  213 atcgacataagttcatcattcatcaacaacaatcaagaaaggattact 260  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||    
T  38813080 atcgacataagctcatcattcatcaacaacaatcaagaaatgattact 38813033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 15988834 - 15989066
Alignment:
Q  18 ccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatcctagaa 116  Q
    ||||||||||||||| |||| ||| |||||||| |||||| || | ||| |||||||||||||||||||||||| | |||||||||||||| ||||||||    
T  15988834 ccactgggggtaagctttacatcaatcataatcaacataagcaaatataaacattcaaggattcatgcataacacatatacataaccatccctcctagaa 15988933  T
Q  117 tactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattcaatcactaaccaagtcatc 215  Q
    |||||  |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||| |||||||||    
T  15988934 tactataatcacaagattattatcccccatcacatacatttcaagctatcaaattactaacataacatagcaagcatattcaatctctaatcaagtcatc 15989033  T
Q  216 gacataagttcatcattcatcaacaacaatcaa 248  Q
    |||||||| ||||||||||||||||||||||||    
T  15989034 gacataagctcatcattcatcaacaacaatcaa 15989066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 25106193 - 25105973
Alignment:
Q  41 atcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatc 140  Q
    ||||||||| ||||||||| | |||  ||||||||||||||||||||||| | |||||||| ||||| ||||||||||||||||||||||||||||||||    
T  25106193 atcataatcaacataaacaaatataagcattcaaggattcatgcataacacatatacataatcatccctcctagaatactagcatcacatgattattatc 25106094  T
Q  141 ccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaagtcatcgacataagttcatcattcatcaaca 240  Q
    | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| |||||||    
T  25106093 ctccatcacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatctctaatcaagtcatcgacataagctcatcatttatcaaca 25105994  T
Q  241 acaatcaa-gaaaggattact 260  Q
     ||||||| |||| |||||||    
T  25105993 tcaatcaatgaaaagattact 25105973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 22 - 260
Target Start/End: Complemental strand, 31414511 - 31414272
Alignment:
Q  22 tgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatcctagaatact 120  Q
    ||||||||||| |||| ||| |||||||| ||||||||| ||||| |||| |||| |||||||||||||| | |||||||||||||| || |||||||||    
T  31414511 tgggggtaagctttacatcaatcataatcaacataaacaaacataaacatgcaagaattcatgcataacacatatacataaccatccctcgtagaatact 31414412  T
Q  121 agcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaagtcatcgacat 220  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||| |    
T  31414411 agcatcacatgattattatcccccatcacatacatttcaagctatcaaattactaacatagcataacaacatattcaatcactaatcaaatcatcgacct 31414312  T
Q  221 aagttcatcattcatcaacaacaatcaa-gaaaggattact 260  Q
    ||| |||||||| ||||||| ||||||| ||||||||||||    
T  31414311 aagctcatcatt-atcaacatcaatcaatgaaaggattact 31414272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 15551773 - 15551522
Alignment:
Q  11 cacagatccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatcca 108  Q
    ||||||||||| |||||||||| | || ||| |||||||| ||||||||| |||||| |||||||||||| ||||||||||| | ||||||||||||||     
T  15551773 cacagatccacagggggtaagcttcacatcaatcataatcaacataaacaaacataggcattcaaggatttcatgcataacacatatacataaccatccc 15551674  T
Q  109 tcctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaacca 208  Q
    |||||||||| || ||||||||||||||||||||||| ||||||||  || ||||||||||||||||||||| |||||||||||| || ||||||||  |    
T  15551673 tcctagaataataacatcacatgattattatcccccatcacatacaaatccagctatcaaattactaacatatcatagcaacatactctatcactaatta 15551574  T
Q  209 agtcatcgacataagttcatcattcatcaacaacaatcaagaaaggattact 260  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||    
T  15551573 agtcatcgacataagctcatcattcattaacaataatcaagaaaggactact 15551522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 98 - 260
Target Start/End: Complemental strand, 5230378 - 5230214
Alignment:
Q  98 ataaccatccatcctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattc 196  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||   ||||||  |||| |||||| ||||||||||||||||||||| |||||||    
T  5230378 ataaccatcccttctagaatactagcatcacatgattattatcccccattccatacacctcaatctatcatattactaacatagcatagcaagcatattc 5230279  T
Q  197 aatcactaaccaagtcatcgacataagttcatcattcatcaacaacaatcaa-gaaaggattact 260  Q
    |||| |||| ||||||||||||||||| |||||||| ||||||| |||||||  |||||||||||    
T  5230278 aatctctaatcaagtcatcgacataagctcatcatttatcaacatcaatcaattaaaggattact 5230214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 37918779 - 37918552
Alignment:
Q  18 ccactgggggtaagcattacgtca-tcataatccacataaacagacatagacatt-caaggatt-catgcataacaaacatacataaccatccatcctag 114  Q
    ||||||||||||||| |||| ||| |||||||| ||||||||| |||||  |||| |||  ||| ||||||||||| | |||||||||||||| |||||     
T  37918779 ccactgggggtaagctttacatcaatcataatcaacataaacaaacataagcatttcaataatttcatgcataacacatatacataaccatccctcctaa 37918680  T
Q  115 aatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagc-aacatattcaatcactaaccaagtca 213  Q
    ||||| ||||||||||||||||||||||| | | ||||||| ||||||||||| |||||||| |||||||||| || ||||||||||  ||| |||| ||    
T  37918679 aataccagcatcacatgattattatcccctatctcatacatctcaagctatcacattactaaaatagcatagcaaaaatattcaatccttaatcaagaca 37918580  T
Q  214 tcgacataagttcatcattcatcaacaa 241  Q
    |||||||||| |||||||  ||||||||    
T  37918579 tcgacataagctcatcatatatcaacaa 37918552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 38378128 - 38377913
Alignment:
Q  41 atcataatccacataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattat 139  Q
    ||||||||| ||||||||| |||||  |||||||||||| ||||||||||| | |||||||| ||||| ||||| ||||||| ||| |||||||||||||    
T  38378128 atcataatcaacataaacaaacataagcattcaaggatttcatgcataacacatatacataaacatccctcctacaatactaacatgacatgattattat 38378029  T
Q  140 cccccaacacatacatttcaagctatcaaattactaacatagcatagc-aacatattcaatcactaaccaagtcatcgacataagttcatcattcatcaa 238  Q
    ||||||   ||||||  ||||||||||| ||||||||||||||||| | ||||||||||||       ||||||||||| ||||| |||||||| |||||    
T  38378028 cccccattccatacacctcaagctatcacattactaacatagcataacaaacatattcaat-------caagtcatcgatataagctcatcatttatcaa 38377936  T
Q  239 caacaatcaa-gaaaggattact 260  Q
     | ||||||| ||||||||||||    
T  38377935 tatcaatcaatgaaaggattact 38377913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 41 - 260
Target Start/End: Original strand, 17391309 - 17391531
Alignment:
Q  41 atcataatccacataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattat 139  Q
    ||||||||| |||| |||| |||||  |||||||||||| ||||||||||| | |||||||  ||||| ||||||||||||| |||||||||||||||||    
T  17391309 atcataatcaacattaacaaacataagcattcaaggatttcatgcataacacatatacatactcatccttcctagaatactaacatcacatgattattat 17391408  T
Q  140 cccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacataagttcatcattcatcaa 238  Q
    |||| |  |||||||| ||| ||||||| | | |||||||| |||| ||| |||||||||||  ||  |||||||| |||||||  |||||||| |||||    
T  17391409 cccctattacatacatatcatgctatcagaattctaacataacatatcaagcatattcaatctatagtcaagtcattgacataacctcatcatttatcaa 17391508  T
Q  239 caacaatcaa-gaaaggattact 260  Q
    ||  |||||| ||||||||||||    
T  17391509 cattaatcaatgaaaggattact 17391531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 41 - 189
Target Start/End: Complemental strand, 14182248 - 14182099
Alignment:
Q  41 atcataatccacataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattat 139  Q
    ||||||||| ||||||||| |||||  |||||||||||| ||||||||||| | |||||||  ||||| ||||||||||||| |||||||||||||||||    
T  14182248 atcataatcaacataaacaaacataagcattcaaggatttcatgcataacacatatacatactcatccctcctagaatactaacatcacatgattattat 14182149  T
Q  140 cccccaacacatacatttcaagctatcaaattactaacatagcatagcaa 189  Q
    || |||   |||||| |||||||||||| ||||||||||| |||||||||    
T  14182148 cctccattccatacacttcaagctatcacattactaacatggcatagcaa 14182099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 152
Target Start/End: Complemental strand, 6817507 - 6817369
Alignment:
Q  14 agatccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatcct 112  Q
    ||||||||| ||||||||| | || ||| |||||||| ||||||| | |||||| |||||||||||| ||||||| || | |||||||||||||| ||||    
T  6817507 agatccactaggggtaagcttcacatcaatcataatcaacataaataaacataggcattcaaggatttatgcatagcacatatacataaccatccctcct 6817408  T
Q  113 agaatactagcatcacatgattattatcccccaacacata 152  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  6817407 agaatactagcatcacatgatta-tatcccccatcacata 6817369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 110 - 260
Target Start/End: Original strand, 11400574 - 11400726
Alignment:
Q  110 cctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattcaatcactaacca 208  Q
    |||||||||||| |||| ||||||||||||||| ||   ||||||  ||||| ||||| |||||||||||||||||  |  ||||||||||| |||| ||    
T  11400574 cctagaatactaacatcccatgattattatccctcattccatacacctcaagttatcacattactaacatagcataatatgcatattcaatctctaatca 11400673  T
Q  209 agtcatcgacataagttcatcattcatcaacaacaatcaa-gaaaggattact 260  Q
    ||||||||||||||| |||||||| ||||||| ||||||| |||| |||||||    
T  11400674 agtcatcgacataagctcatcatttatcaacatcaatcaatgaaatgattact 11400726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 145
Target Start/End: Original strand, 8022167 - 8022261
Alignment:
Q  51 acataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatccccca 145  Q
    |||||| || |||||  |||||||||||||||||||| | || ||||||| ||| |  ||||||||||||| | |||||||| ||||||||||||    
T  8022167 acataatcaaacataaccattcaaggattcatgcatatcgaatatacatacccaacattcctagaatactaacttcacatgaatattatccccca 8022261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 12490697 - 12490652
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  12490697 cacagatccactgggggtaagtattacatcatcataatccacataa 12490652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 17936430 - 17936475
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  17936430 cacagatccactgggggtaagtattacatcatcataatccacataa 17936475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 40041422 - 40041355
Alignment:
Q  41 atcataatccacataaacagacatagacatt-caaggatt-catgcataacaaacatacataaccatc 106  Q
    ||||||||| ||||||||| ||||| ||||| |||||||| ||||||||||| |||||||||||||||    
T  40041422 atcataatcaacataaacaaacataaacatttcaaggatttcatgcataacacacatacataaccatc 40041355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 7851658 - 7851703
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    ||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  7851658 cacagatccactgggggtaagtattacatcatcataatccaaataa 7851703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 11381057 - 11381102
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| |||||| ||||| ||||||||||||||||||    
T  11381057 cacagatccactggaggtaagtattacatcatcataatccacataa 11381102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 11063038 - 11063000
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  11063038 ccactgggggtaagtattacatcatcataatccacataa 11063000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 11199433 - 11199395
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  11199433 ccactgggggtaagtattacatcatcataatccacataa 11199395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 15548810 - 15548848
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  15548810 ccactgggggtaagtattacatcatcataatccacataa 15548848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 17137681 - 17137719
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  17137681 ccactgggggtaagtattacatcatcataatccacataa 17137719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 39654145 - 39654183
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  39654145 ccactgggggtaagtattacatcatcataatccacataa 39654183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 11812777 - 11812821
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    ||||||||||| |||||||| ||||| ||||||||||||| ||||    
T  11812777 acagatccactaggggtaagtattacatcatcataatccaaataa 11812821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 16819019 - 16819063
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  16819019 acagatccactgggggtaagtattacattatcataatccaaataa 16819063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 18908655 - 18908699
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  18908655 acagatccactgggggtaagtattacattatcataatccaaataa 18908699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 22273010 - 22273054
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  22273010 acagatccactgggggtaagtattacattatcataatccaaataa 22273054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 53 - 260
Target Start/End: Complemental strand, 6966 - 6759
Alignment:
Q  53 ataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatcccccaacacata 152  Q
    ||||||| |||||| ||||||||||||||||||||  | | |||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||    
T  6966 ataaacaaacataggcattcaaggattcatgcatagtatatatacataaccatccctcctaaaatactagcatcacatgattattatcccccatcacata 6867  T
Q  153 catttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaagtcatcgacataagttcatcattcatcaacaacaatcaagaaa 252  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  6866 catttcaagctatcaaattactaacataacatagcaacatattcaatcactaatcaagtcatcgatataagctcatcattcatcaacaacaatcaagaaa 6767  T
Q  253 ggattact 260  Q
    ||||||||    
T  6766 ggattact 6759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 260
Target Start/End: Complemental strand, 37058 - 36817
Alignment:
Q  20 actgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggat-tcatgcataacaaacatacataaccatccatcctagaat 117  Q
    ||||||||||||| | || ||| |||||||| ||||||||| | |||  ||||||||||| |||||||||||| | |||| || |||||  | |||||||    
T  37058 actgggggtaagcttcacatcaatcataatcaacataaacaaa-ataagcattcaaggatctcatgcataacacatatacctacccatcatttctagaat 36960  T
Q  118 actagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaagtcatcga 217  Q
    |||| ||||||||||||||||||||| | | ||||||| ||||||||||| |||||||||| ||||||||||   |||||||| |||| ||||||||| |    
T  36959 actaacatcacatgattattatcccc-atcccatacatctcaagctatcacattactaacacagcatagcaagcaattcaatctctaatcaagtcatcaa 36861  T
Q  218 cataagttcatcattcatcaacaacaatcaa-gaaaggattact 260  Q
    |||||| |||||||| ||||||| ||||||| ||||||||||||    
T  36860 cataagctcatcatttatcaacatcaatcaatgaaaggattact 36817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 153; Significance: 4e-81; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 78358 - 78138
Alignment:
Q  41 atcataatccacataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattat 139  Q
    ||||||||| ||||||||| |||||  |||||||||||| ||||||||||| | |||||||||||||| |||||||||||||   |||||||||| ||||    
T  78358 atcataatcaacataaacaaacataagcattcaaggatttcatgcataacatatatacataaccatccctcctagaatactaaactcacatgattgttat 78259  T
Q  140 cccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaagtcatcgacataagttcatcattcatcaac 239  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  78258 cccccatcacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaatcaagtcatcgacataagctcatcattcatcaac 78159  T
Q  240 aacaatcaagaaaggattact 260  Q
    ||||||||||||| |||||||    
T  78158 aacaatcaagaaatgattact 78138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 20192032 - 20192261
Alignment:
Q  18 ccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatcctagaa 116  Q
    ||||||||||||||| | || ||| |||| ||| ||||||||| | |||  ||||||| ||||||||||||||| | |||||||||||| | ||||||||    
T  20192032 ccactgggggtaagcttcacatcaatcatgatcaacataaacaaatataagcattcaaagattcatgcataacacatatacataaccattcctcctagaa 20192131  T
Q  117 tactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaagtcatcg 216  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||    
T  20192132 tactaacatcacatgattattatccccaatcacatacatttcaagctatcaaattactaacatagcatatcaacatattcaatctctaatcaagtcatcg 20192231  T
Q  217 acataagttcatcattcatcaacaacaatc 246  Q
    ||||||| | || ||| ||||||| |||||    
T  20192232 acataagcttataatttatcaacatcaatc 20192261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 33395168 - 33395403
Alignment:
Q  18 ccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatccatcctaga 115  Q
    ||||||||||||||| |||| ||| |||||||| ||||||||| |||||  ||||||| |||| ||||||||||| |  || |||||||||| |||||||    
T  33395168 ccactgggggtaagctttacatcaatcataatcaacataaacaaacataagcattcaaagatttcatgcataacacatgtatataaccatccctcctaga 33395267  T
Q  116 atactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaagtcatc 215  Q
    ||||||||||||||||||||||||||||||   ||||||| |||||||||||| |||||||||||| |||         ||||||||||| |||||||||    
T  33395268 atactagcatcacatgattattatcccccattccatacatctcaagctatcaacttactaacatagtata---------tcaatcactaatcaagtcatc 33395358  T
Q  216 gacataagttcatcattcatcaacaacaatcaagaaaggattact 260  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  33395359 gacataagctcatcattcatcaacaacaatcaagaaaggattact 33395403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 61 - 260
Target Start/End: Original strand, 20820769 - 20820971
Alignment:
Q  61 acatagacattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatcccccaacacatacatttca 159  Q
    ||||| ||||||||||||| ||||||||||| | ||||||| |||||| ||||||||||||| |||||||||||||||||||||||   ||||||  | |    
T  20820769 acataaacattcaaggatttcatgcataacacatatacatacccatccctcctagaatactaacatcacatgattattatcccccattccatacacctta 20820868  T
Q  160 agctatcaaattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacataagttcatcattcatcaacaacaatcaa-gaaaggatt 257  Q
    |||||||| |||| |||||||||||||||| ||||| ||||| |||| ||||||||||||||||| |||||||| ||||||| ||||||| |||||||||    
T  20820869 agctatcacattaataacatagcatagcaagcatatgcaatctctaaacaagtcatcgacataagctcatcatttatcaacatcaatcaatgaaaggatt 20820968  T
Q  258 act 260  Q
    |||    
T  20820969 act 20820971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 24498464 - 24498425
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatcca 51  Q
    |||||||||||||||||||||||||| | |||||||||||    
T  24498464 acagatccactgggggtaagcattacattatcataatcca 24498425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 20956904 - 20956866
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  20956904 ccactgggggtaagtattacatcatcataatccacataa 20956866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 22837278 - 22837240
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  22837278 ccactgggggtaagtattacatcatcataatccacataa 22837240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 22837481 - 22837443
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  22837481 ccactgggggtaagtattacatcatcataatccacataa 22837443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 51658273 - 51658235
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  51658273 ccactgggggtaagtattacatcatcataatccacataa 51658235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 20252317 - 20252362
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||| |||||||||||| ||||| ||||||||||||| ||||    
T  20252317 cacagatctactgggggtaagtattacatcatcataatccaaataa 20252362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 22080165 - 22080210
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    ||||||||||||||| ||||| ||||| ||||||||||||| ||||    
T  22080165 cacagatccactgggcgtaagtattacatcatcataatccaaataa 22080210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 15863532 - 15863488
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  15863532 acagatccactgggggtaagtattacattatcataatccaaataa 15863488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 36358190 - 36358154
Alignment:
Q  20 actgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  36358190 actgggggtaagtattacatcatcataatccacataa 36358154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 6e-77; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 29162776 - 29162539
Alignment:
Q  22 tgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatcctagaatact 120  Q
    ||||||||||| |||| ||| || ||||| ||||||||| |||||| ||||||||||||||||||||||| | |||||||  ||||| ||||||||||||    
T  29162776 tgggggtaagctttacatcagtcctaatcaacataaacaaacataggcattcaaggattcatgcataacacatatacatagtcatccctcctagaatact 29162677  T
Q  121 agcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaagtcatcgacat 220  Q
    | |||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||    
T  29162676 atcatcacatgactattatcccccatcacatacatttcaagctatcaaattactaatatagcatagcaacatattcaatcactaatcaaatcatcgacat 29162577  T
Q  221 aagttcatcattcatcaacaacaatcaagaaaggatta 258  Q
    ||| ||||||| ||| |||||||||||||||| |||||    
T  29162576 aagctcatcatccataaacaacaatcaagaaatgatta 29162539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 41 - 248
Target Start/End: Original strand, 21929771 - 21929979
Alignment:
Q  41 atcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatc 140  Q
    ||||||||| |||||| || |||||  ||||||||||||||||||||||| | |||||||||||||  ||||||||||||| |||||||   ||||||||    
T  21929771 atcataatcaacataagcaaacataagcattcaaggattcatgcataacacatatacataaccatctctcctagaatactatcatcacaatgttattatc 21929870  T
Q  141 ccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacataagttcatcattcatcaac 239  Q
    |  || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||| ||||||||  |||||    
T  21929871 cgtcatcacatacatttcaagctatcaaattactaacatagcatagcaagcatattcaatctctaatcaaatcatcgacataagctcatcattgctcaac 21929970  T
Q  240 aacaatcaa 248  Q
    |||||||||    
T  21929971 aacaatcaa 21929979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 41 - 260
Target Start/End: Original strand, 23219634 - 23219857
Alignment:
Q  41 atcataatccacataaacagacatagacatt-caaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattatta 138  Q
    ||||||||| ||||||||| |||||  |||| |||||||| ||||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||    
T  23219634 atcataatcaacataaacaaacataagcatttcaaggatttcatgcataacacatatacataaccatccctcctagaatacaagcatcacatgattatta 23219733  T
Q  139 tcccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacataagttcatcattcatca 237  Q
    |||| || | ||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||| |||||||| ||||    
T  23219734 tccctcatcccatacatctcaagttatcacattactaacatagcatagcaagcatattcaatctctaaacaactcatcgacataagctcatcatttatca 23219833  T
Q  238 acaacaatcaa-gaaaggattact 260  Q
    ||| ||||||| ||||||||||||    
T  23219834 acatcaatcaatgaaaggattact 23219857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 41 - 260
Target Start/End: Original strand, 16131591 - 16131814
Alignment:
Q  41 atcataatccacataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattat 139  Q
    ||||||||| ||||||||| |||||  |||||||||||| ||||||||| | | ||||||| |||||| ||||||||||||| |||||||| ||||||||    
T  16131591 atcataatcaacataaacaaacataagcattcaaggatttcatgcataaaacatatacatatccatccctcctagaatactaacatcacataattattat 16131690  T
Q  140 cccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacataagttcatcattcatcaa 238  Q
    ||||||   ||||||| ||| ||||||| | | |||||||||||||| || ||||||||||| |||| ||||||||| |||||||||| ||||| |||||    
T  16131691 cccccattccatacatgtcatgctatcacaattctaacatagcatagaaagcatattcaatctctaatcaagtcatcaacataagttcctcatttatcaa 16131790  T
Q  239 caa-caatcaa-gaaaggattact 260  Q
    |||  |||||| ||||||||||||    
T  16131791 caattaatcaatgaaaggattact 16131814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 98 - 260
Target Start/End: Complemental strand, 15294644 - 15294480
Alignment:
Q  98 ataaccatccatcctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattc 196  Q
    |||||||||| |||| ||||||||| || | |||||||||||||| ||   |||| || ||||||||||| |||||||||||| |||||||| |||||||    
T  15294644 ataaccatccctcctcgaatactagtattatatgattattatccctcataccatatatctcaagctatcacattactaacataacatagcaagcatattc 15294545  T
Q  197 aatcactaaccaagtcatcgacataagttcatcattcatcaacaacaatcaa-gaaaggattact 260  Q
    |||| |||| |||||||||||||||||||||||||| ||||||| ||||||| |||| |||||||    
T  15294544 aatctctaatcaagtcatcgacataagttcatcatttatcaacatcaatcaatgaaatgattact 15294480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 260
Target Start/End: Complemental strand, 4230161 - 4229967
Alignment:
Q  68 cattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatc 166  Q
    |||||||||||| |||| ||| || | |||||||  ||||| | ||| || |||| |||||||||||||||||||||||   || ||  | |||||||||    
T  4230161 cattcaaggatttcatgtatatcacatatacatactcatcccttctataaaactaacatcacatgattattatcccccattccacaccat-caagctatc 4230063  T
Q  167 aaattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacataagttcatcattcatcaacaacaatcaa-gaaaggattact 260  Q
    | | ||||||||||||||||| | ||||||||||| |||| ||||||||| ||||||| |||||||| ||||||| ||||||| ||||||||||||    
T  4230062 acaatactaacatagcatagcgagcatattcaatctctaatcaagtcatcaacataagctcatcatttatcaacatcaatcaatgaaaggattact 4229967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 68 - 260
Target Start/End: Complemental strand, 31163136 - 31162949
Alignment:
Q  68 cattcaaggattc-atgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatc 166  Q
    ||||||||||||  |||||||||  | ||||||| |||||| ||||||||||||| ||||||||||||||||| |||||   ||||||  ||||||||||    
T  31163136 cattcaaggattttatgcataactcatatacatacccatccctcctagaatactaacatcacatgattattattccccatttcatacacctcaagctatc 31163037  T
Q  167 aaattactaacatagcatagc-aacatattcaatcactaaccaagtcatcgacataagttcatcattcatcaacaacaatc-aagaaaggattact 260  Q
    | |||||||||||| |||||| |||||||||        | || ||||||||| |||| |||||||| ||||||| ||||| ||||||||||||||    
T  31163036 acattactaacataacatagcaaacatattc--------atcatgtcatcgacgtaagctcatcatttatcaacatcaatcaaagaaaggattact 31162949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 229
Target Start/End: Complemental strand, 4174532 - 4174370
Alignment:
Q  68 cattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatc 166  Q
    |||||||||||| |||| ||| || | |||||||  ||||| | ||| || |||| ||||||||||||||||||||| |  ||| ||  | |||||||||    
T  4174532 cattcaaggatttcatgtatatcacatatacatactcatcccttctataaaactaacatcacatgattattatccccaattacacaccat-caagctatc 4174434  T
Q  167 aaattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacataagttcatc 229  Q
    | | ||||||||||||||||| | ||||||||||| |||| ||||||||| ||||||| |||||    
T  4174433 acaatactaacatagcatagcgagcatattcaatctctaatcaagtcatcaacataagctcatc 4174370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 260
Target Start/End: Original strand, 16374325 - 16374529
Alignment:
Q  61 acatagacattcaaggattcatgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatcccccaacacatacatttcaa 160  Q
    ||||| |||||||||||||||||||| ||||| | |||||  || |  ||||||||||||| || |||||   ||||||||||||   ||||| | |||     
T  16374325 acataaacattcaaggattcatgcatgacaaatacacatactcaacattcctagaatactaccaccacatatatattatcccccattccatacttatcat 16374424  T
Q  161 gctatcaaattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacata---agttcatcattcatcaacaacaatc-aagaaagga 255  Q
     |||||| | | || |||||| ||| ||| ||||||||||  |||| |||||||||||| ||   || |||||||| ||||||| ||||| |||||||||    
T  16374425 actatcacaattcttacatagaataacaagcatattcaatttctaatcaagtcatcgacgtaagcagctcatcatttatcaacatcaatcaaagaaagga 16374524  T
Q  256 ttact 260  Q
    |||||    
T  16374525 ttact 16374529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 35011341 - 35011296
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    ||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  35011341 cacagatccactgggggtaagtattacatcatcataatccaaataa 35011296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 35017670 - 35017625
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    ||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  35017670 cacagatccactgggggtaagtattacatcatcataatccaaataa 35017625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 260
Target Start/End: Complemental strand, 7829654 - 7829624
Alignment:
Q  230 attcatcaacaacaatcaagaaaggattact 260  Q
    |||||||||||||||||||||||||||||||    
T  7829654 attcatcaacaacaatcaagaaaggattact 7829624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 16889675 - 16889637
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  16889675 ccactgggggtaagtattacatcatcataatccacataa 16889637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 18397139 - 18397183
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||| |||| ||||| ||||||||||||||||||    
T  18397139 cacagatccactgggg-taagtattacatcatcataatccacataa 18397183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 18578809 - 18578854
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    ||||||||||||||||||||| ||||| | ||||||||||| ||||    
T  18578809 cacagatccactgggggtaagtattacatgatcataatccaaataa 18578854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 16235744 - 16235788
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  16235744 acagatccactgggggtaagtattacattatcataatccaaataa 16235788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 18843924 - 18843880
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  18843924 acagatccactgggggtaagtattacattatcataatccaaataa 18843880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 19627474 - 19627518
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| ||| ||||||||| ||||    
T  19627474 acagatccactgggggtaagtattacatcaacataatccaaataa 19627518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 23975684 - 23975728
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  23975684 acagatccactgggggtaagtattacattatcataatccaaataa 23975728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 15116173 - 15115925
Alignment:
Q  11 cacagatccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccat 109  Q
    ||||||||||||||||||||| ||||| ||| |||||||| |||||| || | |||  |||||||||| |||||||||||| | | |||||| ||||| |    
T  15116173 cacagatccactgggggtaagtattacatcaatcataatcaacataa-caaatataagcattcaaggaatcatgcataacacataaacataatcatccct 15116075  T
Q  110 cctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaa 209  Q
    ||||||||||||||||||||||||| |||||||||| || |  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  15116074 cctagaatactagcatcacatgattgttatcccccatcatac-catttcaagctatcaaattactaacatagcatagcaacatattcaatcactaatcaa 15115976  T
Q  210 gtcatcgacataagttcatcattcatcaacaacaatcaagaaaggattact 260  Q
    |||||||||| ||| ||||||||||||||||   |||||||||||||||||    
T  15115975 gtcatcgacaaaagctcatcattcatcaacattgatcaagaaaggattact 15115925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 15216117 - 15215885
Alignment:
Q  11 cacagatccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatcca 108  Q
    |||||||||||| || |||||| | || ||| |||||||| || |||||| |||||  |||||||||||| ||| ||||||| | |||||||| |||||     
T  15216117 cacagatccactaggtgtaagcttcacatcaatcataatcaacgtaaaca-acataagcattcaaggatttcatacataacacatatacataaacatccc 15216019  T
Q  109 tcctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattcaatcactaacc 207  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||| ||| ||||||| |||| |    
T  15216018 tcctaaaatactagcatcacatgattattatcccccatcacatacatctcaagctatcacattactaacatagcatagcaagcatcttcaatctctaatc 15215919  T
Q  208 aagtcatcgacataagttcatcattcatcaacaa 241  Q
    || ||||||||||||| |||||||||||||||||    
T  15215918 aaatcatcgacataagctcatcattcatcaacaa 15215885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 41 - 238
Target Start/End: Complemental strand, 5372967 - 5372768
Alignment:
Q  41 atcataatccacataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattat 139  Q
    ||||||||| ||||||||| |||||  |||||||||||| ||||||||||| | |||||||| ||||| |||||||||||||||||||||||||||||||    
T  5372967 atcataatcaacataaacaaacataagcattcaaggatttcatgcataacacatatacataatcatccctcctagaatactagcatcacatgattattat 5372868  T
Q  140 cccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacataagttcatcattcatcaa 238  Q
    |||| | | ||||||| |||||||||||  |||||||||||||||||||| |||| |||||  |||| ||||||||| |||||||||||||||| |||||    
T  5372867 ccccaatcccatacatctcaagctatcacgttactaacatagcatagcaagcatactcaattcctaatcaagtcatcaacataagttcatcatttatcaa 5372768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 54365952 - 54365726
Alignment:
Q  18 ccactgggggtaagcattacgtcat-cataatccacataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatccatcctaga 115  Q
    ||||| ||||||||| | || |||| ||||||| ||||||||| |||||  |||||||||||| ||||||||||| | ||||||| ||| || |||||||    
T  54365952 ccacttggggtaagcttcacatcattcataatcaacataaacaaacataagcattcaaggatttcatgcataacacatatacatacccacccctcctaga 54365853  T
Q  116 atactagcatcacatgattatta-tcccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattcaatcactaaccaagtca 213  Q
    |||||| |||||||||||||||| |||||||   ||| || |||||||||||| ||||||||||||||||| ||| ||||||||||| |||| || ||||    
T  54365852 atactaacatcacatgattattattcccccattccatgcacttcaagctatcacattactaacatagcatatcaagcatattcaatctctaatcacgtca 54365753  T
Q  214 tcgacataagttcatcattcatcaaca 240  Q
    |||||||||| |||||||| |||||||    
T  54365752 tcgacataagctcatcatttatcaaca 54365726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 98 - 260
Target Start/End: Complemental strand, 41918970 - 41918807
Alignment:
Q  98 ataaccatccatcctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattc 196  Q
    |||||||||| | ||||||||||||||||||||||||| |||||| ||   ||||||  ||||||||||| ||||||||||||||||||||| |||||||    
T  41918970 ataaccatcccttctagaatactagcatcacatgattaatatccctcattgcatacacctcaagctatcatattactaacatagcatagcaagcatattc 41918871  T
Q  197 aatcactaaccaagtcatcgacataagttcatcattcatcaacaacaatcaa-gaaaggattact 260  Q
    |||| |||| ||||||||||||||||| |||||||| ||||||| ||||||| ||||||||||||    
T  41918870 aatctctaatcaagtcatcgacataagctcatcatt-atcaacatcaatcaatgaaaggattact 41918807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 258
Target Start/End: Complemental strand, 12136022 - 12135875
Alignment:
Q  112 tagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattcaatcactaaccaag 210  Q
    |||||||||||||||| |||||||||||||||||   |||| |  ||||||||||| ||||||||||||||||||||| ||||||||||| |||| ||||    
T  12136022 tagaatactagcatcagatgattattatcccccattccatagacctcaagctatcatattactaacatagcatagcaagcatattcaatctctaatcaag 12135923  T
Q  211 tcatcgacataagttcatcattcatcaacaacaatcaa-gaaaggatta 258  Q
    ||||||||||||  |||||||| ||||||| ||||||| ||||||||||    
T  12135922 tcatcgacataaactcatcatt-atcaacatcaatcaatgaaaggatta 12135875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 40902839 - 40902761
Alignment:
Q  182 catagcaacatattcaatcactaaccaagtcatcgacataagttcatcattcatcaacaacaatcaagaaaggattact 260  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40902839 catagcaacatattcaatcactaatcaagtcatcgacataagctcatcattcatcaacaacaatcaagaaaggattact 40902761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 112 - 241
Target Start/End: Complemental strand, 17378025 - 17377894
Alignment:
Q  112 tagaatactagcatcacatgattattat-cccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattcaatcactaaccaa 209  Q
    |||||||||| ||||||||||||||||| ||||||   ||| ||  |||| |||||| ||||||||||||||||| ||| ||||||||||| |||| |||    
T  17378025 tagaatactaacatcacatgattattattcccccattccatgcacctcaaactatcacattactaacatagcatatcaagcatattcaatctctaatcaa 17377926  T
Q  210 gtcatcgacataagttcatcattcatcaacaa 241  Q
    ||||||||||||||||||||||| ||||||||    
T  17377925 gtcatcgacataagttcatcatttatcaacaa 17377894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 260
Target Start/End: Original strand, 9650183 - 9650395
Alignment:
Q  51 acataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatcccccaacac 149  Q
    |||||||||  |||| ||| ||||||||| ||||||| |||   |||||||||||||| || ||||||| || |||||||||| |||| |||||||   |    
T  9650183 acataaacaatcataaacactcaaggatttcatgcatgacacgtatacataaccatccctcttagaatattaacatcacatgaatattgtcccccattcc 9650282  T
Q  150 atacatttcaagctatcaaattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacataagttcatcattcatcaacaacaatcaa 248  Q
    |||||  ||| ||||||| | | ||||| ||||||| ||| || |||||||| |||| |||||||| |||||||| |||||||| ||||||| |||||||    
T  9650283 atacacatcatgctatcacaattctaacctagcataccaagcacattcaatctctaatcaagtcattgacataagctcatcatttatcaacatcaatcaa 9650382  T
Q  249 -gaaaggattact 260  Q
     ||||||||||||    
T  9650383 tgaaaggattact 9650395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 43283318 - 43283273
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||| |||||||||||| ||||| ||||||||||||||||||    
T  43283318 cacagatctactgggggtaagtattacatcatcataatccacataa 43283273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 13811576 - 13811538
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  13811576 ccactgggggtaagtattacatcatcataatccacataa 13811538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 42707007 - 42707049
Alignment:
Q  18 ccactgggggtaagcattacgtc-atcataatccacataaaca 59  Q
    |||||||||||||||||||| || |||||||||||||||||||    
T  42707007 ccactgggggtaagcattacatcaatcataatccacataaaca 42707049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 16520777 - 16520814
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatc 49  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  16520777 acagatccactgggggtaagtattacatcatcataatc 16520814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 145
Target Start/End: Original strand, 21958097 - 21958190
Alignment:
Q  52 cataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatccccca 145  Q
    ||||| || |||||| |||||||||||||||| ||| |||| ||||||| ||| |  || |||||||||| |  |||| || ||||||||||||    
T  21958097 cataatcaaacataggcattcaaggattcatgtatagcaaatatacatacccagcattcatagaatactaactccacaggaatattatccccca 21958190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 8372583 - 8372627
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  8372583 acagatccactgggggtaagtattacattatcataatccaaataa 8372627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 15211487 - 15211535
Alignment:
Q  8 cagcacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    ||||||||||||||| |||||||| ||||| | ||||||||||| ||||    
T  15211487 cagcacagatccactaggggtaagtattacattatcataatccaaataa 15211535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 15274687 - 15274643
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  15274687 acagatccactgggggtaagtattacattatcataatccaaataa 15274643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 17150272 - 17150228
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  17150272 acagatccactgggggtaagtattacattatcataatccaaataa 17150228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 18246154 - 18246198
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  18246154 acagatccactgggggtaagtattacattatcataatccaaataa 18246198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 19998493 - 19998537
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  19998493 acagatccactgggggtaagtattacattatcataatccaaataa 19998537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 22356640 - 22356596
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  22356640 acagatccactgggggtaagtattacattatcataatccaaataa 22356596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 26678155 - 26678199
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  26678155 acagatccactgggggtaagtattacattatcataatccaaataa 26678199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 23007 - 22762
Alignment:
Q  18 ccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataacaaacatacataaccatccatcctagaa 116  Q
    ||||||||||||||| |||| ||| |||||||| ||||||||| |||||  |||||||||||||||||||| || | |||||||||||||  ||||||||    
T  23007 ccactgggggtaagctttacatcaatcataatcaacataaacaaacatatgcattcaaggattcatgcatagcacatatacataaccatctctcctagaa 22908  T
Q  117 tactagcatca------catgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaag 210  Q
    |||||||||||      |||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||  ||     
T  22907 tactagcatcattatcacatgattattttcccccatctcatacatttcaagctattaaattactaacatagcatagcaacatattcaattactaataaa- 22809  T
Q  211 tcatcgacataagttcatcattcatcaacaacaa-tcaagaaaggatta 258  Q
      ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  22808 --atcgacataagctcatcattcatcaacaacaattcaagaaaggatta 22762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 15189 - 14967
Alignment:
Q  41 atcataatccacataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattat 139  Q
    ||||||||| ||||||||| |||||  |||||||||||| ||||||||||| | ||||||| |||||| ||||||||||||| |||||||||||||||||    
T  15189 atcataatcaacataaacaaacataagcattcaaggatttcatgcataacatatatacatacccatccctcctagaatactaacatcacatgattattat 15090  T
Q  140 cccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacataagttcatcattcatcaa 238  Q
    ||||||   ||||||  ||||||||||| |||| |||| |||||||| || ||||||||||| |||| ||||||||||||||||| |||||||| |||||    
T  15089 cccccattccatacacctcaagctatcacattattaacctagcatagaaagcatattcaatctctaatcaagtcatcgacataagctcatcatttatcaa 14990  T
Q  239 caacaatcaa-gaaaggattact 260  Q
    || ||||||| ||||| ||||||    
T  14989 catcaatcaatgaaagaattact 14967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 256643 - 256421
Alignment:
Q  41 atcataatccacataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattat 139  Q
    ||||||||| ||||||||| |||||  |||||||||||| ||| ||||||| | |||||||||||||| ||||||||||||| | |||||||||||||||    
T  256643 atcataatcaacataaacaaacataagcattcaaggatttcatacataacacatatacataaccatccctcctagaatactaacttcacatgattattat 256544  T
Q  140 cccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacataagttcatcattcatcaa 238  Q
    ||||||   ||||||  ||||||||||| |||||||||| |||||||||| ||||||||||| | || ||||||||||||||||| |||||||| |||||    
T  256543 cccccattccatacacctcaagctatcacattactaacacagcatagcaagcatattcaatctcaaatcaagtcatcgacataagctcatcatttatcaa 256444  T
Q  239 caacaatcaa-gaaaggattact 260  Q
    || ||||||| ||| ||||||||    
T  256443 catcaatcaatgaacggattact 256421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 270304 - 270349
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    ||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  270304 cacagatccactgggggtaagtattacatcatcataatccaaataa 270349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0601 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 3297 - 3074
Alignment:
Q  41 atcataatccacataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattat 139  Q
    ||||||||| | ||||||| |||||  |||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||  |||| ||||||||||    
T  3297 atcataatcaaaataaacaaacataagcattcaaggatttcatgcataacaaatatacataaccatccctcctagaatactagtctcacgtgattattat 3198  T
Q  140 cccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacataagttcatcattcatcaa 238  Q
    || ||| |  |||||| ||||||||||| ||||||||||||||||| ||| ||||||||||| |||| ||||||||||||| ||  |||||||| |||||    
T  3197 cctccatcctatacatctcaagctatcacattactaacatagcataacaagcatattcaatctctaatcaagtcatcgacacaaactcatcatttatcaa 3098  T
Q  239 caa-caatcaa-gaaaggattact 260  Q
    |||  |||||| ||||||||||||    
T  3097 caattaatcaatgaaaggattact 3074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 41 - 260
Target Start/End: Original strand, 19645 - 19867
Alignment:
Q  41 atcataatccacataaacagacatagacatt-caaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattatta 138  Q
    ||||||||| ||||||||| ||||| ||||| |||||||| ||||||||||| | |||||||||||||| ||||||| ||||||||||||||||||||||    
T  19645 atcataatcaacataaacaaacataaacatttcaaggatttcatgcataacatatatacataaccatccctcctagagtactagcatcacatgattatta 19744  T
Q  139 tcccccaacacatacatttcaagctatcaaattactaacatagcatagc-aacatattcaatcactaaccaagtcatcgacataagttcatcattcatca 237  Q
    |||| ||   ||||||  |||| |||||| ||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||  |||||||| ||||    
T  19745 tcccacattccatacacctcaacctatcatattactaacatagcatagcaaacatattcaatctctaatcaagtcatcgacataaactcatcatt-atca 19843  T
Q  238 acaacaatcaa-gaaaggattact 260  Q
    | | ||||||| ||||| ||||||    
T  19844 atatcaatcaatgaaagaattact 19867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 137 - 260
Target Start/End: Original strand, 10648 - 10771
Alignment:
Q  137 tatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaacatattcaatcactaaccaagtcatcgacataagttcatcattcatc 236  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  10648 tatccctcatcacatacatttcaagctatcaaattactaacatagcataacaacatattcaatcactaatcaagtcatcgacataagctcatcattcatc 10747  T
Q  237 aacaacaatcaagaaaggattact 260  Q
    || ||||||||||||| |||||||    
T  10748 aataacaatcaagaaatgattact 10771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 10565 - 10645
Alignment:
Q  11 cacagatccactgggggtaagcattacgtca-tcataatccacataaacagacatagacattcaaggattcatgcataaca 90  Q
    |||||||||||||||||||||  | || ||| |||||||| ||||||||| |||||| |||||||||||||||||||||||    
T  10565 cacagatccactgggggtaagtttcacatcaatcataatcaacataaacaaacataggcattcaaggattcatgcataaca 10645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 94 - 259
Target Start/End: Complemental strand, 121767 - 121600
Alignment:
Q  94 atacataaccatccatcctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-cat 192  Q
    ||||||| || ||| ||||||||||||| |||||||||||||||||||||||   ||||||  ||||||||||| ||||||| ||||||||||||| |||    
T  121767 atacatacccgtccctcctagaatactaacatcacatgattattatcccccattccatacacctcaagctatcacattactatcatagcatagcaagcat 121668  T
Q  193 attcaatcactaaccaagtcatcgacataagttcatcattcatcaacaacaatc-aagaaaggattac 259  Q
    |||||||| ||||  |||||||||||||||| ||||| |||||||||||||||| |||||||||||||    
T  121667 attcaatctctaaataagtcatcgacataagctcatctttcatcaacaacaatcaaagaaaggattac 121600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 106482 - 106442
Alignment:
Q  20 actgggggtaagcattacgtcatcataatccacataaacag 60  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  106482 actgggggtaagcattacatcattataatccacataaacag 106442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 13234 - 13013
Alignment:
Q  41 atcataatccacataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattat 139  Q
    ||||||||| ||||||||| |||||  |||||||||||| ||||||||||| | ||||||| |||| | ||||||||||||| ||||||| |||||||||    
T  13234 atcataatcaacataaacaaacataagcattcaaggatttcatgcataacacatatacatacccatgcctcctagaatactatcatcacaagattattat 13135  T
Q  140 cccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacataagttcatcattcatcaa 238  Q
    ||||||   ||| ||  ||||||||||| ||||||||||||||||||||| ||||||||||| |||| ||||||||| |  || | |||||||| ||| |    
T  13134 cccccattccatgcacctcaagctatcacattactaacatagcatagcaagcatattcaatctctaatcaagtcatcaatgtaggctcatcatt-atcga 13036  T
Q  239 caacaatcaa-gaaaggattact 260  Q
    || ||||||| ||||||||||||    
T  13035 catcaatcaatgaaaggattact 13013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 98 - 260
Target Start/End: Original strand, 8781 - 8945
Alignment:
Q  98 ataaccatccatcctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagcatagcaa-catattc 196  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||   |||| || ||||||||||| |||| |||||||||||| ||| |||||||    
T  8781 ataaccatccctcctagaatactagcatcacatgattattatcccccattccataaatctcaagctatcacattattaacatagcatatcaagcatattc 8880  T
Q  197 aatcactaaccaagtcatcgacataagttcatcattcatcaacaacaatcaa-gaaaggattact 260  Q
    |||   ||| ||||||||||||||||| |||| ||| ||||||| ||||||| ||||||||||||    
T  8881 aatatttaatcaagtcatcgacataagctcataatttatcaacatcaatcaatgaaaggattact 8945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 260
Target Start/End: Complemental strand, 22395 - 22200
Alignment:
Q  68 cattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatc 166  Q
    |||||||||||| ||||||| ||| | ||| |||||||||| ||||||||||||||||||||||||||||||||||||    ||||||  | ||||||||    
T  22395 cattcaaggatttcatgcatgacacatatatataaccatccctcctagaatactagcatcacatgattattatcccccgttccatacacctaaagctatc 22296  T
Q  167 aaattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacataagttcatcattcatcaacaacaatcaa-gaaaggattact 260  Q
      |||||||||||||| |||||| ||| ||||||| ||||  |||||||||||||||| |||||||| ||||||| |||||||  |||||||||||    
T  22295 tcattactaacatagcctagcaagcatgttcaatctctaattaagtcatcgacataagctcatcatttatcaacatcaatcaataaaaggattact 22200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 83 - 184
Target Start/End: Complemental strand, 16683 - 16582
Alignment:
Q  83 gcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatcccccaacacatacatttcaagctatcaaattactaacatagc 182  Q
    |||||||| | |||||||| ||||| | | |||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  16683 gcataacacatatacataatcatcccttccagaatactagcatcacataattattatcccccatcacatacatttcaaactatcaaattactaacatagc 16584  T
Q  183 at 184  Q
    ||    
T  16583 at 16582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1923 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold1923
Description:

Target: scaffold1923; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 260
Target Start/End: Original strand, 723 - 933
Alignment:
Q  53 ataaacagacatagacattcaaggatt-catgcataacaaacatacataaccatccatcctagaatactagcatcacatgattattatcccccaacacat 151  Q
    |||||||  |||| ||||||||||||| ||||||| ||| | || ||||||||||| ||  |||||| || |||||||| | |||| |||||||   |||    
T  723 ataaacaaccataaacattcaaggatttcatgcatgacacatatgcataaccatccctctgagaatattaacatcacataaatattgtcccccattccat 822  T
Q  152 acatttcaagctatcaaattactaacatagcatagcaa-catattcaatcactaaccaagtcatcgacataagttcatcattcatcaacaacaatcaa-g 249  Q
    |||  ||| ||||||| | | ||||| |||||| |||| || |||||||| |||| |||||||| |||||||| ||||| || ||||||| ||||||| |    
T  823 acacatcatgctatcacaattctaacctagcattgcaagcacattcaatctctaatcaagtcattgacataagctcatcgtttatcaacatcaatcaatg 922  T
Q  250 aaaggattact 260  Q
    |||||||||||    
T  923 aaaggattact 933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 30625 - 30670
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  30625 cacagatccactgggggtaagtattacatcatcataatccacataa 30670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 15925 - 15854
Alignment:
Q  190 catattcaatcactaaccaagtcatcgacataagttcatcattcatcaacaacaatcaa-gaaaggattact 260  Q
    ||||||||||| |||| ||||||||||||||  | |||||||| ||||||| ||||||| ||||||||||||    
T  15925 catattcaatctctaatcaagtcatcgacattggatcatcatttatcaacatcaatcaatgaaaggattact 15854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 708 - 663
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    ||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  708 cacagatccactgggggtaagtattacatcatcataatccaaataa 663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 91043 - 90998
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    ||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  91043 cacagatccactgggggtaagtattacatcatcataatccaaataa 90998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 29406 - 29449
Alignment:
Q  18 ccactgggggtaagcattacgtc-atcataatccacataaacag 60  Q
    |||||||||||||||||||| || ||||||||||||||||||||    
T  29406 ccactgggggtaagcattacatcaatcataatccacataaacag 29449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0589 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0589
Description:

Target: scaffold0589; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 6084 - 6122
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  6084 ccactgggggtaagtattacatcatcataatccacataa 6122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 14172 - 14134
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  14172 ccactgggggtaagtattacatcatcataatccacataa 14134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 27928 - 27970
Alignment:
Q  14 agatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||| ||||| ||||||||||||| ||||    
T  27928 agatccactgggggtaagtattacatcatcataatccaaataa 27970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 1990 - 1948
Alignment:
Q  18 ccactgggggtaagcattacgtc-atcataatccacataaaca 59  Q
    |||||||||||||||||||| || |||||||||||||||||||    
T  1990 ccactgggggtaagcattacatcaatcataatccacataaaca 1948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 68576 - 68614
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  68576 ccactgggggtaagtattatgtcatcataatccacataa 68614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 92234 - 92272
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  92234 ccactgggggtaagtattacatcatcataatccacataa 92272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 86174 - 86129
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    ||||||||||||||||||||| ||||| | ||||||||||| ||||    
T  86174 cacagatccactgggggtaagtattacattatcataatccaaataa 86129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0503 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0503
Description:

Target: scaffold0503; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 9666 - 9703
Alignment:
Q  18 ccactgggggtaagcattacgtcatcataatccacata 55  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  9666 ccactgggggtaagcattacatcaacataatccacata 9703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0447 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0447
Description:

Target: scaffold0447; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 2450 - 2495
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||| |||||||| ||||| ||||||||||||| ||||    
T  2450 cacagatccactcggggtaagtattacatcatcataatccaaataa 2495  T

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Target: scaffold0383 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 5314 - 5359
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||| |||||||| ||||| ||||||||||||| ||||    
T  5314 cacagatccactcggggtaagtattacatcatcataatccaaataa 5359  T

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Target: scaffold0292 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 17710 - 17755
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||| |||||||||| ||||| |||||| |||||||||||    
T  17710 cacagatccaatgggggtaagtattacatcatcaaaatccacataa 17755  T

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Target: scaffold0269 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 3031 - 3075
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||| |||| ||||| ||||||||||||||||||    
T  3031 cacagatccactgggg-taagtattacatcatcataatccacataa 3075  T

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Target: scaffold0269; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 257 - 301
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  257 acagatccactgggggtaagtattacattatcataatccaaataa 301  T

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Target: scaffold0171 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 31013 - 31058
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||| |||||||| ||||| ||||||||||||| ||||    
T  31013 cacagatccacttggggtaagtattacatcatcataatccaaataa 31058  T

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Target: scaffold0158 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 16351 - 16396
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||| |||||||| ||||| ||||||||||||| ||||    
T  16351 cacagatccacttggggtaagtattacatcatcataatccaaataa 16396  T

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Target: scaffold0158; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 23015 - 23060
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||| |||||||| ||||| ||||||||||||| ||||    
T  23015 cacagatccacttggggtaagtattacatcatcataatccaaataa 23060  T

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Target: scaffold0051 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 56181 - 56226
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||| |||||||| ||||| ||||||||||||| ||||    
T  56181 cacagatccactaggggtaagtattacatcatcataatccaaataa 56226  T

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Target: scaffold0034 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 77573 - 77618
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    ||||||||||||||||||||| ||||  ||||||||||||| ||||    
T  77573 cacagatccactgggggtaagtattatatcatcataatccaaataa 77618  T

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Target: scaffold0622 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 7420 - 7456
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataa 47  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  7420 cacagatccactgggggtaagtattacatcatcataa 7456  T

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Target: scaffold0597 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0597
Description:

Target: scaffold0597; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 3107 - 3063
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    ||||||||||| |||||||| ||||| ||||||||||||| ||||    
T  3107 acagatccactaggggtaagtattacatcatcataatccaaataa 3063  T

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Target: scaffold0529 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0529
Description:

Target: scaffold0529; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 780 - 824
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  780 acagatccactgggggtaagtattacattatcataatccaaataa 824  T

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Target: scaffold0342 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0342
Description:

Target: scaffold0342; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 2682 - 2638
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  2682 acagatccactgggggtaagtattacattatcataatccaaataa 2638  T

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Target: scaffold0338 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 6969 - 7001
Alignment:
Q  24 ggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||| ||||||||||||||||||||||||    
T  6969 ggggtaagtattacgtcatcataatccacataa 7001  T

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Target: scaffold0253 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0253
Description:

Target: scaffold0253; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 14825 - 14869
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  14825 acagatccactgggggtaagtattacattatcataatccaaataa 14869  T

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Target: scaffold0226 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 15263 - 15219
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  15263 acagatccactgggggtaagtattacattatcataatccaaataa 15219  T

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Target: scaffold0039 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 21369 - 21329
Alignment:
Q  11 cacagatccactgggggtaagcattacgtcatcataatcca 51  Q
    ||||||||||||||||||||| ||||| | |||||||||||    
T  21369 cacagatccactgggggtaagtattacattatcataatcca 21329  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 5197 - 5241
Alignment:
Q  12 acagatccactgggggtaagcattacgtcatcataatccacataa 56  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||||    
T  5197 acagatccactgggggtaagtattacattatcataatccaaataa 5241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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