View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14635_low_10 (Length: 415)

Name: NF14635_low_10
Description: NF14635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14635_low_10
NF14635_low_10
[»] chr4 (5 HSPs)
chr4 (14-395)||(2878727-2879108)
chr4 (14-159)||(2895797-2895942)
chr4 (14-163)||(2888427-2888576)
chr4 (301-391)||(2896044-2896134)
chr4 (302-391)||(2888233-2888322)
[»] chr2 (7 HSPs)
chr2 (14-72)||(44232532-44232590)
chr2 (14-141)||(44209500-44209627)
chr2 (305-391)||(44209788-44209874)
chr2 (20-75)||(43455647-43455702)
chr2 (14-141)||(44221714-44221841)
chr2 (320-391)||(44221998-44222069)
chr2 (320-391)||(44232824-44232895)
[»] chr8 (1 HSPs)
chr8 (31-95)||(4502991-4503055)
[»] chr7 (6 HSPs)
chr7 (29-77)||(39536651-39536699)
chr7 (29-87)||(39545968-39546026)
chr7 (29-78)||(1083275-1083324)
chr7 (29-78)||(39340177-39340226)
chr7 (28-76)||(39354999-39355047)
chr7 (29-96)||(39562774-39562841)
[»] chr1 (2 HSPs)
chr1 (29-153)||(2147390-2147514)
chr1 (29-99)||(2159261-2159331)
[»] chr3 (1 HSPs)
chr3 (32-147)||(49774608-49774723)


Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 14 - 395
Target Start/End: Complemental strand, 2879108 - 2878727
Alignment:
Q  14 gcatagggtaaggcagaatacattccagcagctctttctctataaaaaacagttctttcaacagctactactggttgtactgaggctgaattttggaccc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2879108 gcatagggtaaggcagaatacattccagcagctctttctctataaaaaacagttctttcaacagctactactggttgtactgaggctgaattttggaccc 2879009  T
Q  114 caatgaagaaaacagcagtgtacattgagcccatggcattagacaggtctagtcctcttgtgctggaatccacgaaaggcatcacaattcaagtggaaat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2879008 caatgaagaaaacagcagtgtacattgagcccatggcattagacaggtctagtcctcttgtgctggaatccacgaaaggcatcacaattcaagtggaaat 2878909  T
Q  214 gaaatatcaactaaacggtgtttggataaatattttgattaagtgcaaattcaataagctattgtcatatttatagattttggaagttttcacttactat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2878908 gaaatatcaactaaacggtgtttggataaatattttgattaagtgcaaattcaataagctattgtcatatttatagattttggaagttttcacttactat 2878809  T
Q  314 ttgcgtccgaggtcccaaaacattgttccaaacatcaatgctatgaaagtagcaaagtaaaacctaacagcagtgtataacg 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2878808 ttgcgtccgaggtcccaaaacattgttccaaacatcaatgctatgaaagtagcaaagtaaaacctaacagcagtgtataacg 2878727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 2895797 - 2895942
Alignment:
Q  14 gcatagggtaaggcagaatacattccagcagctctttctctataaaaaacagttctttcaacagctactactggttgtactgaggctgaattttggaccc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||| || |||||||| || | |||||| |||||||    
T  2895797 gcatagggtaaggcagaatacattccagcagctctttctctatagaagacagatctttcaacagctaccacgggttgtacagacgatgaattctggaccc 2895896  T
Q  114 caatgaagaaaacagcagtgtacattgagcccatggcattagacag 159  Q
    ||| ||||| ||||||||| ||||| || || | ||||||| ||||    
T  2895897 caaggaagagaacagcagtatacatcgaaccgagggcattaaacag 2895942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 2888576 - 2888427
Alignment:
Q  14 gcatagggtaaggcagaatacattccagcagctctttctctataaaaaacagttctttcaacagctactactggttgtactgaggctgaattttggaccc 113  Q
    ||||| ||||||||||||||||| |||||||||||||||||||| || |||| ||||||||| ||||| ||||||||||| |  | |||||| |||||||    
T  2888576 gcataaggtaaggcagaatacatcccagcagctctttctctatagaacacagatctttcaactgctaccactggttgtacagctgatgaattctggaccc 2888477  T
Q  114 caatgaagaaaacagcagtgtacattgagcccatggcattagacaggtct 163  Q
    ||| ||||| ||||||||| ||||| || || | ||||||| ||||||||    
T  2888476 caaggaagagaacagcagtatacatcgaaccgagggcattaaacaggtct 2888427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 301 - 391
Target Start/End: Original strand, 2896044 - 2896134
Alignment:
Q  301 tttcacttactatttgcgtccgaggtcccaaaacattgttccaaacatcaatgctatgaaagtagcaaagtaaaacctaacagcagtgtat 391  Q
    ||||||||||||||| | ||| |||| ||| ||||||||||||||||||||||||||||||||||  ||| ||||||| ||||||||||||    
T  2896044 tttcacttactatttccttccaaggttccagaacattgttccaaacatcaatgctatgaaagtagtgaagaaaaacctcacagcagtgtat 2896134  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 391
Target Start/End: Complemental strand, 2888322 - 2888233
Alignment:
Q  302 ttcacttactatttgcgtccgaggtcccaaaacattgttccaaacatcaatgctatgaaagtagcaaagtaaaacctaacagcagtgtat 391  Q
    |||||||||||||| | ||| || |||||||| |||||||||||||||||  ||||||||  ||  ||| ||||||| |||| |||||||    
T  2888322 ttcacttactatttccttccaagatcccaaaatattgttccaaacatcaagcctatgaaaacagtgaagaaaaacctcacagaagtgtat 2888233  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 44232532 - 44232590
Alignment:
Q  14 gcatagggtaaggcagaatacattccagcagctctttctctataaaaaacagttctttc 72  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||    
T  44232532 gcatagggtaaggcagagtacattccagcagctttttctctataaaatacagttctttc 44232590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 44209500 - 44209627
Alignment:
Q  14 gcatagggtaaggcagaatacattccagcagctctttctctataaaaaacagttctttcaacagctactactggttgtactgaggctgaattttggaccc 113  Q
    ||||||||||||||||| ||||||||||||||| ||||||||| ||| ||||||||||| || || || || || || || || |  |||||||| || |    
T  44209500 gcatagggtaaggcagagtacattccagcagctttttctctattaaatacagttctttccactgcaaccaccggctgcacagaagaagaattttgcactc 44209599  T
Q  114 caatgaagaaaacagcagtgtacattga 141  Q
    ||| ||||| |||||| || ||||||||    
T  44209600 caaggaagagaacagcggtatacattga 44209627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 305 - 391
Target Start/End: Original strand, 44209788 - 44209874
Alignment:
Q  305 acttactatttgcgtccgaggtcccaaaacattgttccaaacatcaatgctatgaaagtagcaaagtaaaacctaacagcagtgtat 391  Q
    ||||||| |||||  ||||||||||| |||||||||||||||||||| |||||||| || |  ||| ||||||| ||||||||||||    
T  44209788 acttactgtttgccaccgaggtcccagaacattgttccaaacatcaaggctatgaatgtcgtgaagaaaaacctcacagcagtgtat 44209874  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 43455647 - 43455702
Alignment:
Q  20 ggtaaggcagaatacattccagcagctctttctctataaaaaacagttctttcaac 75  Q
    ||||| |||||||||||||||||||||||||||| ||| || ||||||||||||||    
T  43455647 ggtaaagcagaatacattccagcagctctttctcgatagaatacagttctttcaac 43455702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 44221714 - 44221841
Alignment:
Q  14 gcatagggtaaggcagaatacattccagcagctctttctctataaaaaacagttctttcaacagctactactggttgtactgaggctgaattttggaccc 113  Q
    ||||| ||||||||||||||||||||||||||  |||||| |||||| ||||| |||||||| || || || || || || || |  |||||||| || |    
T  44221714 gcatatggtaaggcagaatacattccagcagccttttctcgataaaatacagtcctttcaactgcaaccaccggctgcacagaagaagaattttgtactc 44221813  T
Q  114 caatgaagaaaacagcagtgtacattga 141  Q
    ||| ||||| |||||| || ||||||||    
T  44221814 caaggaagagaacagcggtatacattga 44221841  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 320 - 391
Target Start/End: Original strand, 44221998 - 44222069
Alignment:
Q  320 ccgaggtcccaaaacattgttccaaacatcaatgctatgaaagtagcaaagtaaaacctaacagcagtgtat 391  Q
    ||||||||||| ||||||||||||||||||||  ||||||| ||||  ||| ||||||| ||||||||||||    
T  44221998 ccgaggtcccagaacattgttccaaacatcaagcctatgaaggtagtgaagaaaaacctcacagcagtgtat 44222069  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 320 - 391
Target Start/End: Original strand, 44232824 - 44232895
Alignment:
Q  320 ccgaggtcccaaaacattgttccaaacatcaatgctatgaaagtagcaaagtaaaacctaacagcagtgtat 391  Q
    ||||||||||| ||||||||||||||||||||  ||||||| ||||  ||| ||||||| ||||||||||||    
T  44232824 ccgaggtcccagaacattgttccaaacatcaagcctatgaatgtagtgaagaaaaacctcacagcagtgtat 44232895  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 4503055 - 4502991
Alignment:
Q  31 atacattccagcagctctttctctataaaaaacagttctttcaacagctactactggttgtactg 95  Q
    ||||||||||||||||||||||||||| || || ||||||||||  ||||| |||||||| ||||    
T  4503055 atacattccagcagctctttctctatagaacactgttctttcaatggctacaactggttgaactg 4502991  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 39536651 - 39536699
Alignment:
Q  29 gaatacattccagcagctctttctctataaaaaacagttctttcaacag 77  Q
    |||||||||||||| ||||||||||||||||| || |||||||||||||    
T  39536651 gaatacattccagccgctctttctctataaaagactgttctttcaacag 39536699  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 39545968 - 39546026
Alignment:
Q  29 gaatacattccagcagctctttctctataaaaaacagttctttcaacagctactactgg 87  Q
    ||||||||||| || |||||||||| |||||| || ||||||||||||||||| |||||    
T  39545968 gaatacattccggctgctctttctcgataaaagaccgttctttcaacagctaccactgg 39546026  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 1083275 - 1083324
Alignment:
Q  29 gaatacattccagcagctctttctctataaaaaacagttctttcaacagc 78  Q
    ||||||||||| || ||||||||||||||||| || ||||||||||||||    
T  1083275 gaatacattccggctgctctttctctataaaagacggttctttcaacagc 1083324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 39340226 - 39340177
Alignment:
Q  29 gaatacattccagcagctctttctctataaaaaacagttctttcaacagc 78  Q
    ||||||||||| || ||||||||||||||||| || ||||||||||||||    
T  39340226 gaatacattccggccgctctttctctataaaagaccgttctttcaacagc 39340177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 39355047 - 39354999
Alignment:
Q  28 agaatacattccagcagctctttctctataaaaaacagttctttcaaca 76  Q
    |||||||||||| || ||||||||||||||||| || ||||||||||||    
T  39355047 agaatacattccggctgctctttctctataaaagaccgttctttcaaca 39354999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 39562774 - 39562841
Alignment:
Q  29 gaatacattccagcagctctttctctataaaaaacagttctttcaacagctactactggttgtactga 96  Q
    ||||||||||| || ||||||||||||||||| || |||||||| ||||| || ||||| || |||||    
T  39562774 gaatacattccggctgctctttctctataaaagaccgttctttcgacagcaaccactggctgcactga 39562841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 2147390 - 2147514
Alignment:
Q  29 gaatacattccagcagctctttctctataaaaaacagttctttcaacagctactactggttgtactgaggctgaattttggaccccaatgaagaaaacag 128  Q
    ||||||||||| |||||||||||||| || || || ||||| ||||  ||||||| ||||||||| |||||   ||||   ||||| ||||||  |||||    
T  2147390 gaatacattcctgcagctctttctctgtagaagactgttctctcaattgctactattggttgtaccgaggcaccatttacaacccctatgaaggtaacag 2147489  T
Q  129 cagtgtacattgagcccatggcatt 153  Q
    |||  |||||||| ||||| |||||    
T  2147490 cagcatacattgaccccattgcatt 2147514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 2159261 - 2159331
Alignment:
Q  29 gaatacattccagcagctctttctctataaaaaacagttctttcaacagctactactggttgtactgaggc 99  Q
    |||||||||||||||||||||||||| || || || ||||| ||||| |||| ||| || || ||||||||    
T  2159261 gaatacattccagcagctctttctctgtagaagactgttctctcaactgctattacaggctgcactgaggc 2159331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 49774723 - 49774608
Alignment:
Q  32 tacattccagcagctctttctctataaaaaacagttctttcaacagctactactggttgtactgaggctgaattttggaccccaatgaagaaaacagcag 131  Q
    ||||||||||||||  |||||||||| ||||| ||||| ||||  ||||| |||||||| || || |  | |||||| |||||||||||||  || ||||    
T  49774723 tacattccagcagccttttctctatagaaaactgttctctcaatggctacaactggttgcaccgatgtagcattttgtaccccaatgaagagcactgcag 49774624  T
Q  132 tgtacattgagcccat 147  Q
     |||||| || |||||    
T  49774623 cgtacatggaccccat 49774608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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