View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14635_low_19 (Length: 301)
Name: NF14635_low_19
Description: NF14635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14635_low_19 |
 | |
|
| [»] chr3 (32 HSPs) |
| |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
| [»] scaffold0002 (4 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 32)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 10433851 - 10433551
Alignment:
| Q |
1 |
tcattgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttct |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10433851 |
tcattgatggaaaacccggaagcatggtgattataacaacgcgccaacaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttct |
10433752 |
T |
|
| Q |
101 |
atcaaatgaagattgttggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10433751 |
atcaaatgaagattgttggtctttactctcgaagcatgcattgggcagtgatgagtttcacctcaatacaaacacaacccttgaagaaataggcagggag |
10433652 |
T |
|
| Q |
201 |
attgcaagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaattttgaaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10433651 |
attgcaagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaattttgaaca |
10433552 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
|
| |
|
|
| T |
10433551 |
g |
10433551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 10363605 - 10363305
Alignment:
| Q |
1 |
tcattgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10363605 |
tcattgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacataaattagatcttct |
10363506 |
T |
|
| Q |
101 |
atcaaatgaagattgttggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaag |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||| |||| | |||||||||| || | |||||||||||||||||||||||||||||||||| |
|
|
| T |
10363505 |
atcaaatgaagattgttggactttactctcaaagcatgcactgggaaatgatgagtttcacaatagtacaaacacaacccttgaagaaataggcaggaag |
10363406 |
T |
|
| Q |
201 |
attgcaagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaattttgaaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10363405 |
attgcaagaaagtgtggaggattgccaattgctgctaaaacactaggaggacttctccgttcaaaggtagacataacagagtggacttcaattttgaaca |
10363306 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
|
| |
|
|
| T |
10363305 |
g |
10363305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 9839123 - 9839423
Alignment:
| Q |
1 |
tcattgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttct |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
9839123 |
tcattgatggaaaacccggaagcatggtgattataacaacgcgccaacaaaaagttgctgaggtggcacacacatttccaatacataaattagatcttct |
9839222 |
T |
|
| Q |
101 |
atcaaatgaagattgttggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| | | |||||||| ||||||||||||||||||||||| |
|
|
| T |
9839223 |
atcaaatgaagattgttggtctttactctcaaagcatgcattgggaagtgatgagtttcaccatagttcaaacacagcccttgaagaaataggcaggaag |
9839322 |
T |
|
| Q |
201 |
attgcaagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaattttgaaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
9839323 |
attgcaagaaagtgtggaggattgccaatagctgctaaaacaataggaggacttctacgttcaaaggtagacataagtgagtggacttcaattttgaaca |
9839422 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
|
| |
|
|
| T |
9839423 |
g |
9839423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 9850001 - 9850301
Alignment:
| Q |
1 |
tcattgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttct |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
9850001 |
tcattgatggaaaacccggaagcatggtgattataacaacacgccaacaaaaagttgctgaggtggcacacacatttccaatacataaattagatcttct |
9850100 |
T |
|
| Q |
101 |
atcaaatgaagattgttggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| | | |||||||| ||||||||||||||||||||||| |
|
|
| T |
9850101 |
atcaaatgaagattgttggtctttactctcaaagcatgcattgggaagtgatgagtttcaccatagttcaaacacagcccttgaagaaataggcaggaag |
9850200 |
T |
|
| Q |
201 |
attgcaagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaattttgaaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
9850201 |
attgcaagaaagtgtggaggattgccaatagctgctaaaacaataggaggacttctacgttcaaaggtagacataagtgagtggacttcaattttgaaca |
9850300 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
|
| |
|
|
| T |
9850301 |
g |
9850301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 10663788 - 10664088
Alignment:
| Q |
1 |
tcattgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10663788 |
tcattgatggaaaacctggaagcatggtgattataacaacgcgcgaacaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttct |
10663887 |
T |
|
| Q |
101 |
atcaaatgaagattgttggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaag |
200 |
Q |
| |
|
||||||||||||||||||||| ||||| || |||||||||||||| || || |||||| ||| | | ||||||||||||||||||||| |||||||||| |
|
|
| T |
10663888 |
atcaaatgaagattgttggtccttactttcaaagcatgcattgggaagcgacgagtttcaccatagttcaaacacaacccttgaagaaacaggcaggaag |
10663987 |
T |
|
| Q |
201 |
attgcaagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaattttgaaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10663988 |
attgcaagaaagtgtggaggattgccaatagctgctaaaacattaggaggacttctacgttcaaaggtagacataacagagtggacttcaattttgaaca |
10664087 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
|
| |
|
|
| T |
10664088 |
g |
10664088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 300
Target Start/End: Original strand, 11769502 - 11769795
Alignment:
| Q |
7 |
atggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
11769502 |
atggaaaacctggaagcatggtgattataacaacacgccaacgaaaagttgctgaggtggcacacacatttcctatacatgaattaaaacttctatcaaa |
11769601 |
T |
|
| Q |
107 |
tgaagattgttggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaagattgca |
206 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||| ||| | ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11769602 |
tgaagattgttggtctttactctcaaagcatgcattgggaagtgatgagtttcaccatagtacaaacacaacccttgaagaaataggaaggaagattgca |
11769701 |
T |
|
| Q |
207 |
agaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaattttgaaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
11769702 |
agaaagtgtggaggattgccaattgccgctataacaataggagggcttctacgttcaaaggtagatataacagagtggactgcaattttaaaca |
11769795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 10089052 - 10089352
Alignment:
| Q |
1 |
tcattgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10089052 |
tcattgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacataaattagaacttct |
10089151 |
T |
|
| Q |
101 |
atcaaatgaagattgttggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaag |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||| |||| ||||| || | |||||||||||||||||||| ||| ||| ||||| |
|
|
| T |
10089152 |
gtcaaatgaagattgttggactttactctcaaagcatgcattgggcaatgataagtttccccatagtacaaacacaacccttgaagcaattggccggaag |
10089251 |
T |
|
| Q |
201 |
attgcaagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaattttgaaca |
300 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10089252 |
attgcaaggaagtgtggaggattgccaatagctgccaaaacactaggaggacttctacgttcaaaggtagaaataacagagtggacttcaattttgaaca |
10089351 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
|
| |
|
|
| T |
10089352 |
g |
10089352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 10195935 - 10196235
Alignment:
| Q |
1 |
tcattgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10195935 |
tcattgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacataaattagaacttct |
10196034 |
T |
|
| Q |
101 |
atcaaatgaagattgttggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaag |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||| |||| ||||| || | |||||||||||||||||||| ||| ||| |||| |
|
|
| T |
10196035 |
gtcaaatgaagattgttggactttactctcaaagcatgcattgggcaatgataagtttccccatagtacaaacacaacccttgaagcaattggcctgaag |
10196134 |
T |
|
| Q |
201 |
attgcaagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaattttgaaca |
300 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10196135 |
attgcaaggaagtgtggaggattgccaatagctgctaaaacactaggaggacttctacgttcaaaggtagaaataacagagtggacttcaattttgaaca |
10196234 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
|
| |
|
|
| T |
10196235 |
g |
10196235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 10527620 - 10527920
Alignment:
| Q |
1 |
tcattgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttct |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| | |||| |||||||||||||||||||| ||||||||||||||||||| || ||||| | |
|
|
| T |
10527620 |
tcattgatggaaaacctggaagtatggtgattataacaacccaccaacgaaaagttgctgaggtggcacgcacatttcctatacataaactaaaactttt |
10527719 |
T |
|
| Q |
101 |
atcaaatgaagattgttggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| || | |||||||||||||||||||||||||||||| ||| |
|
|
| T |
10527720 |
atcaaatgaagattgttggtctttactctcaaagcatgcattgggaagtgatgagtttcacaatagtacaaacacaacccttgaagaaataggcagaaag |
10527819 |
T |
|
| Q |
201 |
attgcaagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaattttgaaca |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10527820 |
attgcaagaaagtatggaggattgccaatagctgctaaaacaataggaggacttctacgttcaaaggtagacataacagagtggacttcaattttgaaca |
10527919 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
|
| |
|
|
| T |
10527920 |
g |
10527920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 10375652 - 10375352
Alignment:
| Q |
1 |
tcattgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttct |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||| ||| |||||||||||||||| || || ||||||| |
|
|
| T |
10375652 |
tcattgatggaaaacccggaagcatggtgattataacaacgcgccaacgaaaagttgctaaggtagcatgcacatttcctatacatgaactaaaacttct |
10375553 |
T |
|
| Q |
101 |
atcaaatgaagattgttggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaag |
200 |
Q |
| |
|
||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||| ||| | | |||||||||||||||||||||||||||||||| |
|
|
| T |
10375552 |
atcgaatgaagactgttggtctttactctcaaagcatgcattgggtagtgatgagtttcaccatagttcaaacacaacccttgaagaaataggcaggaag |
10375453 |
T |
|
| Q |
201 |
attgcaagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaattttgaaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| || |||||||||| |
|
|
| T |
10375452 |
attgcaagaaagtgtggaggattgccaatagctgctaaaacaataggaggacttctacgttcaaaggtagatgtaacagagtggacatccattttgaaca |
10375353 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
|
| |
|
|
| T |
10375352 |
g |
10375352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 10127190 - 10127489
Alignment:
| Q |
1 |
tcattgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttct |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| || || || | || |
|
|
| T |
10127190 |
tcattaatggaaaacctggaagcatggtgattataacaacgcgccaacaaaaagttgctgaggtggcacgcacatttcctatacatgaactaaaagtact |
10127289 |
T |
|
| Q |
101 |
atcaaatgaagattgttggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaag |
200 |
Q |
| |
|
|||| |||||||||||||||||||||| || |||||||||||||| ||||||||| || | | |||||||| ||| |||||||||||| |||||||||| |
|
|
| T |
10127290 |
atcagatgaagattgttggtctttactatcaaagcatgcattgggaagtgatgagattcagcataatacaaatacagcccttgaagaaacaggcaggaag |
10127389 |
T |
|
| Q |
201 |
attgcaagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaattttgaaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10127390 |
attgcaagaaagtgtggaggattgccaatagctgctaaaacactaggaggacttctacgttcaaaggtagacataacagagtggacttcaattttgaaca |
10127489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 4 - 301
Target Start/End: Original strand, 10260963 - 10261260
Alignment:
| Q |
4 |
ttgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||| || || |||||||||| |
|
|
| T |
10260963 |
ttgatggaaaacctggaagcatggtgattataacaacgcggcaacaaaaagttgctgaggtggcatgcacatttcctatacatgaactaaaacttctatc |
10261062 |
T |
|
| Q |
104 |
aaatgaagattgttggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaagatt |
203 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||| || | | |||||||| ||| |||||||||||| ||||||||||||| |
|
|
| T |
10261063 |
gaatgaagactgttggtctttactctcaaagcatgcattgggcagtgatgagattcagcataatacaaatacagcccttgaagaaacaggcaggaagatt |
10261162 |
T |
|
| Q |
204 |
gcaagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaattttgaacag |
301 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||| | ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10261163 |
gcaagaaagtgtggaggattgccaatagctgccaaaacacttggaggacttctacgttcaaaggtagacataacagagtggacttcaattttgaacag |
10261260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 10032265 - 10032565
Alignment:
| Q |
1 |
tcattgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||| || || ||||||| |
|
|
| T |
10032265 |
tcattgatggaaaacctggaagcatggtgattataacaacacgccaacgaaaagttgctgaggtggcatgcacatttcctatacatgaactaaaacttct |
10032364 |
T |
|
| Q |
101 |
atcaaatgaagattgttggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| || | | ||| |||| ||| |||||||||||| |||||||||| |
|
|
| T |
10032365 |
atcaaatgaagattgttggtctttactctcaaagcatgcattgggcagtgatgagattcagcataatgcaaatacagcccttgaagaaacaggcaggaag |
10032464 |
T |
|
| Q |
201 |
attgcaagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaattttgaaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||| | ||||| ||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10032465 |
attgcaagaaagtgtggaggattgccaatagctgccaaaacacttggagggcttctacgttcaaaggtagacataacagagtggacttcaattttgaaca |
10032564 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
|
| |
|
|
| T |
10032565 |
g |
10032565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 10184504 - 10184801
Alignment:
| Q |
1 |
tcattgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || || ||||||| |
|
|
| T |
10184504 |
tcattgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacatgaactaaaacttct |
10184603 |
T |
|
| Q |
101 |
atcaaatgaagattgttggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaag |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||| | || ||||||| ||| | || |||| ||||| |||||||||||||||||||| |
|
|
| T |
10184604 |
atcaaatgaagattgttggtcgttactctcaaagcatgcattgagagttggtgagtttcaccgtactagaaactcaacctttgaagaaataggcaggaag |
10184703 |
T |
|
| Q |
201 |
attgcaagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaattttgaa |
298 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||| ||||||||||||| ||||||||| |||||||||| |
|
|
| T |
10184704 |
attgcaagaaagtgtggaggattgccaatagctgctaaaacaataggaggacttctaggttcgaaggtagatataatagagtggacaacaattttgaa |
10184801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 10077531 - 10077828
Alignment:
| Q |
1 |
tcattgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttct |
100 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||| |||||| |||||||||| |||||||||| ||||||||||||||||| |||||||| | | |
|
|
| T |
10077531 |
tcattgatggaaagcatggaagcatggtgattataacaacacgccaacaaaaagttgcagaggtggcacgcacatttcctatacatatattagaaccttt |
10077630 |
T |
|
| Q |
101 |
atcaaatgaagattgttggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaag |
200 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||||||||||| | || ||||||| ||| | ||||||| |||||||||||||||||||||||||| |
|
|
| T |
10077631 |
atcaaatgaagattgttggtatttactttcaaagcatgcattgagagttggtgagtttcaccatagtacaaactcaacccttgaagaaataggcaggaag |
10077730 |
T |
|
| Q |
201 |
attgcaagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaattttgaa |
298 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
10077731 |
attgcaagaaagtgtggaggattgccaatagctgctaaaacaataggaggacttctaggttcaaaggtagatataatagagtggacaacaattttgaa |
10077828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 10580863 - 10581157
Alignment:
| Q |
1 |
tcattgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttct |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| | || ||||||||| ||| || ||||||| ||||||| ||| |
|
|
| T |
10580863 |
tcattaatggaaaacctggaagcatggtgattataacaacgcgccaacaaaaagttacaaagatggcacacatgtttgctgtacataatttagaacctct |
10580962 |
T |
|
| Q |
101 |
atcaaatgaagattgttggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||| |||||||||||| ||| | |||||| ||| ||||||||||||| ||||||||| |
|
|
| T |
10580963 |
atcaaatgaagattgttggtctttactctcaaactatgcattgggaagtgatgagtttcaccatagtacaaatacagcccttgaagaaattggcaggaag |
10581062 |
T |
|
| Q |
201 |
attgcaagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaatttt |
295 |
Q |
| |
|
|||||||||| |||||| ||||||||||| |||||||||||| ||||||||||| | | |||||||||||| |||||| |||||||||||||||| |
|
|
| T |
10581063 |
attgcaagaaggtgtgggggattgccaatagctgctaaaacactaggaggacttctcccttcaaaggtagacataacaaagtggacttcaatttt |
10581157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 184 - 301
Target Start/End: Original strand, 10672127 - 10672244
Alignment:
| Q |
184 |
aagaaataggcaggaagattgcaagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtg |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||| ||||| |
|
|
| T |
10672127 |
aagaaataggcaggaagattgcaagaaagtgtggaggattgccaatagctgctaaaacaataggaggacttctacgttcaaaggtagacataactgagtg |
10672226 |
T |
|
| Q |
284 |
gacttcaattttgaacag |
301 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
10672227 |
gacttcaattttgaacag |
10672244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 5 - 293
Target Start/End: Complemental strand, 11781785 - 11781497
Alignment:
| Q |
5 |
tgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatca |
104 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| ||| |||||||| |||||| |
|
|
| T |
11781785 |
tgatggaaaacctggaagttcggtgattataacaactcgccaacaaaaagttgcagaggtggcacacacatttcctattcatgcattagaacctctatct |
11781686 |
T |
|
| Q |
105 |
aatgaagattgttggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaagattg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| || ||| | || | | | | | || | || ||| ||| ||||| || ||||||||||||| |
|
|
| T |
11781685 |
catgaagattgttggtctttactctcgaaacatgcatttggtagtaaggactgtgatcgccgtaaatacccaaacctagaagagattggcaggaagattg |
11781586 |
T |
|
| Q |
205 |
caagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaatt |
293 |
Q |
| |
|
| | ||| ||||| ||||||||||| ||||| || ||| | ||||||||| | ||||||||||||| | || ||||||||||||||| |
|
|
| T |
11781585 |
ctaaaaaatgtggtggattgccaatagctgccaagacacttggaggacttatgcgttcaaaggtagttgaaaaggagtggacttcaatt |
11781497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 5 - 270
Target Start/End: Original strand, 10517751 - 10518016
Alignment:
| Q |
5 |
tgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatca |
104 |
Q |
| |
|
|||||||||||| || || |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| || ||||||||| |||||| |
|
|
| T |
10517751 |
tgatggaaaacccgggagttcggtgattataacaacgcgccaacaaaaagttgcagaggtggcacacacatttcctattcaggaattagaacctctatct |
10517850 |
T |
|
| Q |
105 |
aatgaagattgttggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaagattg |
204 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| || ||| | || | | | || || | || ||| |||||||| || ||||||||||||| |
|
|
| T |
10517851 |
catgaagattgttggtctttactctcaaaacatgcatttggtagtaaggacagtgatcacagtaaatacccaaatcttgaagagattggcaggaagattg |
10517950 |
T |
|
| Q |
205 |
caagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtag |
270 |
Q |
| |
|
| | ||| ||||| || || ||||| ||||| |||||| | ||||||||| | ||||||||||||| |
|
|
| T |
10517951 |
ctaaaaaatgtggtgggttaccaatagctgccaaaacacttggaggacttatgcgttcaaaggtag |
10518016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 10500862 - 10500977
Alignment:
| Q |
27 |
gtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaatgaagattgttggtctttac |
126 |
Q |
| |
|
||||| |||||||| ||| || |||||||||| ||||| ||| |||||||||||| ||||||||||||| |||||| |||| ||||||||| |||||| |
|
|
| T |
10500862 |
gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac |
10500961 |
T |
|
| Q |
127 |
tctcgaagcatgcatt |
142 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
10500962 |
tctcgaagcatgcatt |
10500977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 265
Target Start/End: Complemental strand, 11148626 - 11148397
Alignment:
| Q |
36 |
acaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaatgaagattgttggtctttactctcgaagc |
135 |
Q |
| |
|
||||| |||||| |||||||||| ||||| ||||| ||||||||||| |||||||||||| || |||| ||||||||| |||||||||||||| |||| |
|
|
| T |
11148626 |
acaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcataaattagaagttttatctaatgaagatacatggtctttactctcaaagc |
11148527 |
T |
|
| Q |
136 |
atgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaagattgcaagaaagtgtggaggattgccaattgctgc |
235 |
Q |
| |
|
||||||| || ||||| | |||| ||||| | | ||| ||| |||| ||| || || ||||||||||||||||||| || ||||| || ||||| |
|
|
| T |
11148526 |
atgcatttggaagtgaaaacttttgtgacaataaatgctcaaacctagaagcaattggtagaaagattgcaagaaagtgtgttgggttgcccatagctgc |
11148427 |
T |
|
| Q |
236 |
taaaacaataggaggacttttacgttcaaa |
265 |
Q |
| |
|
|||||| | |||||| | || |||||||| |
|
|
| T |
11148426 |
aaaaacacttggaggagtattgcgttcaaa |
11148397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 36 - 151
Target Start/End: Original strand, 8861583 - 8861698
Alignment:
| Q |
36 |
acaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaatgaagattgttggtctttactctcgaagc |
135 |
Q |
| |
|
||||| |||||| |||||||||| ||||| ||||| ||||||||||| |||||||||||| || |||| ||||||||| |||||||||||||| |||| |
|
|
| T |
8861583 |
acaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcataaattagaagttttatctaatgaagatacatggtctttactctcaaagc |
8861682 |
T |
|
| Q |
136 |
atgcattgggcagtga |
151 |
Q |
| |
|
||||||| || ||||| |
|
|
| T |
8861683 |
atgcatttggaagtga |
8861698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 36 - 151
Target Start/End: Complemental strand, 11130798 - 11130683
Alignment:
| Q |
36 |
acaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaatgaagattgttggtctttactctcgaagc |
135 |
Q |
| |
|
||||| |||||| |||||||||| ||||| ||||| ||||||||||| |||||||||||| || |||| ||||||||| |||||||||||||| |||| |
|
|
| T |
11130798 |
acaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcataaattagaagttttatctaatgaagatacatggtctttactctcaaagc |
11130699 |
T |
|
| Q |
136 |
atgcattgggcagtga |
151 |
Q |
| |
|
||||||| || ||||| |
|
|
| T |
11130698 |
atgcatttggaagtga |
11130683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 36 - 151
Target Start/End: Complemental strand, 11159789 - 11159674
Alignment:
| Q |
36 |
acaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaatgaagattgttggtctttactctcgaagc |
135 |
Q |
| |
|
||||| |||||| |||||||||| ||||| ||||| ||||||||||| |||||||||||| || |||| ||||||||| |||||||||||||| |||| |
|
|
| T |
11159789 |
acaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcataaattagaagttttatctaatgaagatacatggtctttactctcaaagc |
11159690 |
T |
|
| Q |
136 |
atgcattgggcagtga |
151 |
Q |
| |
|
||||||| || ||||| |
|
|
| T |
11159689 |
atgcatttggaagtga |
11159674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 13344368 - 13344643
Alignment:
| Q |
18 |
ggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaatgaagattgtt |
117 |
Q |
| |
|
||||| |||||||| || ||||| |||||| |||||||||| ||||| |||||||| |||||||| || ||| |||| | ||||||| |||| || |||| |
|
|
| T |
13344368 |
ggaagtatggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgtt |
13344467 |
T |
|
| Q |
118 |
ggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaagattgcaagaaagtgtgg |
217 |
Q |
| |
|
|||| ||||| || ||||||||||| || ||||| || | | | || ||| || |||||||| || || |||||||| | ||||||||| |
|
|
| T |
13344468 |
ggtcgttactttcaaagcatgcattcggaagtgaagaccgtcgaggtagaaagtacccaaatctagaagaaattggtagaaagattgccaaaaagtgtgg |
13344567 |
T |
|
| Q |
218 |
aggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaatt |
293 |
Q |
| |
|
|||||||| || |||||||||||| | |||||| |||| ||||||||||||||| || |||||||||| ||||| |
|
|
| T |
13344568 |
tggattgcccatagctgctaaaacactcggaggaattttgcgttcaaaggtagatgcaaaagagtggactgcaatt |
13344643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 13171310 - 13171443
Alignment:
| Q |
18 |
ggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaatgaagattgtt |
117 |
Q |
| |
|
||||| |||||||| || ||||| |||||| |||||||||| ||||| |||||||| |||||||| || ||| |||| | ||||||| |||| || |||| |
|
|
| T |
13171310 |
ggaagtatggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgtt |
13171409 |
T |
|
| Q |
118 |
ggtctttactctcgaagcatgcattgggcagtga |
151 |
Q |
| |
|
|||| ||||| || ||||||||||| || ||||| |
|
|
| T |
13171410 |
ggtcgttactttcaaagcatgcattcggaagtga |
13171443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 293
Target Start/End: Original strand, 13333191 - 13333458
Alignment:
| Q |
26 |
ggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaatgaagattgttggtcttta |
125 |
Q |
| |
|
|||||| || ||||| |||||| |||||||||| ||||| |||||||| |||||||| || ||| |||| | ||||||| |||| || |||||||| ||| |
|
|
| T |
13333191 |
ggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgtta |
13333290 |
T |
|
| Q |
126 |
ctctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaagattgcaagaaagtgtggaggattgc |
225 |
Q |
| |
|
|| || ||||||||||| || ||||| || | | | || ||| || |||||||| || || |||||||| | ||||||||| ||||||| |
|
|
| T |
13333291 |
ctttcaaagcatgcattcggaagtgaagaccgtcgaggtagaaagtacccaaatctagaagaaattggtagaaagattgccaaaaagtgtggtggattgc |
13333390 |
T |
|
| Q |
226 |
caattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaatt |
293 |
Q |
| |
|
| || |||||||||||| | |||||| |||| ||||||||||||||| || |||||||||| ||||| |
|
|
| T |
13333391 |
ccatagctgctaaaacactcggaggaattttgcgttcaaaggtagatgcaaaagagtggactgcaatt |
13333458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 13161267 - 13161392
Alignment:
| Q |
26 |
ggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaatgaagattgttggtcttta |
125 |
Q |
| |
|
|||||| || ||||| |||||| |||||||||| ||||| |||||||| |||||||| || ||| |||| | ||||||| |||| || |||||||| ||| |
|
|
| T |
13161267 |
ggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgtta |
13161366 |
T |
|
| Q |
126 |
ctctcgaagcatgcattgggcagtga |
151 |
Q |
| |
|
|| || ||||||||||| || ||||| |
|
|
| T |
13161367 |
ctttcaaagcatgcatttggaagtga |
13161392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 13289952 - 13290077
Alignment:
| Q |
26 |
ggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaatgaagattgttggtcttta |
125 |
Q |
| |
|
|||||| || ||||| |||||| |||||||||| ||||| |||||||| |||||||| || ||| |||| | ||||||| |||| || |||||||| ||| |
|
|
| T |
13289952 |
ggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgtta |
13290051 |
T |
|
| Q |
126 |
ctctcgaagcatgcattgggcagtga |
151 |
Q |
| |
|
|| || ||||||||||| || ||||| |
|
|
| T |
13290052 |
ctttcaaagcatgcatttggaagtga |
13290077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 151
Target Start/End: Original strand, 10889603 - 10889718
Alignment:
| Q |
36 |
acaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaatgaagattgttggtctttactctcgaagc |
135 |
Q |
| |
|
||||| ||||| |||||||||| ||||| |||||||| | |||||| || ||||||||| || |||| ||||||||| |||||||||||||| |||| |
|
|
| T |
10889603 |
acaacacgccagcaaaaagttgcagaggttgcacacacgtatcctattcacaaattagaagttttatctaatgaagatacatggtctttactctcaaagc |
10889702 |
T |
|
| Q |
136 |
atgcattgggcagtga |
151 |
Q |
| |
|
||||||| || ||||| |
|
|
| T |
10889703 |
atgcatttggaagtga |
10889718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 293
Target Start/End: Original strand, 13171475 - 13171585
Alignment:
| Q |
183 |
gaagaaataggcaggaagattgcaagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagt |
282 |
Q |
| |
|
|||||||| || || |||||||| | ||||||||| |||||||| || ||| |||||||| | |||||| |||| ||||||||||||||| || ||||| |
|
|
| T |
13171475 |
gaagaaattggtagaaagattgccaaaaagtgtggtggattgcccatagctcctaaaacactcggaggaattttgcgttcaaaggtagatgcaaaagagt |
13171574 |
T |
|
| Q |
283 |
ggacttcaatt |
293 |
Q |
| |
|
||||| ||||| |
|
|
| T |
13171575 |
ggactgcaatt |
13171585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 10501018 - 10501102
Alignment:
| Q |
183 |
gaagaaataggcaggaagattgcaagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaagg |
267 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||| |||||||| || ||||| ||| || | |||||||| || |||||||||| |
|
|
| T |
10501018 |
gaagagattggcaggaagattgctagaaagtgtggtggattgccgatagctgcaaaagcacttggaggactattgcgttcaaagg |
10501102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 26907159 - 26907458
Alignment:
| Q |
1 |
tcattgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttct |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
26907159 |
tcattcatggaaaacctggaagcatggtgattataacaacgcgccaacaaaaagttgcagaggtggcacatacatttcctatacataaattagaacctct |
26907258 |
T |
|
| Q |
101 |
atcaaatgaagattgttggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaag |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||| ||| | |||||| ||| | || ||||||||||| |||||||| ||||||||| |
|
|
| T |
26907259 |
atcaactgaagattgttggtctttactctcaaagcatgcattgggaagtaaagagtttcaccatagtattaacacaaccctcgaagaaattggcaggaag |
26907358 |
T |
|
| Q |
201 |
attgcaagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaattttgaaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26907359 |
attgcaagaaagtgtggaggattgccaattgctgctaaaacactaggaggaattctacgttcaaaggtagacataacagagtggacttcaattttgaaca |
26907458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 102 - 295
Target Start/End: Complemental strand, 58126 - 57933
Alignment:
| Q |
102 |
tcaaatgaagattgttggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaaga |
201 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||| |||||||||||| ||| | |||||| ||| ||||||||||||| |||||||||| |
|
|
| T |
58126 |
tcaaatgaagattgttggtctttactctcaaactatgcattgggaagtgatgagtttcaccatagtacaaatacagcccttgaagaaattggcaggaaga |
58027 |
T |
|
| Q |
202 |
ttgcaagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaatttt |
295 |
Q |
| |
|
||||||||| |||||| ||||||||||| |||||||||||| ||||||||||| | | |||||||||||| |||||| |||||||||||||||| |
|
|
| T |
58026 |
ttgcaagaaggtgtgggggattgccaatagctgctaaaacactaggaggacttctcctttcaaaggtagacataacatagtggacttcaatttt |
57933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 7 - 270
Target Start/End: Original strand, 11485306 - 11485569
Alignment:
| Q |
7 |
atggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaa |
106 |
Q |
| |
|
||||| || ||| ||||| |||||| |||||||| ||| |||| |||||||| ||||| ||| | |||||||||| ||||||||||||| |||||| | |
|
|
| T |
11485306 |
atggagaaactgtaagcaaggtgatcataacaacacgcgaagagaaagttgcagaggtcgcatgcgcatttcctattcataaattagaacctctatctga |
11485405 |
T |
|
| Q |
107 |
tgaagattgttggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaagattgca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||| || ||| | || | || ||| ||| ||||| || |||||||||||||| |
|
|
| T |
11485406 |
tgaagattgttggtctttactctcgaagcatgcatttggcggtgaagaatttcttcggggtaaatacccaaacctagaagagattggcaggaagattgct |
11485505 |
T |
|
| Q |
207 |
agaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtag |
270 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||| || | |||||||| | | ||||||||||| |
|
|
| T |
11485506 |
agaaagtgtggtggattgccaattgctgcaaaagcacttggaggactaatgcattcaaaggtag |
11485569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 44957476 - 44957199
Alignment:
| Q |
20 |
aagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaatgaagattgttgg |
119 |
Q |
| |
|
||||| ||| || |||||||| || || |||| ||||| ||||| |||||||||||||| || ||||||||||||| |||||| |||||||||||||| |
|
|
| T |
44957476 |
aagcaaggtcatcataacaacacgtgaacaaaacgttgcagaggttgcacacacatttccgattcataaattagaacctctatctgatgaagattgttgg |
44957377 |
T |
|
| Q |
120 |
tctttactctcgaagcatgcattgggcagtgatga--gttttacctcaatacaa-acacaacccttgaagaaataggcaggaagattgcaagaaagtgtg |
216 |
Q |
| |
|
||||||||||| ||||||||||| | ||| || || || | |||| || || ||| ||| ||||| || |||||||||||||| | ||| |||| |
|
|
| T |
44957376 |
tctttactctcaaagcatgcatttgacagcgaagaccgtgt----tcaaggtaatacccaaacctagaagagattggcaggaagattgctaaaaaatgtg |
44957281 |
T |
|
| Q |
217 |
gaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaattttgaa |
298 |
Q |
| |
|
| ||||||||||| ||||| |||||| | ||||||||| | ||||||||| ||| | || ||||||||||||||| |||| |
|
|
| T |
44957280 |
gtggattgccaatagctgccaaaacactgggaggacttatgcgttcaaagatagttgaaaaggagtggacttcaattctgaa |
44957199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 31679540 - 31679276
Alignment:
| Q |
1 |
tcattgatggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttct |
100 |
Q |
| |
|
||||||||||| || ||||||| | ||||||||| ||||| || ||| |||||||||| ||| | | || || |||||||| |||||||||||| ||| |
|
|
| T |
31679540 |
tcattgatggagaatctggaagtagggtgattatcacaacacgtcaataaaaagttgccgagttcacccatacctttcctatctataaattagaacctct |
31679441 |
T |
|
| Q |
101 |
atcaaatgaagattgttggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaag |
200 |
Q |
| |
|
|||| |||| ||||| |||||||||||||| ||||||||||| || ||||| || ||| | || | || ||| ||| |||| ||| || |||||| |
|
|
| T |
31679440 |
atcagatgatgattgctggtctttactctcaaagcatgcatttggaagtgaagaactttgtggccgtaaatacccaagcctagaagcaattggtaggaag |
31679341 |
T |
|
| Q |
201 |
attgcaagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaa |
265 |
Q |
| |
|
||||||| ||||||| | ||||||||||| ||||| |||||| | ||||||||| |||| ||||| |
|
|
| T |
31679340 |
attgcaaaaaagtgttgcggattgccaatagctgccaaaacacttggaggacttctacgctcaaa |
31679276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 17852722 - 17852589
Alignment:
| Q |
9 |
ggaaaacctggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaatg |
108 |
Q |
| |
|
|||||| ||||||||| ||| || |||||||| |||| | |||||||||| ||||| |||| ||||||||| || ||||||||||||| | |||| ||| |
|
|
| T |
17852722 |
ggaaaagctggaagcaaggtcatcataacaacacgcctaaaaaaagttgcggaggttgcacgcacatttccaattcataaattagaacctatatccgatg |
17852623 |
T |
|
| Q |
109 |
aagattgttggtctttactctcgaagcatgcatt |
142 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||| |
|
|
| T |
17852622 |
aagattgttggtctttgctctcaaagcatgcatt |
17852589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 145729 - 145454
Alignment:
| Q |
18 |
ggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaatgaagattgtt |
117 |
Q |
| |
|
||||| |||||||| || ||||| |||||| |||||||||| ||||| |||||||| |||||||| || ||| |||| | ||||||| |||| || |||| |
|
|
| T |
145729 |
ggaagtatggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgtt |
145630 |
T |
|
| Q |
118 |
ggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaagattgcaagaaagtgtgg |
217 |
Q |
| |
|
|||| ||||| || ||||||||||| || ||||| || | | | || ||| || |||||||| || || |||||||| | ||||||||| |
|
|
| T |
145629 |
ggtcgttactttcaaagcatgcattcggaagtgaagaccgtcgaggtagaaagtacccaaatctagaagaaattggtagaaagattgccaaaaagtgtgg |
145530 |
T |
|
| Q |
218 |
aggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaatt |
293 |
Q |
| |
|
|||||||| || |||||||||||| | |||||| |||| ||||||||||||||| || |||||||||| ||||| |
|
|
| T |
145529 |
tggattgcccatagctgctaaaacactcggaggaattttgcgttcaaaggtagatgcaaaagagtggactgcaatt |
145454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 135678 - 135545
Alignment:
| Q |
18 |
ggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaatgaagattgtt |
117 |
Q |
| |
|
||||| |||||||| || ||||| |||||| |||||||||| ||||| |||||||| |||||||| || ||| |||| | ||||||| |||| || |||| |
|
|
| T |
135678 |
ggaagtatggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgtt |
135579 |
T |
|
| Q |
118 |
ggtctttactctcgaagcatgcattgggcagtga |
151 |
Q |
| |
|
|||| ||||| || ||||||||||| || ||||| |
|
|
| T |
135578 |
ggtcgttactttcaaagcatgcattcggaagtga |
135545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 293
Target Start/End: Complemental strand, 154026 - 153759
Alignment:
| Q |
26 |
ggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaatgaagattgttggtcttta |
125 |
Q |
| |
|
|||||| || ||||| |||||| |||||||||| ||||| |||||||| |||||||| || ||| |||| | ||||||| |||| || |||||||| ||| |
|
|
| T |
154026 |
ggtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgtta |
153927 |
T |
|
| Q |
126 |
ctctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaagattgcaagaaagtgtggaggattgc |
225 |
Q |
| |
|
|| || ||||||||||| || ||||| || | | | || ||| || |||||||| || || |||||||| | ||||||||| ||||||| |
|
|
| T |
153926 |
ctttcaaagcatgcattcggaagtgaagaccgtcgaggtagaaagtacccaaatctagaagaaattggtagaaagattgccaaaaagtgtggtggattgc |
153827 |
T |
|
| Q |
226 |
caattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagtggacttcaatt |
293 |
Q |
| |
|
| || |||||||||||| | |||||| |||| ||||||||||||||| || |||||||||| ||||| |
|
|
| T |
153826 |
ccatagctgctaaaacactcggaggaattttgcgttcaaaggtagatgcaaaagagtggactgcaatt |
153759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 293
Target Start/End: Complemental strand, 135513 - 135403
Alignment:
| Q |
183 |
gaagaaataggcaggaagattgcaagaaagtgtggaggattgccaattgctgctaaaacaataggaggacttttacgttcaaaggtagatataacagagt |
282 |
Q |
| |
|
|||||||| || || |||||||| | ||||||||| |||||||| || ||| |||||||| | |||||| |||| ||||||||||||||| || ||||| |
|
|
| T |
135513 |
gaagaaattggtagaaagattgccaaaaagtgtggtggattgcccatagctcctaaaacactcggaggaattttgcgttcaaaggtagatgcaaaagagt |
135414 |
T |
|
| Q |
283 |
ggacttcaatt |
293 |
Q |
| |
|
||||| ||||| |
|
|
| T |
135413 |
ggactgcaatt |
135403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 826189 - 826419
Alignment:
| Q |
17 |
tggaagcatggtgattataacaacgcgccaagaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaatgaagattgt |
116 |
Q |
| |
|
|||||| | |||||| || ||||| ||| | |||| |||||| ||||| ||||| || | |||||| |||||||| |||| |||||| | ||| ||||| |
|
|
| T |
826189 |
tggaagtagggtgatcatcacaacacgctacgaaagagttgcagaggttgcacatacgtatcctattcataaattggaacctctatcggacgaacattgt |
826288 |
T |
|
| Q |
117 |
tggtctttactctcgaagcatgcattgggcagtgatgagttttacctcaatacaaacacaacccttgaagaaataggcaggaagattgcaagaaagtgtg |
216 |
Q |
| |
|
|||||||||||||| ||| ||||||| || |||| ||| || || | || ||||| | |||| ||| || | ||||||||||| |||||||| |
|
|
| T |
826289 |
tggtctttactctccaagtatgcatttggaagtggtga---------cattaaatacccaaccttagaagcaattgggaagaagattgcaaaaaagtgtg |
826379 |
T |
|
| Q |
217 |
gaggattgccaattgctgctaaaacaataggaggactttt |
256 |
Q |
| |
|
| ||||||||||| ||||| ||||| ||||||| ||||| |
|
|
| T |
826380 |
gtggattgccaatagctgccaaaacgctaggagggctttt |
826419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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