View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14635_low_2 (Length: 651)
Name: NF14635_low_2
Description: NF14635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14635_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 638
Target Start/End: Original strand, 12988681 - 12989323
Alignment:
| Q |
1 |
tacccattcaagctcaaaggacaagaaaaaatggcaagagaaaaaatagtgtggatttgtatactacccagccaatattctcaggtgagttctt---atc |
97 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12988681 |
taccccttcaagctcaaaggacaataaaaaatggcaagagaaaaaatagtgtggatttgtatactacccagccaatattctcaggtgagttctttttatc |
12988780 |
T |
|
| Q |
98 |
atgatatataaataaatcatgacttgtttctagtaaaattaatttttctaatatgtagcaaatgaactctaaagtaggaaattttttatgatgagtatat |
197 |
Q |
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|||||||||||||||||| || || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12988781 |
atgatatataaataaatctagagttttttctagtaaaattactttttctaatatgtagcaaatgaactctaaagtaggaaattttttatgatgagtatat |
12988880 |
T |
|
| Q |
198 |
tacagatggggacagaggagaaatgactaagaaggctaaaaattgctcatcagttgaagttgttaatgagagtgacaataatgagaatcccnnnnnnnat |
297 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || |
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| T |
12988881 |
tacagatggggacagaggagacatgactaagaaggctaaaaattgctcatcaattgaagttcttaatgagagtgacaataatgagaatcccttttttaat |
12988980 |
T |
|
| Q |
298 |
attacattgccacaatcttacgccaatggctgcaggatggtaagtctactagataaaaatgtctcctaattttggcattagnnnnnnnnnnnnnnnnnnn |
397 |
Q |
| |
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||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12988981 |
gttacattgccacaatcttatgcccatggctgcaggatggtaagtctactagataaaaatgtctccaaattttggcattagtttttttttgtttttttga |
12989080 |
T |
|
| Q |
398 |
nnnnnntaaaataccaataatc--tttaataagtaaaatgtggttcatgatgaattgaaacaggcgataccaagtaatttttcaagagcacacttgaaca |
495 |
Q |
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| T |
12989081 |
gagagataaaataccactaatctttttaataaataaaatgtggttcatgatgaattgaaacaggcgataccaagtaatttttcaagagcacacttgaaca |
12989180 |
T |
|
| Q |
496 |
aatttaaagggattgcaaatttaagagttggtgaggacaagactatggaagtgaatgtgaactttgaagataataatagaagatctgttttgactactgg |
595 |
Q |
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| T |
12989181 |
aatttaaagggattgcaaatttaagagttggtgaggacaagactatggaagtgaatgtgaactttgaagataataatagaagatctgttttgactactgg |
12989280 |
T |
|
| Q |
596 |
ttggaaattatttaaccaaaaatataacttagaagttggtgat |
638 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12989281 |
ttggaaatcatttaaccaaaaatataacttagaagttggtgat |
12989323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 441 - 640
Target Start/End: Original strand, 12991189 - 12991388
Alignment:
| Q |
441 |
catgatgaattgaaacaggcgataccaagtaatttttcaagagcacacttgaacaaatttaaagggattgcaaatttaagagttggtgaggacaagacta |
540 |
Q |
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||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12991189 |
catgatgaattgaaacaggtgataccatgtaatttttcaagagcacacttgaacaaatttaaagggattgcaaatttaagagttggtgaggacaagacta |
12991288 |
T |
|
| Q |
541 |
tggaagtgaatgtgaactttgaagataataatagaagatctgttttgactactggttggaaattatttaaccaaaaatataacttagaagttggtgatga |
640 |
Q |
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| T |
12991289 |
tggaagtgaatgtgacgtttgaagaagccaaaagaagatctcttgtgactactggttggaaatcatttaaccaaaaatataacttacaggttggtgatga |
12991388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 93 - 373
Target Start/End: Original strand, 12990836 - 12991124
Alignment:
| Q |
93 |
ttatcatgatatataaataaatcatgacttgtttctagtaaaattaatttttctaatatgtagcaaatgaactctaaagtaggaaattttttatgatgag |
192 |
Q |
| |
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|||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||| |
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| T |
12990836 |
ttatcatgatatataaataatgta-gacttgtttctagtaaaattactttttctaatacgttgcaaatgaactctaaagtaggaaatttttaatgatgag |
12990934 |
T |
|
| Q |
193 |
tata------ttacagatggggacagaggagaaatgactaagaaggctaaaaattgctcatcagttgaagttgttaatgagagtgacaataatgagaatc |
286 |
Q |
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|||| || ||| | |||||| |||| |||| |||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
12990935 |
tatatttactttgcaggtaaggacagtggaggcatgattaagaaagctaaaaattgctcaccggttgaagttgttaatgagagtgacaataatgagaatc |
12991034 |
T |
|
| Q |
287 |
ccnnnnnnnatattacattgccacaatcttacgccaatggctgc---aggatggtaagtctactagataaaaatgtctcctaattttggc |
373 |
Q |
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|| || |||||||| || ||||||||| | ||||| || | | |||||||| ||| | ||||||||||| ||||||||||| |
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| T |
12991035 |
cctttttttatgttacattgtcaaaatcttacgtccatggcagcaatatgttggtaagtttaccatctaaaaatgtctactaattttggc |
12991124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 445 - 534
Target Start/End: Original strand, 12995351 - 12995440
Alignment:
| Q |
445 |
atgaattgaaacaggcgataccaagtaatttttcaagagcacacttgaacaaatttaaagggattgcaaatttaagagttggtgaggaca |
534 |
Q |
| |
|
||||||||||||||| ||||||| | || ||||||||| || |||||||||||||| |||||||||||| ||||||||||| ||||||| |
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| T |
12995351 |
atgaattgaaacaggtgataccatgcaacttttcaagatcatacttgaacaaatttgaagggattgcaagcttaagagttggagaggaca |
12995440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 586 - 638
Target Start/End: Original strand, 12995492 - 12995544
Alignment:
| Q |
586 |
tgactactggttggaaattatttaaccaaaaatataacttagaagttggtgat |
638 |
Q |
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| T |
12995492 |
tgagtactggttggaagttatttaaccaaaaatataacttacaagttggtgat |
12995544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 445 - 505
Target Start/End: Complemental strand, 12886503 - 12886443
Alignment:
| Q |
445 |
atgaattgaaacaggcgataccaagtaatttttcaagagcacacttgaacaaatttaaagg |
505 |
Q |
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|||| ||||||||| | |||||||||| |||||||||| |||||||||||| |||||||| |
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| T |
12886503 |
atgatttgaaacagtgggtaccaagtaagttttcaagagaacacttgaacaattttaaagg |
12886443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 513
Target Start/End: Complemental strand, 12192508 - 12192441
Alignment:
| Q |
446 |
tgaattgaaacaggcgataccaagtaatttttcaagagcacacttgaacaaatttaaagggattgcaa |
513 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||| | |||||||| | || |||||||||||| |
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| T |
12192508 |
tgaattgaaacagaggataccaagtaagttttcaagagaatacttgaacgagttcgaagggattgcaa |
12192441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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