View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14633_low_3 (Length: 409)
Name: NF14633_low_3
Description: NF14633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14633_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 12 - 394
Target Start/End: Complemental strand, 46442653 - 46442257
Alignment:
| Q |
12 |
aaaatgtctttaaaaccactcttgagaattcaccctataaataataattccgtcaataaagttcccattcatttggaaccaa--------------aaag |
97 |
Q |
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| T |
46442653 |
aaaatgtctttaaaaccactcttgagaattcaccatataaataataattccgtcaataaagttcccattcatttggaaccgagagattttaccagaaaag |
46442554 |
T |
|
| Q |
98 |
gtgtaaacataaatgatccaaaatctccacctagatgtcattgaatccaaaatcttacacctatattctcaaagtgaactttgaatatgtatgctaatca |
197 |
Q |
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| T |
46442553 |
gcgtaaacataaatgatccaaaatctccacctagatgtcattgaatccaaaatcttacacctatattctcaaagtgaactttgaatatatatgctaatca |
46442454 |
T |
|
| Q |
198 |
agagtataataaataagtagtaaaagatcaccaataatcnnnnnnntaaaggtaacaaactaacaataattattgaaatccaacaacatacaaacattaa |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46442453 |
agagtataataaataagtagtaaaagatcaccaataatcaaaaaaataaaggtaacaaactaacaataattattgaaatccatcaacatacaaacattaa |
46442354 |
T |
|
| Q |
298 |
tcaattttgatgacatgaaagttcatcaaccttgaaacaaataggtgttcaaaagcataaactttattaaatattgatcaagattgatggcaaaacc |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46442353 |
tcaattttgatgacatgaaagttcatcaaccttgaaacaaataggtgttcaaaagcataaactttattaaatattgatcaagattgatggcaaaacc |
46442257 |
T |
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