View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14635_high_20 (Length: 233)
Name: NF14635_high_20
Description: NF14635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14635_high_20 |
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| [»] chr5 (11 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 9301957 - 9302186
Alignment:
| Q |
1 |
aacatggtacttgttgcttgccatcttaactgctcttttaatttgttcnnnnnnnncttctaagatagttgaaaagctcgaagtttgtgtgatgttacca |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9301957 |
aacatggtaattgttgcttgccatcttaactgctcttttaatttgttcttttttttcttctaagatagttgaaaagctagaagtttgtgtgatgttacca |
9302056 |
T |
|
| Q |
101 |
agttcttgactccctatttatataagaggtattcatcatattgattggttgataattattaaattgatataataatgaaattaataaaatatgcagcact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9302057 |
agttcttgactccctatttatataagaggtattcatcatattgattggttgataattgttaaattgatataataatgaaattaataaaatatgcagcact |
9302156 |
T |
|
| Q |
201 |
tgttagtgctgatggtgtagagcatgtggtgcc |
233 |
Q |
| |
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|||||| |||||||||||||||||||||||| |
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| T |
9302157 |
tgttag---tgatggtgtagagcatgtggtgcc |
9302186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 57 - 233
Target Start/End: Complemental strand, 9367459 - 9367286
Alignment:
| Q |
57 |
cttctaagatagttgaaaagctcgaagtttgtgtgatgttaccaagttcttgactccctatttatataagaggtattcatcatattgattggttgataat |
156 |
Q |
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||||||||||| || ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9367459 |
cttctaagataattataaagctctaagtttgtgtgatgttaccaagttcttgactctctatttatataagaggtattcatcatattgattggttgagaat |
9367360 |
T |
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| Q |
157 |
tattaaattgatataataatgaaattaataaaatatgcagcacttgttagtgctgatggtgtagagcatgtggtgcc |
233 |
Q |
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| T |
9367359 |
tattaaattcatatgataatgaaattaataaaatatgaagcacttgt---cggtgatggtgtagagcatgtggtgcc |
9367286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 73 - 233
Target Start/End: Original strand, 9352174 - 9352331
Alignment:
| Q |
73 |
aaagctcgaagtttgtgtgatgttaccaagttcttgactccctatttatataagaggtattcatcatattgattggttgataattattaaattgatataa |
172 |
Q |
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||||||| | ||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| | |
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| T |
9352174 |
aaagctcaatgtttgtgtgatgttaccaagttcttgaatctctatttatataagaggtattcgtcatattgattggttgataattattaaattcatatga |
9352273 |
T |
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| Q |
173 |
taatgaaattaataaaatatgcagcacttgttagtgctgatggtgtagagcatgtggtgcc |
233 |
Q |
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| T |
9352274 |
taatgaaattaataaaataaacagcacttgttag---tgatggtgtagagcatgtggtgcc |
9352331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 58 - 233
Target Start/End: Original strand, 9332434 - 9332607
Alignment:
| Q |
58 |
ttctaagatagttgaaaagctcgaagtttgtgtgatgttaccaagttcttgactccctatttatataagaggtattcatcatattgattggttgataatt |
157 |
Q |
| |
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|||||||||| ||| ||||||| | ||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9332434 |
ttctaagataattgtaaagctcaatgtttgtgtgatgttaccaagttcttgatgctctatttatataagaggtattcgtcatattgattggttgataatt |
9332533 |
T |
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| Q |
158 |
attaaattgatataata-atgaaattaataaaatatgcagcacttgttagtgctgatggtgtagagcatgtggtgcc |
233 |
Q |
| |
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||| |||| |||||||| | || || ||||||||||||| |||||| || ||||||| |||||||||||||||| |
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| T |
9332534 |
atttaattcatataatataataagttgataaaatatgcagtacttgt---tgatgatggtttagagcatgtggtgcc |
9332607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 57 - 229
Target Start/End: Original strand, 9305632 - 9305800
Alignment:
| Q |
57 |
cttctaagatagttgaaaagctcgaagtttgtgtgatgttaccaagttcttgactccctatttatataagaggtattcatcatattgattggttgataat |
156 |
Q |
| |
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||||||||||| ||| |||||| | |||||||| ||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
9305632 |
cttctaagataattgtaaagctaaatgtttgtgttatgttaccaaggtcttgactc--tatttatataagatgtattcatcatattgattggtggataat |
9305729 |
T |
|
| Q |
157 |
tattaaattgatataataatga-aattaataaaatatgcagcacttgttagtgctgatggtgtagagcatgtgg |
229 |
Q |
| |
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||||||||| |||| ||||||| |||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
9305730 |
tattaaattcatatgataatgatttttaataaaatatacagcacttgttag---tgatggtgtagagcatgtgg |
9305800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 73 - 233
Target Start/End: Original strand, 9288662 - 9288815
Alignment:
| Q |
73 |
aaagctcgaagtttgtgtgatgttaccaagttcttgactccctatttatataagaggtattcatcatattgattggttgataattattaaattgatataa |
172 |
Q |
| |
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||||||||| ||||| |||| ||||||||| |||||||| || |||||||||||| || |||| || |||||||||||||||||| || |||||| |
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| T |
9288662 |
aaagctcgatgtttgcttgatattaccaagtgcttgactctctctttatataagagctaatcatgat----attggttgataattattatgttcatataa |
9288757 |
T |
|
| Q |
173 |
taatgaaattaataaaatatgcagcacttgttagtgctgatggtgtagagcatgtggtgcc |
233 |
Q |
| |
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||| |||||||||||||| ||||| |||||| ||||||||||||||||||||||| |
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| T |
9288758 |
taacaaaattaataaaatagacagcagttgtta---aggatggtgtagagcatgtggtgcc |
9288815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 9293191 - 9293258
Alignment:
| Q |
57 |
cttctaagatagttgaaaagctcgaagtttgtgtgatgttaccaagttcttgactccctatttatata |
124 |
Q |
| |
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||||||||||| ||| |||||| | |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9293191 |
cttctaagataattgtaaagcttaatgtttgtgtgatgttaccaagttcttgactctctatttatata |
9293258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 9356225 - 9356093
Alignment:
| Q |
73 |
aaagctcgaagtttgtgtgatgttaccaagttcttgactccctatttatataagaggtattcatcatattgattggttgataattattaaattgatataa |
172 |
Q |
| |
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||||||| | ||||||||| ||||||||||| | |||||| || |||||||||||| |||||| || |||||||| | |||||||| || |||||| |
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| T |
9356225 |
aaagctcaatgtttgtgtggtgttaccaagtgcctgactctctctttatataagagccattcatgattgatattggttgctgattattaatttcatataa |
9356126 |
T |
|
| Q |
173 |
taatgaaattaataaaatatgcagcacttgtta |
205 |
Q |
| |
|
||| |||||| |||||||| | | ||||||||| |
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| T |
9356125 |
taaggaaattgataaaataggtatcacttgtta |
9356093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 191
Target Start/End: Complemental strand, 9309832 - 9309701
Alignment:
| Q |
58 |
ttctaagatagttgaaaagctcgaagtttgtgtgatgttaccaagttcttgactccctatttatataagaggtattcatcatattgattggttgataatt |
157 |
Q |
| |
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|||||||| | ||| ||||||| | ||||||||| |||| |||||||| |||||| || ||||||||||| |||||| || |||||||| | ||| |
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| T |
9309832 |
ttctaagaaaattgtaaagctcaatgtttgtgtggtgttcccaagttcctgactctct--ttatataagagccattcatgatcgatattggttgctgatt |
9309735 |
T |
|
| Q |
158 |
attaaattgatataataatgaaattaataaaata |
191 |
Q |
| |
|
||||| || ||||||||| |||||||||||||| |
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| T |
9309734 |
attaatttcatataataagtaaattaataaaata |
9309701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 191
Target Start/End: Complemental strand, 9373366 - 9373252
Alignment:
| Q |
73 |
aaagctcgaagtttgtgtgatgttaccaagttcttgactccctatttatataagaggtattcatcatattgattggttgataattattaaattgatataa |
172 |
Q |
| |
|
||||||||| |||||| |||| ||||||||| || ||||| || |||||||||||| || |||| || |||||||||||||||| || || ||||| |
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| T |
9373366 |
aaagctcgatgtttgtttgatattaccaagtgctagactctctctttatataagagctaatcatgat----attggttgataattatcaagttcatatag |
9373271 |
T |
|
| Q |
173 |
taatgaaattaataaaata |
191 |
Q |
| |
|
|| ||||| ||||||||| |
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| T |
9373270 |
aaaggaaatgaataaaata |
9373252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 9297801 - 9297856
Alignment:
| Q |
57 |
cttctaagatagttgaaaagctcgaagtttgtgtgatgttaccaagttcttgactc |
112 |
Q |
| |
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||||||||||| ||| ||||||| | ||||||||||||||| ||||| |||||||| |
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| T |
9297801 |
cttctaagataattgtaaagctcaatgtttgtgtgatgttaacaagtgcttgactc |
9297856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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