View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14635_low_13 (Length: 392)
Name: NF14635_low_13
Description: NF14635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14635_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 3 - 327
Target Start/End: Complemental strand, 10843542 - 10843231
Alignment:
| Q |
3 |
gaagatatctctctgaatgttcctcttttaacagaacatgaaggaaaccaaatttctggtagcggtcccaacgacaatattcttaccacttgtttcctta |
102 |
Q |
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| T |
10843542 |
gaagatatctctctgaatgttcctcttttaacagaacatgaaggaaaccaaatttctggtagcggtcccaacgacaatattcttaccacttctttcctta |
10843443 |
T |
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| Q |
103 |
aaacttgtttcaatggtctcaatgctttaacaggtaaaccttattaaccctaattgttttgttttgtaaaatgcaagctgtttttggataaaatccaagt |
202 |
Q |
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| T |
10843442 |
aaacttgtttcaatggtctcaatgctttaacaggt-aaccttattaaccctagttgttttgttttgtaaaatgcaagctgtttttgg---------aaat |
10843353 |
T |
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| Q |
203 |
tagattattttttgttgttgatgttgttggaattaattgacagttaatagatttgattagcctaaaactagagatttgtgatgataattatgttggacca |
302 |
Q |
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| T |
10843352 |
tag---aatttttgttgttgattttgttggaattaattgacagttaatggattagattagcctaaaaccagagatttgtgatgataattatgttggtcca |
10843256 |
T |
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| Q |
303 |
caaattaataaaagatatataatgt |
327 |
Q |
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| T |
10843255 |
caaattaataaaagatatataatgt |
10843231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 96 - 325
Target Start/End: Complemental strand, 2700891 - 2700656
Alignment:
| Q |
96 |
ttccttaaaacttgtttcaatggtctcaatgctttaacaggtaaaccttattaaccctaattgttttg------ttttgtaaaatgca-agctgtttttg |
188 |
Q |
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| T |
2700891 |
ttccttaaaacttgtttcaatggtctcaatgctttatcaggt-aaccttattaactttagttgttttgtgagtatgttttacaaaacatagatgtttttc |
2700793 |
T |
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| Q |
189 |
gataaaatccaagttagattatttt-ttgttgttgatgttgttggaattaattgacagttaatagatttgattagcctaaaactagagatttgtgatgat |
287 |
Q |
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||||||| || ||||||| |||| ||||| ||| ||||||| | ||||||| || ||| |||||||| |||||||||||| | || ||||||||| | |
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| T |
2700792 |
aataaaatttaaattagatttttttgttgttattgttgttgttatatttaattggcaattattagatttgtttagcctaaaaccatagttttgtgatgct |
2700693 |
T |
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| Q |
288 |
aattatgttggaccacaaattaataaaagatatataat |
325 |
Q |
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| T |
2700692 |
aattatgttggtcc-ttaattagtaaaagatatataat |
2700656 |
T |
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