View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14633_low_6 (Length: 341)
Name: NF14633_low_6
Description: NF14633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14633_low_6 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 46031989 - 46032326
Alignment:
| Q |
1 |
tatacattttttaaaactaattactaacatttgtcggaggtttaggacttacgctttcctcgaacatccaggaccttaaaaggttcgcttctaccttccc |
100 |
Q |
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| T |
46031989 |
tatacattttttaaaactaattactaacatttgtcggaggtttaggacttactctttcctcgaacatccaggaccttaaaaggttcgcttctaccttctc |
46032088 |
T |
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| Q |
101 |
gaatgcacactccaattgaatttgattgaactattttaacccctagccgaaattgaccgtttcttccctttgatatatctgtaaactcaatatctttgtc |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46032089 |
gaatgcacactccaattgaattagattgaactattttaacccctagccgaaattgaccgtttcttccctttgatatatctgtaaactcaatctctttgtc |
46032188 |
T |
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| Q |
201 |
gatatcagcaactccaatatttcttagtgtaatgaatttgtttcctttcaacagttcttcttttccctctcttggaggtgcaatttgagtattaaattcc |
300 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46032189 |
gatatcagcaactcc---atttcttagtgtaatgaattcgtttcctttcaacagttcttcttttccctctcttggaggtgcaatttgagtattaaattcc |
46032285 |
T |
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| Q |
301 |
tcagctgtccaatcctctttttcaaagtcaccatataggac |
341 |
Q |
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| T |
46032286 |
tcagctgtccaatcctctttttcaaagtcaccatataggac |
46032326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 46019315 - 46019654
Alignment:
| Q |
1 |
tatacattttttaaa-actaattactaacatttgtcggaggtttaggac-ttacgctttcctcgaacatccaggaccttaaaaggttcgcttctaccttc |
98 |
Q |
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|||||||||||||| | |||||||||| |||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46019315 |
tatacattttttaacgattaattactaaagtttgtcggagatttaggaccttaccctttcctcgaacatccaggaccttaaaaggttcgcttctaccttc |
46019414 |
T |
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| Q |
99 |
ccgaatgcacactccaattgaatttgattgaactattttaacccctagccgaaattgaccgtttcttccctttgatatatctgtaaactcaatatctttg |
198 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||| || |
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| T |
46019415 |
ccgaatgcacgctccaattgaattagattgaactattttaacccctagccgaaattgaccggttcttctctttgatatatctgtaaactcaatctctatg |
46019514 |
T |
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| Q |
199 |
tcgatatcagcaactccaatatttcttagtgtaatgaatttgtttcctttcaacagttcttcttttccctctcttggaggtgcaatttgagtattaaatt |
298 |
Q |
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| T |
46019515 |
ttgatatcagcaactcc---atttcttagtgtaatgattttatttcctttcagtagttgtccttttccaactcttggaggtacaatttgagtattaaact |
46019611 |
T |
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| Q |
299 |
cctcagctgtccaatcctctttttcaaagtcaccatataggac |
341 |
Q |
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| T |
46019612 |
cctcagctgtccaatcctctttttcaaagtcaccatataggac |
46019654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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