View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14634_low_4 (Length: 239)

Name: NF14634_low_4
Description: NF14634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14634_low_4
NF14634_low_4
[»] chr4 (2 HSPs)
chr4 (1-223)||(106653-106875)
chr4 (148-222)||(166927-167001)
[»] scaffold0013 (1 HSPs)
scaffold0013 (142-222)||(88603-88683)
[»] chr7 (1 HSPs)
chr7 (124-222)||(13055199-13055297)
[»] chr3 (1 HSPs)
chr3 (158-222)||(12134959-12135023)
[»] chr8 (5 HSPs)
chr8 (156-220)||(5656684-5656748)
chr8 (156-220)||(5718299-5718363)
chr8 (156-220)||(5686152-5686216)
chr8 (147-219)||(5638228-5638300)
chr8 (147-219)||(5651426-5651498)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 106653 - 106875
Alignment:
Q  1 ttgttacatataaccaggaccaccatcaacggatcaagacaccacatttccatcaaaaccttaaaacattttatttgtttcaaaactcaaacttcacact 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  106653 ttgtaacatataaccaggaccaccatcaacggatcaagacaccacatttccatcaaaaccttaaaacattttatttgtttcaaaactcaaacttcacact 106752  T
Q  101 taccatctataaaattaataaagacctattattaatttttgttttgttttatttatggcaggaaatcacaggagtattcatgaaaaattgtatgttgcat 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  106753 taccatctataaaactaataaagacctattattaatttttgttttgttttatttatggcaggaaatcacaggagtattcatgaaaaattgtatgttgcat 106852  T
Q  201 tacccaatgtatagagatattta 223  Q
    |||||||||||||||||||||||    
T  106853 tacccaatgtatagagatattta 106875  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 166927 - 167001
Alignment:
Q  148 tttatttatggcaggaaatcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagagatattt 222  Q
    ||||||||| |||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  166927 tttatttattgcaggatatctcaggagcattcatgaaaaattgtatgttgcattacccaatgtatagagatattt 167001  T

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Target: scaffold0013 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 88683 - 88603
Alignment:
Q  142 ttttgttttatttatggcaggaaatcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagagatattt 222  Q
    |||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  88683 ttttattttatttatcgcaggaactcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagaaatattt 88603  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 13055199 - 13055297
Alignment:
Q  124 acctattattaatttttgttttgttttatttatggcaggaaatcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagagatattt 222  Q
    ||||||||||||||||| | |||| |||||||| | ||| |||||||||||||||| | ||||||||||||||||||||  ||||||||||||||||||    
T  13055199 acctattattaatttttctcttgtcttatttattgtagggaatcacaggagtattcttcaaaaattgtatgttgcattatacaatgtatagagatattt 13055297  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 12135023 - 12134959
Alignment:
Q  158 gcaggaaatcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagagatattt 222  Q
    ||||||||||||||||  | || |||||||||||||||||||||| |||||||||||| ||||||    
T  12135023 gcaggaaatcacaggatcaatcgtgaaaaattgtatgttgcattatccaatgtatagaaatattt 12134959  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 5656748 - 5656684
Alignment:
Q  156 tggcaggaaatcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagagatat 220  Q
    ||||||||| |||| ||||||||||||||||| || ||| |||||||| | ||||||||||||||    
T  5656748 tggcaggaactcacgggagtattcatgaaaaactgcatgctgcattacgctatgtatagagatat 5656684  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 5718363 - 5718299
Alignment:
Q  156 tggcaggaaatcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagagatat 220  Q
    ||||||||| |||||| ||||||||||||||| || ||| |||||||| |||||| |||||||||    
T  5718363 tggcaggaactcacagcagtattcatgaaaaactgcatgctgcattacgcaatgtttagagatat 5718299  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 5686216 - 5686152
Alignment:
Q  156 tggcaggaaatcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagagatat 220  Q
    ||||||||| |||||| ||||||||||||||| || ||| |||||||| | |||| |||||||||    
T  5686216 tggcaggaactcacagcagtattcatgaaaaactgcatgctgcattacgccatgtttagagatat 5686152  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 5638300 - 5638228
Alignment:
Q  147 ttttatttatggcaggaaatcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagagata 219  Q
    |||| ||| ||||||||| | ||||| | || | |||||| ||| ||||||||||| ||||||||||||||||    
T  5638300 ttttttttttggcaggaactgacaggggcatccttgaaaacttgcatgttgcattatccaatgtatagagata 5638228  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 5651498 - 5651426
Alignment:
Q  147 ttttatttatggcaggaaatcacaggagtattcatgaaaaattgtatgttgcattacccaatgtatagagata 219  Q
    |||| ||| ||||||||| | ||||| | || | |||||| ||| ||||||||||| ||||||||||||||||    
T  5651498 ttttttttttggcaggaactgacaggggcatccttgaaaacttgcatgttgcattatccaatgtatagagata 5651426  T

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