View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14633_low_15 (Length: 232)

Name: NF14633_low_15
Description: NF14633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14633_low_15
NF14633_low_15
[»] chr5 (13 HSPs)
chr5 (5-216)||(30790470-30790681)
chr5 (127-214)||(30809338-30809428)
chr5 (126-216)||(41779910-41780000)
chr5 (131-188)||(30801654-30801711)
chr5 (125-188)||(32573495-32573558)
chr5 (127-217)||(10703685-10703774)
chr5 (138-180)||(31337508-31337550)
chr5 (126-214)||(30805473-30805564)
chr5 (125-158)||(24806005-24806038)
chr5 (31-60)||(30799126-30799155)
chr5 (137-188)||(30657336-30657388)
chr5 (130-181)||(30701798-30701849)
chr5 (130-181)||(30736913-30736964)
[»] chr2 (1 HSPs)
chr2 (121-188)||(1681445-1681512)
[»] chr3 (2 HSPs)
chr3 (125-216)||(21319526-21319616)
chr3 (124-188)||(21316314-21316377)
[»] chr7 (1 HSPs)
chr7 (127-215)||(6962434-6962522)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 30790681 - 30790470
Alignment:
Q  5 tcagggaatcagagatgtcttcctactccattcacattttttatcaatgcacttcatttcaaaatactcatgcaatgattttggacaatcagcatcggtt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30790681 tcagggaatcagagatgtcttcctactccattcacattttttatcaatgcacttcatttcaaaatactcatgcaatgattttggacaatcagcatcgggt 30790582  T
Q  105 tcacatggaatatcagtatgtgctgtaatgaaaaaagataataaaataatgttactgaaacatgataaaagattgtgtatgaacaacaaatcaaaaaaga 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  30790581 tcacatggaatatcagtatgtgctgtaatgaaaaaagataataaaataatgttactgaaacatgataaaagattgtgtatgaacaacaaagcaaaaaagg 30790482  T
Q  205 aaatttgaaaag 216  Q
    ||||||||||||    
T  30790481 aaatttgaaaag 30790470  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 214
Target Start/End: Complemental strand, 30809428 - 30809338
Alignment:
Q  127 ctgtaatgaaaaaagataataaaataatgttactgaaacatgataaaaga---ttgtgtatgaacaacaaatcaaaaaagaaaatttgaaa 214  Q
    |||||||||| ||| ||| ||||||||||||||| ||| |||||||||||   |||| ||||||| ||||| |||| ||||||||||||||    
T  30809428 ctgtaatgaataaatatagtaaaataatgttactaaaagatgataaaagaaagttgtttatgaactacaaagcaaagaagaaaatttgaaa 30809338  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 216
Target Start/End: Complemental strand, 41780000 - 41779910
Alignment:
Q  126 gctgtaatgaaaaaagataataaaataatgttactgaaacatgataaaagattgtgtatgaacaacaaatcaaaaaagaaaatttgaaaag 216  Q
    ||||||||||||| |||| |||| ||||||||||| |||||| | ||||||||||||||| || |  ||  |||||||||||| |||||||    
T  41780000 gctgtaatgaaaagagatgataacataatgttactaaaacattagaaaagattgtgtatgcactatgaagtaaaaaagaaaatgtgaaaag 41779910  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 30801711 - 30801654
Alignment:
Q  131 aatgaaaaaagataataaaataatgttactgaaacatgataaaagattgtgtatgaac 188  Q
    |||||| ||| ||||||||||||||||||| |||||||||||||  ||||||||||||    
T  30801711 aatgaagaaatataataaaataatgttactaaaacatgataaaaagttgtgtatgaac 30801654  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 32573495 - 32573558
Alignment:
Q  125 tgctgtaatgaaaaaagataataaaataatgttactgaaacatgataaaagattgtgtatgaac 188  Q
    ||||||||||||||||  ||| ||||||||  || | |||||||||||||||||||||||||||    
T  32573495 tgctgtaatgaaaaaaagtaacaaaataatactattaaaacatgataaaagattgtgtatgaac 32573558  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 10703774 - 10703685
Alignment:
Q  127 ctgtaatgaaaaaagataataaaataatgttactgaaacatgataaaagattgtgtatgaacaacaaatcaaaaaagaaaatttgaaaagt 217  Q
    |||||||||| ||||||||||||||||| | | | ||| || |||||| ||| |||| |||||||||| |||||||| |||||| ||||||    
T  10703774 ctgtaatgaacaaagataataaaataatatcaataaaatat-ataaaatattttgtacgaacaacaaagcaaaaaaggaaattttaaaagt 10703685  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 31337550 - 31337508
Alignment:
Q  138 aaagataataaaataatgttactgaaacatgataaaagattgt 180  Q
    ||||||||||||||||| ||||| |||||||||||||||||||    
T  31337550 aaagataataaaataatattactaaaacatgataaaagattgt 31337508  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 214
Target Start/End: Complemental strand, 30805564 - 30805473
Alignment:
Q  126 gctgtaatgaaaaaagataataaaataatgttactgaaacatgataaaaga---ttgtgtatgaacaacaaatcaaaaaagaaaatttgaaa 214  Q
    ||||||| ||| ||| ||| ||||||| ||||||| ||| |||||||||||   |||||||||||| ||||| |||| ||| ||||||||||    
T  30805564 gctgtaacgaataaatatagtaaaatagtgttactaaaagatgataaaagaaagttgtgtatgaactacaaagcaaagaaggaaatttgaaa 30805473  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 24806038 - 24806005
Alignment:
Q  125 tgctgtaatgaaaaaagataataaaataatgtta 158  Q
    ||||| ||||||||||||||||||||||||||||    
T  24806038 tgctgcaatgaaaaaagataataaaataatgtta 24806005  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 60
Target Start/End: Complemental strand, 30799155 - 30799126
Alignment:
Q  31 tccattcacattttttatcaatgcacttca 60  Q
    ||||||||||||||||||||||||||||||    
T  30799155 tccattcacattttttatcaatgcacttca 30799126  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 30657336 - 30657388
Alignment:
Q  137 aaaagataataaaataatgtta-ctgaaacatgataaaagattgtgtatgaac 188  Q
    |||||| || |||||||||||| || |||||||||||||||||||||| ||||    
T  30657336 aaaagaaaagaaaataatgttaactaaaacatgataaaagattgtgtacgaac 30657388  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 30701798 - 30701849
Alignment:
Q  130 taatgaaaaaa-gataataaaataatgttactgaaacatgataaaagattgtg 181  Q
    ||||||||||| |||||||||||||||||||| ||| ||| ||||||||||||    
T  30701798 taatgaaaaaacgataataaaataatgttact-aaatatgttaaaagattgtg 30701849  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 30736913 - 30736964
Alignment:
Q  130 taatgaaaaaa-gataataaaataatgttactgaaacatgataaaagattgtg 181  Q
    ||||||||||| |||||||||||||||||||| ||| ||| ||||||||||||    
T  30736913 taatgaaaaaacgataataaaataatgttact-aaatatgttaaaagattgtg 30736964  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 1681445 - 1681512
Alignment:
Q  121 tatgtgctgtaatgaaaaaagataataaaataatgttactgaaacatgataaaagattgtgtatgaac 188  Q
    |||||||||||||||||| |||||||||||||||||||   |||||||||||||||||||||| ||||    
T  1681445 tatgtgctgtaatgaaaagagataataaaataatgttatcaaaacatgataaaagattgtgtacgaac 1681512  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 125 - 216
Target Start/End: Complemental strand, 21319616 - 21319526
Alignment:
Q  125 tgctgtaatgaaaaaagataataaaataatgttactgaaacatgataaaagattgtgtatgaacaacaaatcaaaaaagaaaatttgaaaag 216  Q
    |||||||||||||||| | ||||||||||| ||||| ||||  |||||||||||||||| |||| |  ||| ||||||||||||||||||||    
T  21319616 tgctgtaatgaaaaaacaaaataaaataatattactaaaacgagataaaagattgtgtacgaacta-taattaaaaaagaaaatttgaaaag 21319526  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 21316377 - 21316314
Alignment:
Q  124 gtgctgtaatgaaaaaagataataaaataatgttactgaaacatgataaaagattgtgtatgaac 188  Q
    ||||||||||||||||| | |||| |||||||||||| ||||  ||| |||||||||||| ||||    
T  21316377 gtgctgtaatgaaaaaacaaaatataataatgttactaaaacgagat-aaagattgtgtacgaac 21316314  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 6962522 - 6962434
Alignment:
Q  127 ctgtaatgaaaaaagataataaaataatgttactgaaacatgataaaagattgtgtatgaacaacaaatcaaaaaagaaaatttgaaaa 215  Q
    ||||||||| |||||| ||||||||||||||| | ||||| ||||||| ||||| ||  |||||||||  ||| |||||||||||||||    
T  6962522 ctgtaatgacaaaagagaataaaataatgttaataaaacaagataaaatattgtatacaaacaacaaagtaaataagaaaatttgaaaa 6962434  T

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