View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14635_low_21 (Length: 242)
Name: NF14635_low_21
Description: NF14635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14635_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 33201027 - 33200861
Alignment:
| Q |
1 |
cagttagttctcatctttgtaaggatattcacacaagtatttccttcgggaagagcatgtttcaaaacaaaatttcaatccttcttcatgtaatctttga |
100 |
Q |
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| T |
33201027 |
cagttagttctcatctttgcaaggatattcacataagcatttccttcacgaagagcatgtttcaaaacaaaatttcaatccttcttcatgtaatctttga |
33200928 |
T |
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| Q |
101 |
taatctccaccatattagcataattgtgatatcaatgtgttctcatagtcaccaacttgaccacttg |
167 |
Q |
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| T |
33200927 |
taatctccatcatattagcataattgtgatatcgatgtgttctcatagtcaccaacttgaccacttg |
33200861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 37829287 - 37829195
Alignment:
| Q |
51 |
aagagcatgtttcaaaacaaaatttcaatccttcttcatgtaatctttgataatctccaccatat---tagcataattgtgatatcaatgtgt |
140 |
Q |
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| T |
37829287 |
aagagtatgtttcaaaacaaaatttcaatcattcttcatgtaatctttgatgatctccaccatattagtagcataatagtgatatcgatgtgt |
37829195 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 160
Target Start/End: Original strand, 38714305 - 38714460
Alignment:
| Q |
4 |
ttagttctcatctttgtaaggatatt--cacacaagtatttccttcgggaagagcatgtttcaaaacaaaatttcaatccttcttcatgtaatctttgat |
101 |
Q |
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| T |
38714305 |
ttagctctcatctttgcaaggatatatccgcacaagcattccattcacgaagagtatgtttcaaaacaatatttcagtcattcttcatgtaatctttgat |
38714404 |
T |
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| Q |
102 |
aatctccaccatattagcataattgtgatatcaatgtgttctcatagtcaccaacttga |
160 |
Q |
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| T |
38714405 |
aat---caccatgttagcataatggtgatattgatgtgttctcatagttaccaacttga |
38714460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 3392273 - 3392130
Alignment:
| Q |
9 |
tctcatctttgtaaggatattcacacaagtatttccttcgggaagagcatgtttcaaaacaaaatttcaatccttcttcatgtaatctttgataatctcc |
108 |
Q |
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| T |
3392273 |
tctcatctttgcaatgatataaacacaagcattcccttcacaaagagtgtgcttcaaaaagaaatttcaatctttattcatgaaatctctaataatctcc |
3392174 |
T |
|
| Q |
109 |
accatattagcataattgtgatatcaatgtgttctcatagtcac |
152 |
Q |
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| T |
3392173 |
aacatattagcataatagtgatatagatgtgttcctatagtcac |
3392130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 4953237 - 4953324
Alignment:
| Q |
9 |
tctcatctttgtaaggatattcacacaagtatttccttcgggaagagcatgtttcaaaacaaaatttcaatccttcttcatgtaatct |
96 |
Q |
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| T |
4953237 |
tctcatctttgtcaagatatcggcacaagcatttcctttataaagagtatgtttcaaaacaaaatttcaatccttcttcgtgaaatct |
4953324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 43928671 - 43928788
Alignment:
| Q |
25 |
atattcacacaagtatttccttcgggaagagcatgtttcaaaacaaaatttcaatccttcttcatgtaatctttgataatctccaccatattagcataat |
124 |
Q |
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| T |
43928671 |
atatccacacaagcattcctttcacgaagagtatttttcaaaacaaaatc-caatcattttttatgtaatctttgatagtctccaccatattaacattat |
43928769 |
T |
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| Q |
125 |
tgtgatatcaatgtgttct |
143 |
Q |
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| T |
43928770 |
tgtgatatcgatatgttct |
43928788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 32501705 - 32501593
Alignment:
| Q |
20 |
taaggatattcacacaagtatttccttcgggaagagcatgtttcaaaacaaaatttcaatccttcttcatgtaatctttgataatctccaccatattagc |
119 |
Q |
| |
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||||||||| ||||||| |||| | ||| |||||| |||||||||||||||||| ||||| ||||| ||| ||| | |||| || || ||||||||| |
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| T |
32501705 |
taaggatatccacacaaatattacattcatgaagagtatgtttcaaaacaaaattccaatctttcttaatgcaatataccataaccttcaacatattagc |
32501606 |
T |
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| Q |
120 |
ataattgtgatat |
132 |
Q |
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|||| ||||||| |
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| T |
32501605 |
ttaatggtgatat |
32501593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 25455163 - 25455116
Alignment:
| Q |
69 |
aaaatttcaatccttcttcatgtaatctttgataatctccaccatatt |
116 |
Q |
| |
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|||||||||||| |||||||||||| || |||||||||||| |||||| |
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| T |
25455163 |
aaaatttcaatctttcttcatgtaagctctgataatctccaacatatt |
25455116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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