View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14635_low_1 (Length: 729)

Name: NF14635_low_1
Description: NF14635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14635_low_1
NF14635_low_1
[»] chr3 (5 HSPs)
chr3 (365-717)||(3751713-3752065)
chr3 (162-321)||(3752065-3752224)
chr3 (19-138)||(3752296-3752415)
chr3 (410-449)||(10366644-10366683)
chr3 (410-449)||(24569102-24569141)
[»] chr4 (4 HSPs)
chr4 (217-338)||(25511341-25511462)
chr4 (72-131)||(25511169-25511227)
chr4 (410-449)||(42517646-42517685)
chr4 (410-449)||(51625157-51625196)
[»] chr1 (4 HSPs)
chr1 (217-338)||(31985212-31985333)
chr1 (388-451)||(6160462-6160532)
chr1 (410-449)||(26093468-26093507)
chr1 (72-131)||(31985447-31985505)
[»] chr7 (5 HSPs)
chr7 (88-127)||(26604316-26604355)
chr7 (410-449)||(5524461-5524500)
chr7 (410-449)||(28103814-28103853)
chr7 (410-449)||(44180286-44180325)
chr7 (410-451)||(16904460-16904501)
[»] scaffold0294 (1 HSPs)
scaffold0294 (410-449)||(17109-17148)
[»] chr6 (3 HSPs)
chr6 (410-449)||(31894211-31894250)
chr6 (411-449)||(23142742-23142780)
chr6 (410-451)||(1063602-1063643)
[»] chr5 (3 HSPs)
chr5 (410-449)||(2232073-2232112)
chr5 (410-449)||(40530224-40530263)
chr5 (410-451)||(38508185-38508226)
[»] chr2 (3 HSPs)
chr2 (410-449)||(26607968-26608007)
chr2 (420-475)||(45169249-45169304)
chr2 (629-671)||(7485935-7485977)
[»] chr8 (1 HSPs)
chr8 (629-678)||(16599087-16599136)


Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 365 - 717
Target Start/End: Complemental strand, 3752065 - 3751713
Alignment:
Q  365 atccgagttttaaaactatgatataataagagtattttagtaaatattttaccaatgaaatcaacacaattagtcattttcttaaaacttgtgcaaagct 464  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||||||| |||||||||    
T  3752065 atccgagttttaaaactatgatataataagagtatttcagtaaatattttactaataaaatcaacacaattagtcatttttttaaaacttatgcaaagct 3751966  T
Q  465 caaatgaaacacgtacagtgagtcaactgaagtattgtttatggaactattagagatactaccttcaatcctttttaattgttgcatttgcaagaaaatt 564  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3751965 caaatgaaacacgtatagtgagtcaactggagtattgtttatggaactattagagatactactttcaatcctttttaattgttgcatttgcaagaaaatt 3751866  T
Q  565 ttattcttatttaattatagttttaaaagttcaattaatcttaaaagttcaagataaccaagaaaattttctaaatattttgcatatctctctaattgtt 664  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3751865 ttattcttatttaattgtagttttaaaagttcaattaatcttaaaagttcaagataaccaagaaaattttctaaatattttgcatatctctctaattgtt 3751766  T
Q  665 ttaagtcagtttccaattagtctttcacttttttccttttgaatattcttgga 717  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3751765 ttaagtcagtttccaattagtctttcacttttttccttttgaatattcatgga 3751713  T

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Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 162 - 321
Target Start/End: Complemental strand, 3752224 - 3752065
Alignment:
Q  162 agtgtgatgcaatgcaactctcccgaactttgatttttgcagccagcgtccatgtaaaaaaccggttcggttgaaaagccaccgagtccccggttcgaca 261  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3752224 agtgcgatgcaatgcaactctcccgaactttgatttttgcagccagcgtccatgtaaaaaaccggtttggttgaaaagccaccgagtccccggttcgaca 3752125  T
Q  262 gaaaaccggccggttcatactggttcatcacggttcaattgcatgctctatccaactata 321  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  3752124 gaaaaccggccggttcatactggttcgtcacggttcaattgcatgccctatccaactata 3752065  T

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Target: chr3; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 3752415 - 3752296
Alignment:
Q  19 acaaagtgttttcagaattcagattgannnnnnncttgtcaaatgtattaggctctcctacttcttctatgagatttgtcttttctcttccatcttcata 118  Q
    |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3752415 acaaagtgttttcagaattcagattgatttttttcttgtcaaatgtattaggctctcctacttcttctatgagatttgtcttttctcttccatcttcatc 3752316  T
Q  119 gatgaatgaagtgttgcttg 138  Q
    ||||||||||||||||||||    
T  3752315 gatgaatgaagtgttgcttg 3752296  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 10366683 - 10366644
Alignment:
Q  410 attttaccaatgaaatcaacacaattagtcattttcttaa 449  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  10366683 attttaccattgaaatcaacacaattaatcattttcttaa 10366644  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 24569141 - 24569102
Alignment:
Q  410 attttaccaatgaaatcaacacaattagtcattttcttaa 449  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  24569141 attttaccattgaaatcaacacaattaatcattttcttaa 24569102  T

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Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 217 - 338
Target Start/End: Original strand, 25511341 - 25511462
Alignment:
Q  217 aaaaaaccggttcggttgaaaagccaccgagtccccggttcgacagaaaaccggccggttcatactggttcatcacggttcaattgcatgctctatccaa 316  Q
    |||||||||||  | || |||| |||||||||| |||||| ||||| |||||||||||||||||| ||||| |||||||||||||||||   | ||||||    
T  25511341 aaaaaaccggtctgatttaaaaaccaccgagtcaccggtttgacaggaaaccggccggttcataccggttcgtcacggttcaattgcatatccgatccaa 25511440  T
Q  317 ctataagctcgaaccagtcatg 338  Q
    ||||  ||||||||| ||||||    
T  25511441 ctatctgctcgaaccggtcatg 25511462  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 25511169 - 25511227
Alignment:
Q  72 tctcctacttcttctatgagatttgtcttttctcttccatcttcatagatgaatgaagtg 131  Q
    |||||| |||||| | |||||||||| ||||||||||||||||||||| ||||| |||||    
T  25511169 tctcctccttcttatctgagatttgt-ttttctcttccatcttcatagttgaataaagtg 25511227  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 42517685 - 42517646
Alignment:
Q  410 attttaccaatgaaatcaacacaattagtcattttcttaa 449  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  42517685 attttaccattgaaatcaacacaattaatcattttcttaa 42517646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 449
Target Start/End: Original strand, 51625157 - 51625196
Alignment:
Q  410 attttaccaatgaaatcaacacaattagtcattttcttaa 449  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  51625157 attttaccattgaaatcaacacaattaatcattttcttaa 51625196  T

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Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 217 - 338
Target Start/End: Complemental strand, 31985333 - 31985212
Alignment:
Q  217 aaaaaaccggttcggttgaaaagccaccgagtccccggttcgacagaaaaccggccggttcatactggttcatcacggttcaattgcatgctctatccaa 316  Q
    |||||||||||  | || |||| |||||||||| |||||| ||||| |||||||||||||||||| ||||| ||||||||||| |||||   | ||||||    
T  31985333 aaaaaaccggtctgatttaaaaaccaccgagtcaccggtttgacaggaaaccggccggttcataccggttcgtcacggttcaactgcatatccgatccaa 31985234  T
Q  317 ctataagctcgaaccagtcatg 338  Q
    ||||  ||||||||| ||||||    
T  31985233 ctatctgctcgaaccggtcatg 31985212  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 388 - 451
Target Start/End: Complemental strand, 6160532 - 6160462
Alignment:
Q  388 taataagagtattttagtaaata-------ttttaccaatgaaatcaacacaattagtcattttcttaaaa 451  Q
    |||||||||||||||||||||||       ||||| || ||||||||||||||||| ||||||||||||||    
T  6160532 taataagagtattttagtaaataatactaattttatcattgaaatcaacacaattaatcattttcttaaaa 6160462  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 449
Target Start/End: Original strand, 26093468 - 26093507
Alignment:
Q  410 attttaccaatgaaatcaacacaattagtcattttcttaa 449  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  26093468 attttaccattgaaatcaacacaattaatcattttcttaa 26093507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 31985505 - 31985447
Alignment:
Q  72 tctcctacttcttctatgagatttgtcttttctcttccatcttcatagatgaatgaagtg 131  Q
    |||||| |||||| | |||||||||| ||||||||||||||||||||| ||||| |||||    
T  31985505 tctcctccttcttatctgagatttgt-ttttctcttccatcttcatagttgaataaagtg 31985447  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 88 - 127
Target Start/End: Original strand, 26604316 - 26604355
Alignment:
Q  88 tgagatttgtcttttctcttccatcttcatagatgaatga 127  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  26604316 tgagatttgtcttttctcttccatcttcatagttgaatga 26604355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 449
Target Start/End: Original strand, 5524461 - 5524500
Alignment:
Q  410 attttaccaatgaaatcaacacaattagtcattttcttaa 449  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  5524461 attttaccattgaaatcaacacaattaatcattttcttaa 5524500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 449
Target Start/End: Original strand, 28103814 - 28103853
Alignment:
Q  410 attttaccaatgaaatcaacacaattagtcattttcttaa 449  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  28103814 attttaccattgaaatcaacacaattaatcattttcttaa 28103853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 449
Target Start/End: Original strand, 44180286 - 44180325
Alignment:
Q  410 attttaccaatgaaatcaacacaattagtcattttcttaa 449  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  44180286 attttaccattgaaatcaacacaattaatcattttcttaa 44180325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 410 - 451
Target Start/End: Original strand, 16904460 - 16904501
Alignment:
Q  410 attttaccaatgaaatcaacacaattagtcattttcttaaaa 451  Q
    ||||||| | ||||||||||||||||| ||||||||||||||    
T  16904460 attttactattgaaatcaacacaattaatcattttcttaaaa 16904501  T

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Target: scaffold0294 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 449
Target Start/End: Original strand, 17109 - 17148
Alignment:
Q  410 attttaccaatgaaatcaacacaattagtcattttcttaa 449  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  17109 attttaccattgaaatcaacacaattaatcattttcttaa 17148  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 31894250 - 31894211
Alignment:
Q  410 attttaccaatgaaatcaacacaattagtcattttcttaa 449  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  31894250 attttaccattgaaatcaacacaattaatcattttcttaa 31894211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 411 - 449
Target Start/End: Original strand, 23142742 - 23142780
Alignment:
Q  411 ttttaccaatgaaatcaacacaattagtcattttcttaa 449  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  23142742 ttttaccattgaaatcaacacaattaatcattttcttaa 23142780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 410 - 451
Target Start/End: Complemental strand, 1063643 - 1063602
Alignment:
Q  410 attttaccaatgaaatcaacacaattagtcattttcttaaaa 451  Q
    |||||| || ||||||||||||||||| ||||||||||||||    
T  1063643 attttatcattgaaatcaacacaattaatcattttcttaaaa 1063602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 2232112 - 2232073
Alignment:
Q  410 attttaccaatgaaatcaacacaattagtcattttcttaa 449  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  2232112 attttaccattgaaatcaacacaattattcattttcttaa 2232073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 40530263 - 40530224
Alignment:
Q  410 attttaccaatgaaatcaacacaattagtcattttcttaa 449  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  40530263 attttaccattgaaatcaacacaattaatcattttcttaa 40530224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 410 - 451
Target Start/End: Complemental strand, 38508226 - 38508185
Alignment:
Q  410 attttaccaatgaaatcaacacaattagtcattttcttaaaa 451  Q
    ||||||||| |||||| |||||||||| ||||||||||||||    
T  38508226 attttaccattgaaattaacacaattaatcattttcttaaaa 38508185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 449
Target Start/End: Complemental strand, 26608007 - 26607968
Alignment:
Q  410 attttaccaatgaaatcaacacaattagtcattttcttaa 449  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  26608007 attttaccattgaaatcaacacaattaatcattttcttaa 26607968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 475
Target Start/End: Original strand, 45169249 - 45169304
Alignment:
Q  420 tgaaatcaacacaattagtcattttcttaaaacttgtgcaaagctcaaatgaaaca 475  Q
    ||||||||||||||||| | ||||||||||||  | ||||||||| ||||||||||    
T  45169249 tgaaatcaacacaattaattattttcttaaaaagtatgcaaagcttaaatgaaaca 45169304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 629 - 671
Target Start/End: Original strand, 7485935 - 7485977
Alignment:
Q  629 aattttctaaatattttgcatatctctctaattgttttaagtc 671  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||    
T  7485935 aattttctaaatattgtgcatatctctttaattattttaagtc 7485977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 678
Target Start/End: Original strand, 16599087 - 16599136
Alignment:
Q  629 aattttctaaatattttgcatatctctctaattgttttaagtcagtttcc 678  Q
    ||||||||||||||| |||| |||||| ||||| |||||||||| |||||    
T  16599087 aattttctaaatattgtgcacatctctttaattattttaagtcaatttcc 16599136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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