View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14635_low_14 (Length: 355)
Name: NF14635_low_14
Description: NF14635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14635_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 31534094 - 31533759
Alignment:
| Q |
1 |
atacccaggtggaaagttctttgatcctcttggtttggccagtgatcctgaagagaaagaaagacttcaattggcagagattaagcattctcgtttggcc |
100 |
Q |
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| T |
31534094 |
atacccaggtggaaagttctttgatcctcttggtttggccagtgatcctgaagagaaagaaagacttcaattggcagagattaagcattctcgtttggcc |
31533995 |
T |
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| Q |
101 |
atggtggttttcctcatctttgcaattcaagctgctgttacaggaaaaggacctattggtttcattgctaccttcaaccagtgacataacatgtgaagcc |
200 |
Q |
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| T |
31533994 |
atggtggttttcctcatctttgcaattcaagctgctgttacaggaaaaggacctattggtttcattgctaccttcaaccagtgacataacatgtgaagcc |
31533895 |
T |
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| Q |
201 |
cttttatctcaatcttcaatactatgtgtcactaattactccatctttaaatttagttaatttatttttcttctgcagaagttaaaaactgctatgtata |
300 |
Q |
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| T |
31533894 |
cttttatctcaatcttcaatactatgtgtcactaattactccatctttaaatttagttaatttatttttcttctgcagaagttaaaaactgctatgtata |
31533795 |
T |
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| Q |
301 |
ccatttatgtatgtttgtactctgttgcatgcttct |
336 |
Q |
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| T |
31533794 |
ccatttatgtatgtttgtactctgttgcatgcttct |
31533759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 4671727 - 4671650
Alignment:
| Q |
1 |
atacccaggtggaaagttctttgatcctcttggtttggccagtgatcctgaagagaaagaaagacttcaattggcaga |
78 |
Q |
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||||||||||||||| |||||||| || |||||||| || |||||| ||| |||||| || ||||||||||||||| |
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| T |
4671727 |
atacccaggtggaaaattctttgacccacttggtttagcatctgatccagaaaagaaagcaacacttcaattggcaga |
4671650 |
T |
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