View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14635_low_20 (Length: 261)

Name: NF14635_low_20

Description: NF14635

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14635_low_20

[»] chr2 (5 HSPs)

Alignment Details

Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 5)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 198; E-Value: 1e-108

Query Start/End: Original strand, 1 - 261

Target Start/End: Original strand, 44992654 - 44992915

Alignment:

Q	1	aaacgtagtacaaaactcaccacagaaaaccaaaatgnnnnnnnttcattattgatgcagcctgaatgttttcatacattagatgaaggataagaatcaa	100	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	44992654	aaacgttgtacaaaactcaccacagaaaaccaaaatgaaaaaaattcattattgatgcagcctgaacgttttcatacattagatgaaggataagaatcaa	44992753	T

Q	101	ccacataaaaagcaaaaagtttggattcgtctccannnnnnnnn-caattaagataaatctgggcacaaaagccatatatttgacaattttcagttgata	199	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	44992754	ccacataaaaagcaaaaagtttggattcgtctccattttttttttcaattaagataaatctgggcacaaaagccatatatttgacaattttcagttgata	44992853	T

Q	200	aacccaatttgcccaagaaataaagatgagaaagtagcataatactttttgatatacttctt	261	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	44992854	aacccaatttgcccaagaaataaagatgagaaagtagcataatactttttgatatacttctt	44992915	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2

Raw Score: 79; E-Value: 5e-37

Query Start/End: Original strand, 167 - 261

Target Start/End: Original strand, 44980173 - 44980267

Alignment:

Q	167	aaaagccatatatttgacaattttcagttgataaacccaatttgcccaagaaataaagatgagaaagtagcataatactttttgatatacttctt	261	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	44980173	aaaagccatttatttgacaattttcagttgataaacccaattttcccaagaaataaagataagaaagtagcataataccttttgatatacttctt	44980267	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3

Raw Score: 59; E-Value: 4e-25

Query Start/End: Original strand, 163 - 261

Target Start/End: Original strand, 44965088 - 44965186

Alignment:

Q	163	gcacaaaagccatatatttgacaattttcagttgataaacccaatttgcccaagaaataaagatgagaaagtagcataatactttttgatatacttctt	261	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\| \| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	44965088	gcacaaaagccatttgtttgaaaattttctgttgttcaacccaatttacccaagaaataaagttgagaaagtagcatattactttttgatacacttctt	44965186	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4

Raw Score: 55; E-Value: 1e-22

Query Start/End: Original strand, 147 - 261

Target Start/End: Original strand, 44981284 - 44981398

Alignment:

Q	147	attaagataaatctgggcacaaaagccatatatttgacaattttcagttgataaacccaatttgcccaagaaataaagatgagaaagtagcataatactt	246	Q
		\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\| \| \|\|\|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|
T	44981284	attaagatatttcttggcacaaaagtcatttgtttgtcaattttctattaataaatccaatttacccaataaataaagatgagaaagtagcataatacat	44981383	T

Q	247	tttgatatacttctt	261	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	44981384	tttgatatatttctt	44981398	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5

Raw Score: 40; E-Value: 0.0000000000001

Query Start/End: Original strand, 45 - 135

Target Start/End: Original strand, 44980021 - 44980112

Alignment:

Q	45	ttcattattgatgcagcctgaatgttttcatacattagatgaaggataagaatca-accacataaaaagcaaaaagtttggattcgtctcca	135	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	44980021	ttcattatagatgcagcccaaatcttttcctatattagatgaaggataagaatcatcccccaagaaaagcaaaaagtgtggattcgtctcca	44980112	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]