View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14633_low_16 (Length: 215)
Name: NF14633_low_16
Description: NF14633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14633_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 7668266 - 7668448
Alignment:
| Q |
18 |
aaaaaccagtgatagggctaaattataagttgatataacatacctcaattgccatacatccccctagaccaagatttggttgcattggatgtgctgcatc |
117 |
Q |
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| T |
7668266 |
aaaaacaagtgatagggctaaattataagttgatataacatacctcaattgccatacatccccctagaccaagatttggttgcattggatgtgctgcatc |
7668365 |
T |
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| Q |
118 |
tcctaataaagtaactctcccaattccccaagtgttgataatgtctctatcatatatatccctctgcagaatcatattctctg |
200 |
Q |
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| T |
7668366 |
tcctaataaagtaactctcccaattccccaagtgttgataatgtctctatcatatatatccctctgcagaatcatattctctg |
7668448 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 32789618 - 32789586
Alignment:
| Q |
133 |
tctcccaattccccaagtgttgataatgtctct |
165 |
Q |
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| T |
32789618 |
tctcccaattccccaagtgttgataatgtctct |
32789586 |
T |
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