View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14634_low_3 (Length: 263)
Name: NF14634_low_3
Description: NF14634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14634_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 43484820 - 43485051
Alignment:
| Q |
16 |
ataatggatcaaagcattaaagataattgataaaatcattgcaagagacaacgatggatcaagaaattttagatcacggaaacaagattatagactataa |
115 |
Q |
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| T |
43484820 |
ataatggatcaaagcattaaagataattgataaaatcattgcaagagacagcgacggatcaagaaattttagctcacggaaacaagattatagactataa |
43484919 |
T |
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| Q |
116 |
tagttacataaaattaacgaaagaaatttagagaaagaaaatgtgaaatcactctaaattcatcactaaatttaatgaccaaagaattaaagagaaattt |
215 |
Q |
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| T |
43484920 |
tagttatataaaattaacggaagaaatttagagaaagaaaacgtgaaatcactctaaattcatcactaaatttagtgaccaaagaattaaaaagaaattt |
43485019 |
T |
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| Q |
216 |
catttttctatactaacttcaccgataatttt |
247 |
Q |
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| T |
43485020 |
catttttctatactaacttcaccgataatttt |
43485051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 20088436 - 20088496
Alignment:
| Q |
167 |
ctctaaattcatcactaaatttaatgaccaaagaattaaagagaaatttcatttttctata |
227 |
Q |
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|||||| | ||||||||||||| ||||||||||||| | ||||||||| |||||| |||| |
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| T |
20088436 |
ctctaattccatcactaaattttgtgaccaaagaatttatgagaaattttatttttttata |
20088496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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