View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14635_high_9 (Length: 416)
Name: NF14635_high_9
Description: NF14635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14635_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 45723883 - 45723705
Alignment:
| Q |
9 |
gtgagaagaatataatgtttatattaagcttgatcgttatcgatacaagaaactatttgggttctgaatatattagcattgacaacgatacatgattgtt |
108 |
Q |
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| T |
45723883 |
gtgagaagaatataatgtttatattaagcttgatcgttatcgatacaagaaactatttgggttctgaatatattagcattgacaacgatacatgattgtt |
45723784 |
T |
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| Q |
109 |
catgtttctgcctatagtccttcgtt--------ggatgagttgccacaatcaggaccacctctaaagctcttacttag |
179 |
Q |
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| T |
45723783 |
catgtttctgcctatagtccttcgttggatacttggatgagttgccacaatcaggaccacctctaaagctcttacttag |
45723705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 251 - 402
Target Start/End: Complemental strand, 45723633 - 45723482
Alignment:
| Q |
251 |
aagattgggatcactggctatgaatttaattccgatcttataattcagtttgacaaattagtaatctttaaacctaaataattgacaatcagggtaggtt |
350 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45723633 |
aagattgggatcactgactatgaatttaattccgatcttataattcagtttgacaaattagtaatctttaaacctaaataattgacaatcagggtaggtt |
45723534 |
T |
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| Q |
351 |
gagctagtgtctcataacatcacaagtcacactataatgaaccaaaattttg |
402 |
Q |
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| T |
45723533 |
gagctagtgtctcataacatcacaagtcacactataatgaaccaaaattttg |
45723482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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