View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14634_high_1 (Length: 355)
Name: NF14634_high_1
Description: NF14634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14634_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 34 - 341
Target Start/End: Original strand, 36467345 - 36467652
Alignment:
| Q |
34 |
gtaggttataattttaaaatgtctacatatagtgaagcaacatcgccttttgatgtatatagtgatacagataaggtggaatttaatagtgttaataata |
133 |
Q |
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| T |
36467345 |
gtaggttataattttaaaatgtctacatatagtgaagcaacatcgccttttgatgtatatagtgatacagataaggtggaatttaatagtgttaataata |
36467444 |
T |
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| Q |
134 |
ttgacactgataatgatacaaatggggtggaatttaattgtgttaatgatgttgacactgatagtgacattgatagtgatactgaagatataaaagttaa |
233 |
Q |
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| T |
36467445 |
ttgacactgataatgatacaaatggggtggaatttaattgtgttaatgatgttgacactgatagtgacattgatagtgatactgaagatataaaagttaa |
36467544 |
T |
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| Q |
234 |
tagcagcaacgatgttcgtactgatggagatgcagacggtgtggaattaaaccatggtaatggtgtttgcaatgagcaagggaaaaagaactttgatggt |
333 |
Q |
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| T |
36467545 |
tagcagcaacgatgttcgtactgatggagatgcagacggtgtggaattaaaccatggtaatggtgtttgcaatgagcaagggaaaaagaactttgatggt |
36467644 |
T |
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| Q |
334 |
tacaaatg |
341 |
Q |
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|||||||| |
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| T |
36467645 |
tacaaatg |
36467652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 28718324 - 28718419
Alignment:
| Q |
34 |
gtaggttataattttaaaatgtctacatatagtgaagcaacatcgccttttgatgtatatagtgatacagataaggtggaatttaatagtgttaat |
129 |
Q |
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| T |
28718324 |
gtaggttataattttaaaatgtctacatacaatgaagcaatgtcgcctcttgatgtatatagtgatatagatgaagtggtatttaatagcgttaat |
28718419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 206 - 319
Target Start/End: Original strand, 28738738 - 28738851
Alignment:
| Q |
206 |
atagtgatactgaagatataaaagttaatagcagcaacgatgttcgtactgatggagatgcagacggtgtggaattaaaccatggtaatggtgtttgcaa |
305 |
Q |
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|||||||||||||||||||| |||| |||| | || | ||||||||| |||| |||||| || | || ||||||| |||||||||||||||||||||| |
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| T |
28738738 |
atagtgatactgaagatatagaagtcaataacgacatcaatgttcgtagtgatagagatgtaggcagtatggaattcaaccatggtaatggtgtttgcag |
28738837 |
T |
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| Q |
306 |
tgagcaagggaaaa |
319 |
Q |
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| T |
28738838 |
tgagcaagggaaaa |
28738851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 227 - 312
Target Start/End: Original strand, 28718448 - 28718533
Alignment:
| Q |
227 |
aagttaatagcagcaacgatgttcgtactgatggagatgcagacggtgtggaattaaaccatggtaatggtgtttgcaatgagcaa |
312 |
Q |
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| T |
28718448 |
aagttaatagcggcaacgatgttcgtactgatagagatacaggcgatatgaaattcaaccatggtaatggtgtttgcagtgagcaa |
28718533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 28738653 - 28738716
Alignment:
| Q |
38 |
gttataattttaaaatgtcta-catatagtgaagcaacatcgccttttgatgtatatagtgata |
100 |
Q |
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|||||||||| ||||||||| |||| |||||||||| |||||| |||||||||||||||||| |
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| T |
28738653 |
gttataatttaaaaatgtctggcatacagtgaagcaatgtcgcctcttgatgtatatagtgata |
28738716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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