View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14635_low_16 (Length: 346)
Name: NF14635_low_16
Description: NF14635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14635_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 26803812 - 26804048
Alignment:
| Q |
15 |
cataggtgtgtgagagagagaggggtagggacttacttgtcatcatgaactggaactccccattcttcatcatgataagcaatatagataggatctgttt |
114 |
Q |
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| T |
26803812 |
cataggtgtgtgagagagagaggggtagggacttacttgtcatcatgaactggaactccccattcttcatcatgataagcaatatagataggatctgttt |
26803911 |
T |
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| Q |
115 |
atcaaaagagacattaaagttaacacttgttgctttaagataaaacaaaattgcactaagtatcaaaaagggtacatatgaatttgtattaaaatatgag |
214 |
Q |
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| T |
26803912 |
atcaaaagagacattaaagttaacacttgttgctttaagataaaacaaaattgcactaaatatcaaaaagggtacctatgaatttgtattaaaatatgag |
26804011 |
T |
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| Q |
215 |
tttagtttttataaacctataataaattaaactatca |
251 |
Q |
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| T |
26804012 |
tttagtttttataaacctataataaattaaactatca |
26804048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 250 - 331
Target Start/End: Original strand, 26804105 - 26804184
Alignment:
| Q |
250 |
catttttaatattcagacaattataattgattgactttctaataattttcttttagaattataaatcttttaaaatatttat |
331 |
Q |
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| T |
26804105 |
catttttaatattcagacaattataattgattgactttctaataattttcttttagaat--taaatcttttaaaatatttat |
26804184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 45 - 127
Target Start/End: Original strand, 18416999 - 18417082
Alignment:
| Q |
45 |
acttacttgtcatcatgaactggaactccccattcttcatcatgataagcaatatagataggatctgttt-atcaaaagagaca |
127 |
Q |
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| T |
18416999 |
acttacttgtcatcatgaactggaactccccattcctcatcatgataagcaatatagatgggatctatttaataaaaagagaca |
18417082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 54546811 - 54546851
Alignment:
| Q |
48 |
tacttgtcatcatgaactggaactccccattcttcatcatg |
88 |
Q |
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| T |
54546811 |
tacttgtcgtcatgtactggaactccccattcttcatcatg |
54546851 |
T |
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