View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14634_low_2 (Length: 317)
Name: NF14634_low_2
Description: NF14634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14634_low_2 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 15 - 302
Target Start/End: Original strand, 4940358 - 4940645
Alignment:
| Q |
15 |
aaagaaaatgtgttcctatcattgctttaatttcaattgcgtattgatatgggtttagttatttattacaaaaaagttcaaaaatcataaatggactttg |
114 |
Q |
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| T |
4940358 |
aaagaaaatgtgttcctatcattgctttaatttcaattgcgtattgatatgggtttagttatttattacaaaaaagttcaaaaatcataaatggactttg |
4940457 |
T |
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| Q |
115 |
tttgattaaaagtggtaccaggaacaaatggtatcaactttgaagatagatacagccactaattttgtattatctgcctaaaaacattaacctaattata |
214 |
Q |
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| T |
4940458 |
tttgattaaaagtggtaccaggaacaaatggtatcaactttgaagatagatacagccactaattttgtattatctgcctacaaacattaacctaatcata |
4940557 |
T |
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| Q |
215 |
gacttttccctctaccataacctatgattattgtcactttgctttatataggtcatcgacacttacaaacaatacttcaacatctgtg |
302 |
Q |
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| T |
4940558 |
gacttttccctctaccataacctatgattattgtcactttgctttatataggtcatcgacacttacaaacaatacttcaacatgtgtg |
4940645 |
T |
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Target: scaffold0019 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 4220 - 4171
Alignment:
| Q |
228 |
accataacctatgattattgtcactttgctttatataggtcatcgacactt |
278 |
Q |
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| T |
4220 |
accataacctatgcttattgtcac-ttgctttgtataggtcatcggcactt |
4171 |
T |
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