View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14635_low_23 (Length: 203)

Name: NF14635_low_23
Description: NF14635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14635_low_23
NF14635_low_23
[»] chr3 (33 HSPs)
chr3 (1-195)||(13853921-13854115)
chr3 (1-192)||(10672316-10672507)
chr3 (1-188)||(10527992-10528179)
chr3 (1-183)||(10089424-10089606)
chr3 (1-183)||(10196307-10196489)
chr3 (1-183)||(10127562-10127744)
chr3 (1-195)||(10664160-10664354)
chr3 (1-183)||(10261332-10261514)
chr3 (1-183)||(10032637-10032819)
chr3 (1-183)||(9839495-9839677)
chr3 (1-183)||(9850373-9850555)
chr3 (1-183)||(10581244-10581426)
chr3 (3-183)||(10363051-10363231)
chr3 (3-195)||(11769870-11770062)
chr3 (2-180)||(10433300-10433478)
chr3 (1-195)||(10501208-10501402)
chr3 (1-183)||(10375098-10375280)
chr3 (1-191)||(10077903-10078093)
chr3 (1-191)||(10184876-10185066)
chr3 (1-183)||(11781235-11781417)
chr3 (1-183)||(10518119-10518301)
chr3 (3-182)||(11159271-11159450)
chr3 (3-178)||(11245879-11246054)
chr3 (3-178)||(10889942-10890117)
chr3 (3-182)||(8861922-8862101)
chr3 (3-182)||(11130280-11130459)
chr3 (3-181)||(11148109-11148287)
chr3 (1-195)||(13161614-13161808)
chr3 (1-195)||(13333538-13333732)
chr3 (1-195)||(13344723-13344917)
chr3 (1-195)||(13290299-13290493)
chr3 (1-97)||(13396123-13396219)
chr3 (1-195)||(13171665-13171859)
[»] chr2 (1 HSPs)
chr2 (1-195)||(26907531-26907725)
[»] scaffold0083 (2 HSPs)
scaffold0083 (1-183)||(57664-57846)
scaffold0083 (3-183)||(56855-57035)
[»] chr8 (2 HSPs)
chr8 (1-195)||(11485672-11485866)
chr8 (1-194)||(44956931-44957124)
[»] chr4 (1 HSPs)
chr4 (1-194)||(17852165-17852358)
[»] chr6 (1 HSPs)
chr6 (1-184)||(31678985-31679168)
[»] scaffold0002 (3 HSPs)
scaffold0002 (1-195)||(153485-153679)
scaffold0002 (1-195)||(145180-145374)
scaffold0002 (1-195)||(135129-135323)
[»] chr7 (2 HSPs)
chr7 (3-100)||(29837276-29837373)
chr7 (146-194)||(29837419-29837467)
[»] chr1 (1 HSPs)
chr1 (1-100)||(826536-826635)


Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 13854115 - 13853921
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||  |||||||||||||||||||| |||||||||||||||    
T  13854115 atttgaaaagatgttttgcatattgttcaatttttccaaaggactacccacttgataggaagcaattggttttgttgtggatggcagaaggcttccttga 13854016  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaatcaaatgatgatg 195  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  13854015 ttgttctcaagggggaaaaatgactgaggaatttggtgatgattgctttcttgaattgtcatccagatccttaattcaacaatcaaatgatgatg 13853921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 10672316 - 10672507
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| ||    
T  10672316 atttgaaaagatgttttgcatattgttcaatttttccaaaggatttcccacttgataagaagacattggttttgttgtggatggcagaaggcttcctcga 10672415  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaatcaaatgatg 192  Q
    ||||||||||| |||||||||| | |||||| | |||||||| ||||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  10672416 ttgttctcaagagggaaaaatggcagaggaagtaggtgatgactgctttgctgaattgttgtccagatccttaattcagcaatcaaatgatg 10672507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 10527992 - 10528179
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| ||    
T  10527992 atttgaaaagatgttttgcatattgttcaatttttccaaaggatttcccacttgataagaagacattggttttgttgtggatggcagaaggcttcctcga 10528091  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaatcaaat 188  Q
    ||||||||||| |||||||||| | |||||| | |||||||| ||||||| ||||||||| ||||||||||||||||| |||||||||    
T  10528092 ttgttctcaagagggaaaaatggcagaggaagtaggtgatgactgctttgctgaattgttgtccagatccttaattcagcaatcaaat 10528179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 10089424 - 10089606
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||    
T  10089424 atttgaaaagatgttttgcatattgttcaatttttccaaaggattacccacttgataggaagcaattggttttgttgtggatggcagaaggcttccttga 10089523  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaat 183  Q
    ||||||||| |||||||||  ||  |||||||| |||||||||||||||| |||||||||||| ||||| |||||||||||||    
T  10089524 ttgttctcatgggggaaaagcgatggaggaattaggtgatgattgctttgctgaattgttatcgagatcgttaattcaacaat 10089606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 10196307 - 10196489
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||    
T  10196307 atttgaaaagatgttttgcatattgttcaatttttccaaaggattacccacttgataggaagcaattggttttgttgtggatggcagaaggcttccttga 10196406  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaat 183  Q
    ||||||||| |||||||||  ||  |||||||| |||||||||||||||| |||||||||||| ||||| |||||||||||||    
T  10196407 ttgttctcatgggggaaaagcgatggaggaattaggtgatgattgctttgctgaattgttatcgagatcgttaattcaacaat 10196489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 10127562 - 10127744
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  10127562 atttgaaaagatgttttgcatattgttcaatttttccaaaggatttcccacttgataagaagacattggttttgttgtggatggcagaaggcttccttga 10127661  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaat 183  Q
    |||||||||||||||||||  |   |||||||| ||||||||||| |||| |||||||||||| ||||| |||||||||||||    
T  10127662 ttgttctcaagggggaaaagagttggaggaattaggtgatgattgttttgctgaattgttatcgagatcattaattcaacaat 10127744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 10664160 - 10664354
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||    
T  10664160 atttgaagagatgttttgcatattgttcaatttttccaaaggattacccacttgataggaagcaattggttttgttgtggatggcagaaggcttccttga 10664259  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaatcaaatgatgatg 195  Q
    ||||||||||||||| ||||  |  |||||||| ||||||||||| |||| |||||||||||| ||||| ||||||||||||||||  |||||||    
T  10664260 ttgttctcaaggggggaaaacaatggaggaattaggtgatgattgttttgctgaattgttatcgagatctttaattcaacaatcaagcgatgatg 10664354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 10261332 - 10261514
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| ||||||||| |||||||||||||||    
T  10261332 atttgaaaagatgttttgcatattgttcaatttttccaaaggattatccacttgaaaggaagacattggttttgctgtggatggcagaaggcttccttga 10261431  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaat 183  Q
    |||||||||||||||||||| |   |||||||| || |||||||| |||| |||||||||||| ||||| |||||||||||||    
T  10261432 ttgttctcaagggggaaaaaagttggaggaattaggcgatgattgttttgctgaattgttatcgagatcgttaattcaacaat 10261514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 10032637 - 10032819
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| ||||||||| |||||||||||||||    
T  10032637 atttgaaaagatgttttgcatattgttcaatttttccaaaggattatccacttgaaaggaagacattggttttgctgtggatggcagaaggcttccttga 10032736  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaat 183  Q
    |||||||||||||||||||| |   |||||||| || |||||||| |||| ||||||| |||| ||||| |||||||||||||    
T  10032737 ttgttctcaagggggaaaaaagttggaggaattaggcgatgattgttttgctgaattgctatcgagatcgttaattcaacaat 10032819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 9839495 - 9839677
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    ||||||||||||| |||||||||||||| |||||||||||||||| |||||| |||||||||  |||||||||||||||||||| |||||||||||||||    
T  9839495 atttgaaaagatgctttgcatattgttcaatttttccaaaggattgcccactcgataggaaggaattggttttgttgtggatggcagaaggcttccttga 9839594  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaat 183  Q
    |||||||||| |||| |||| ||  |||||||| ||||||||||| |||| |||||||||||| ||||| |||||||||||||    
T  9839595 ttgttctcaacgggggaaaaagatggaggaattaggtgatgattgttttgctgaattgttatcgagatcgttaattcaacaat 9839677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 9850373 - 9850555
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    ||||||||||||| |||||||||||||| |||||||||||||||| |||||| |||||||||  |||||||||||||||||||| |||||||||||||||    
T  9850373 atttgaaaagatgctttgcatattgttcaatttttccaaaggattgcccactcgataggaagcaattggttttgttgtggatggcagaaggcttccttga 9850472  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaat 183  Q
    |||||||||| |||| |||| ||  |||||||| ||||||||||| |||| |||||||||||| ||||| |||||||||||||    
T  9850473 ttgttctcaacgggggaaaaagatggaggaattaggtgatgattgttttgctgaattgttatcgagatcgttaattcaacaat 9850555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 10581244 - 10581426
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    ||||||||||||| |||||||||||||| |||||||||||||||| |||||| |||||||||  |||||||||||||||||||| |||||||||||||||    
T  10581244 atttgaaaagatgctttgcatattgttcaatttttccaaaggattgcccactcgataggaagcaattggttttgttgtggatggcagaaggcttccttga 10581343  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaat 183  Q
    |||||| |||||||| |||| |   |||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||    
T  10581344 ttgttcacaaggggggaaaaagttggaggaattaggtgatgattgttttgttgaattgttatcgagatcgttaattcaacaat 10581426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 183
Target Start/End: Complemental strand, 10363231 - 10363051
Alignment:
Q  3 ttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttgatt 102  Q
    ||||||||||| |||||||||||||| |||||||||||||||| |||||| |||||||||  |||||||||||||||||||| |||||||||||||||||    
T  10363231 ttgaaaagatgctttgcatattgttcaatttttccaaaggattgcccactcgataggaagcaattggttttgttgtggatggcagaaggcttccttgatt 10363132  T
Q  103 gttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaat 183  Q
    ||||||||||||| |||| |   |||||||| ||||||||||| |||| |||||||||||| ||||| |||||||||||||    
T  10363131 gttctcaaggggggaaaaagttggaggaattaggtgatgattgttttgctgaattgttatcgagatcgttaattcaacaat 10363051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 195
Target Start/End: Original strand, 11769870 - 11770062
Alignment:
Q  3 ttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttgatt 102  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| |||||| ||||||||||    
T  11769870 ttgaaaagatgttttgcatattgttcaatttttccaaaggactacccacttgataggaagaaattgattttgttgtggatggcagaaggattccttgatt 11769969  T
Q  103 gttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaatcaaatgatgatg 195  Q
    |||||||||| || |||| |   ||||| || ||||||||||| |||| |||||||||||| ||||| ||||||||||||| || ||||||||    
T  11769970 gttctcaaggtgggaaaaagttggaggacttgggtgatgattggtttgctgaattgttatcgagatcgttaattcaacaattaagtgatgatg 11770062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 2 - 180
Target Start/End: Complemental strand, 10433478 - 10433300
Alignment:
Q  2 tttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttgat 101  Q
    |||||||||||| |||||||||||||| |||||||||||||||| |||||| |||||||||  |||||||||||||||||||| ||||||||||||||||    
T  10433478 tttgaaaagatgctttgcatattgttcaatttttccaaaggattgcccactcgataggaagcaattggttttgttgtggatggcagaaggcttccttgat 10433379  T
Q  102 tgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaac 180  Q
    ||||||||||||||||||  |   |||||||| ||| ||||||| |||| |||||||||||| ||||| ||||||||||    
T  10433378 tgttctcaagggggaaaagagttggaggaattaggtaatgattgttttgctgaattgttatcgagatcgttaattcaac 10433300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 10501208 - 10501402
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    |||| |||||||| ||||| |||||||| ||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||    
T  10501208 atttaaaaagatgctttgcctattgttctattttcccaaaagattacccactggataggaagaaattggttttgttgtggatggcagaaggcttccttga 10501307  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaatcaaatgatgatg 195  Q
    || ||||||||| | ||||| | | |||||| | ||||||||||  ||||| ||||||||||| ||||| |||||||||||||||||||||||||    
T  10501308 ttattctcaaggcgaaaaaacggcggaggaagtcggtgatgattattttgtcgaattgttatctagatcgttaattcaacaatcaaatgatgatg 10501402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 10375280 - 10375098
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||  |||||||||||||||||||| ||||||||| |||||    
T  10375280 atttgaaaagatgttttgcatattgttcaatttttcccaaggattgcccacttgataggaagcaattggttttgttgtggatggcagaaggctttcttga 10375181  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaat 183  Q
    |||||||||||||||||||      |||||||| ||  ||||||| |||| |||||||||||  ||||| |||||||||||||    
T  10375180 ttgttctcaagggggaaaagatttggaggaattaggcaatgattgttttgctgaattgttattgagatcattaattcaacaat 10375098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 10077903 - 10078093
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    ||||||||| |||||||||||||||||| ||||||||||||| | || ||||||| ||||||| |||||||||| ||||||||| ||||||||| |||||    
T  10077903 atttgaaaatatgttttgcatattgttcaatttttccaaagggtcacacacttgacaggaagaaattggttttgctgtggatggcagaaggctttcttga 10078002  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaatcaaatgat 191  Q
    || ||| || ||||  |||| ||  || ||||| |||| ||||||||||| |||||| || ||||||||||||||||||||||||||||||    
T  10078003 ttattcacatggggagaaaacgatggaagaattaggtggtgattgctttgctgaattattgtccagatccttaattcaacaatcaaatgat 10078093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 10184876 - 10185066
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    ||||||||| |||||||||||||||||| ||||||||||||| | || ||| ||| ||||||| |||||||||| ||||||||| ||||||||| |||||    
T  10184876 atttgaaaatatgttttgcatattgttctatttttccaaagggtcacacacatgacaggaagaaattggttttgctgtggatggcagaaggctttcttga 10184975  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaatcaaatgat 191  Q
    || ||| || ||||  |||| ||  || ||||| |||||||||||||||| |||||| || ||||||||||||||||||||||||||||||    
T  10184976 ttattcacatggggagaaaacgatggaagaattaggtgatgattgctttgctgaattattgtccagatccttaattcaacaatcaaatgat 10185066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 11781417 - 11781235
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    |||||||||||||||| || |||||||| |||||||||||||||||||||||||| ||||| | | |||||||||||||||||| ||||||| |||||||    
T  11781417 atttgaaaagatgtttcgcctattgttctatttttccaaaggattacccacttgagaggaaaaaactggttttgttgtggatggcagaaggcctccttga 11781318  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaat 183  Q
    || ||||||||| | |||  ||   |||||| ||||||||||||| |||| |||||||||||| ||||| |||||||||||||    
T  11781317 ttattctcaaggcgaaaatgtggtggaggaagttggtgatgattgttttgctgaattgttatcaagatcgttaattcaacaat 11781235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 10518119 - 10518301
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    |||||||||||||||| || |||||||| |||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||||| ||||||||    
T  10518119 atttgaaaagatgtttcgcctattgttctatttttccaaaggattacccacttgagaggaaaaaattggttttgttgtggatggcagaaggtttccttga 10518218  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaat 183  Q
    || ||||||||  | |||   ||  |||||| ||||||||||||| |||| |||||| ||||| ||||| |||||||||||||    
T  10518219 ttattctcaagatgaaaatgcgatggaggaaattggtgatgattgttttgctgaattattatcaagatcattaattcaacaat 10518301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 3 - 182
Target Start/End: Complemental strand, 11159450 - 11159271
Alignment:
Q  3 ttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttgatt 102  Q
    ||||||||||||||| |||||||||| |||||||||||||| ||  ||||||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  11159450 ttgaaaagatgtttttcatattgttccatttttccaaaggactatacacttgataggaagcaattggttttgttgtggatggcagaaggcttccttgatt 11159351  T
Q  103 gttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaa 182  Q
     |||||| |  | ||||   |  || ||| | ||||||||||| |||| |||||||||||||||||| ||||||||||||    
T  11159350 attctcaggacgaaaaagccatggaagaagtaggtgatgattgttttgctgaattgttatccagatcattaattcaacaa 11159271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 178
Target Start/End: Complemental strand, 11246054 - 11245879
Alignment:
Q  3 ttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttgatt 102  Q
    ||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||  |||||||||||||||||||| ||||||||||||||||     
T  11246054 ttgaaaagatgttttgcctattgttcgatttttccgaaggactatccacttgataggaagcaattggttttgttgtggatggcagaaggcttccttgatc 11245955  T
Q  103 gttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattca 178  Q
     ||||||||  ||||||   |  || ||| | |||||||| ||||||  |||||||||||| ||||| ||||||||    
T  11245954 attctcaagatggaaaagctatggaagaagtaggtgatgagtgcttttctgaattgttatctagatcattaattca 11245879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 3 - 178
Target Start/End: Original strand, 10889942 - 10890117
Alignment:
Q  3 ttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttgatt 102  Q
    ||||||||||||||| |||| ||||| |||||||||||||| ||  ||||||||||||||| |||||||||||||||||||| |||||||||| |||||     
T  10889942 ttgaaaagatgtttttcatactgttccatttttccaaaggactatacacttgataggaagaaattggttttgttgtggatggcagaaggcttcattgatc 10890041  T
Q  103 gttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattca 178  Q
     ||||||||  ||||||   |  || ||| | |||||||| ||||||  |||||||||||| ||||| ||||||||    
T  10890042 attctcaagatggaaaagctatggaagaagtaggtgatgagtgcttttctgaattgttatctagatcattaattca 10890117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 3 - 182
Target Start/End: Original strand, 8861922 - 8862101
Alignment:
Q  3 ttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttgatt 102  Q
    ||||||||||||||| |||||||||| |||||||||||||| ||  ||||| ||||||||  |||||| ||||||||||||| ||||||||||||||||     
T  8861922 ttgaaaagatgtttttcatattgttccatttttccaaaggactattcacttaataggaagcaattggtattgttgtggatggcagaaggcttccttgatc 8862021  T
Q  103 gttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaa 182  Q
     |||| |||  | ||||   |  || ||  | ||||||||||| |||| |||| ||||||||||||| ||||||||||||    
T  8862022 attctaaagatgaaaaacccatggaagatgtaggtgatgattgttttgctgaactgttatccagatcattaattcaacaa 8862101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 3 - 182
Target Start/End: Complemental strand, 11130459 - 11130280
Alignment:
Q  3 ttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttgatt 102  Q
    ||||||||||||||| |||||||||| |||||||||||||| ||  ||||| ||||||||  |||||||||||||||||||| ||||||||||||||||     
T  11130459 ttgaaaagatgtttttcatattgttccatttttccaaaggactatacactttataggaagcaattggttttgttgtggatggcagaaggcttccttgatc 11130360  T
Q  103 gttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaa 182  Q
     |||| |||  | ||||   |  || ||| | ||||||||||| ||||  ||| |||||||||| || ||||||||||||    
T  11130359 attctaaagacgaaaaacccatggaagaagtaggtgatgattgttttgcagaactgttatccaggtcattaattcaacaa 11130280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 3 - 181
Target Start/End: Complemental strand, 11148287 - 11148109
Alignment:
Q  3 ttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttgatt 102  Q
    ||||||||||||||| |||||||||| |||||||||||||| ||  ||||| |||||||   |||||| ||||||||||||| ||||||||||||||||     
T  11148287 ttgaaaagatgtttttcatattgttccatttttccaaaggactattcacttaataggaatcaattggtattgttgtggatggcagaaggcttccttgatc 11148188  T
Q  103 gttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaaca 181  Q
     |||| |||  | ||||   |  || ||| | ||||||||||| |||| |||| ||||||||||||| |||||||||||    
T  11148187 attctaaagacgaaaaacccattgaagaagtaggtgatgattgttttgctgaactgttatccagatcattaattcaaca 11148109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 13161614 - 13161808
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    ||||||||||||||||||| ||||| || |||||||| |||||||  |||||||| | ||||  |||| ||||||| ||||||| |||||||||||| ||    
T  13161614 atttgaaaagatgttttgcctattgctcaatttttccgaaggattttccacttgacaagaaggaattgattttgttatggatggcagaaggcttcctaga 13161713  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaatcaaatgatgatg 195  Q
      |||||||| |    ||||   | |||||| | ||  |||| | |||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  13161714 gcgttctcaacgtaataaaacagctgaggaagtaggccatgactactttattgaattgttatccaggtccttaattcaacaatcaaatgatgatg 13161808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 13333538 - 13333732
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    ||||||||||||||||||| ||||| || |||||||| |||||||  |||||||| | ||||  |||| ||||||| ||||||| |||||||||||| ||    
T  13333538 atttgaaaagatgttttgcctattgctcaatttttccgaaggattttccacttgacaagaaggaattgattttgttatggatggcagaaggcttcctaga 13333637  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaatcaaatgatgatg 195  Q
       ||||||| |    ||||   | |||||| | ||  |||| | |||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  13333638 gcattctcaacgtaataaaacagctgaggaagtaggccatgactactttattgaattgttatccaggtccttaattcaacaatcaaatgatgatg 13333732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 13344723 - 13344917
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    ||||||||||||||||||| ||||| || ||||||||||||||||  ||||| || | ||||  |||| ||||||| ||||||| |||||||||||| ||    
T  13344723 atttgaaaagatgttttgcctattgctcaatttttccaaaggattttccactggacaagaaggaattgattttgttatggatggcagaaggcttcctaga 13344822  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaatcaaatgatgatg 195  Q
       ||||||| |    ||||   | |||||| | ||  |||| | |||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  13344823 gcattctcaacgtaataaaacagctgaggaagtaggccatgactactttattgaattgttatccaggtccttaattcaacaatcaaatgatgatg 13344917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 13290299 - 13290493
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    ||||||||||||||||||| ||||| || |||||||| |||||||   ||||||| | ||||  |||| ||||||| ||||||| |||||||||||| ||    
T  13290299 atttgaaaagatgttttgcctattgctcaatttttccgaaggatttttcacttgacaagaaggaattgattttgttatggatggcagaaggcttcctaga 13290398  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaatcaaatgatgatg 195  Q
       ||||||  |    ||||   | |||||| | ||| |||| | |||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  13290399 gcattctcagtgtaataaaacagctgaggaagtaggtcatgactactttattgaattgttatccaggtccttaattcaacaatcaaatgatgatg 13290493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 13396123 - 13396219
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttcct 97  Q
    ||||||||||||||||||| ||||| ||||||||||||||||  || ||  || ||||||||| |||| ||||||||||||||| ||||||||||||    
T  13396123 atttgaaaagatgttttgcctattgctcgatttttccaaagggctatccctttaataggaagaaattgattttgttgtggatggcagaaggcttcct 13396219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 13171665 - 13171859
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    ||||||||||||||||||| ||||| || |||||||| |||||||  ||||| || | ||||  |||| ||||||| ||||||| |||||||||||| ||    
T  13171665 atttgaaaagatgttttgcctattgctcaatttttccgaaggattttccactggacaagaaggaattgattttgttatggatggcagaaggcttcctaga 13171764  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaatcaaatgatgatg 195  Q
       ||||||| |    ||||   | |||||| | ||  |||| | |||| |||||||||||||||| | ||||||||||||||||||||||||||    
T  13171765 gcattctcaacgtaataaaacagctgaggaagtaggccatgactactttattgaattgttatccaggtgcttaattcaacaatcaaatgatgatg 13171859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 26907531 - 26907725
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    ||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||| |||  |||||| ||||||||||||| |||||||||||||||    
T  26907531 atttgaaaagatgttttgcatattgttcactttttccaaaggattatccacttgatagaaagcaattggtcttgttgtggatggcagaaggcttccttga 26907630  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaatcaaatgatgatg 195  Q
     ||||||||||||||||||  |   ||||| || |||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  26907631 ctgttctcaagggggaaaagagttagaggagttaggtgatgatttctttgctgaattgctatccagatccttaattcaacaatcaaatgatgatg 26907725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 57846 - 57664
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    ||||||||||||| |||||||||||||| |||||||||||||||| |||||| |||| ||||  |||||||||||||||||||| |||||| ||||||||    
T  57846 atttgaaaagatgctttgcatattgttcaatttttccaaaggattgcccactcgataagaagcaattggttttgttgtggatggcagaaggtttccttga 57747  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaat 183  Q
    ||||||||||||||| |||| |   |||||||| ||||||||||| |||| |||||||||||| ||||| |||||||||||||    
T  57746 ttgttctcaaggggggaaaaagttggaggaattaggtgatgattgttttgctgaattgttatcgagatcgttaattcaacaat 57664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 3 - 183
Target Start/End: Complemental strand, 57035 - 56855
Alignment:
Q  3 ttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttgatt 102  Q
    ||||||||||| |||||||||||||| |||||||||||||||| |||||| |||| ||||  |||||||||||||||||||| |||||| ||||||||||    
T  57035 ttgaaaagatgctttgcatattgttcaatttttccaaaggattgcccactcgataagaagcaattggttttgttgtggatggcagaaggtttccttgatt 56936  T
Q  103 gttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaat 183  Q
    ||||||||||||| |||| |   |||||||| ||||||||||| |||| |||||||||||| ||||| |||||||||||||    
T  56935 gttctcaaggggggaaaaagttggaggaattaggtgatgattgttttgctgaattgttatcgagatcgttaattcaacaat 56855  T

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Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 11485672 - 11485866
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    |||| ||||||||||| || ||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||    
T  11485672 atttaaaaagatgtttcgcctattgctcaatttttccaaaggattacccacttgataggaagaaattggttttgttgtggatggcagaaggcttcctgga 11485771  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaatcaaatgatgatg 195  Q
    || || ||| ||   |||| ||   |||||||| || |||||||| |||| |||||||||||| ||||| |||||||||||||||||||||||||    
T  11485772 ttattgtcatggccaaaaagtggtggaggaattcggcgatgattgttttgctgaattgttatctagatcgttaattcaacaatcaaatgatgatg 11485866  T

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Target: chr8; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 44957124 - 44956931
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    |||||||||||||||| || |||||||| ||||||||||||| |||||  |||| || ||| | | |||||||||| ||||||| |||||||||||||||    
T  44957124 atttgaaaagatgtttcgcctattgttctatttttccaaagggttacctgcttgctaagaaaaaaatggttttgttatggatggcagaaggcttccttga 44957025  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaatcaaatgatgat 194  Q
    |  ||||||||| | |||| || | |||||| ||| | ||||||| |||| |||||||||||| ||||||||||||||||||| || |||||||    
T  44957024 tatttctcaaggtgaaaaagtggcggaggaagttgtttatgattgttttgctgaattgttatctagatccttaattcaacaattaagtgatgat 44956931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 4e-46; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 17852358 - 17852165
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    ||||||||| |||||||||||||||||| |||||  ||||||||||| || |||||||||||| |||||||||||||||||||| |||||| ||||| ||    
T  17852358 atttgaaaatatgttttgcatattgttcaattttctcaaaggattactcatttgataggaagaaattggttttgttgtggatggcagaaggattcctcga 17852259  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaatcaaatgatgat 194  Q
     | ||||||||||||||||    | |||||| | ||||| || || |||  ||||||||||||||||||||||||||||||| |||||||||||    
T  17852258 ctattctcaagggggaaaagcagcagaggaagtgggtgacgactgtttttctgaattgttatccagatccttaattcaacaaacaaatgatgat 17852165  T

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Target: chr6 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 31679168 - 31678985
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    ||||||||| |||||| || |||||||| ||||| ||||||||||| || ||||||||||||  | |||||||| |||||||||  ||||||||||||||    
T  31679168 atttgaaaacatgtttcgcttattgttcaattttcccaaaggattatcctcttgataggaagcaaatggttttgctgtggatggctgaaggcttccttga 31679069  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaatc 184  Q
       ||||||||| | ||||   |  |||||| |||||||||| | |||||||||||||||||| ||||| ||||||||||||||    
T  31679068 acattctcaaggagaaaaagcaatggaggaagttggtgatgactactttgttgaattgttatctagatcgttaattcaacaatc 31678985  T

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Target: scaffold0002 (Bit Score: 63; Significance: 1e-27; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 153679 - 153485
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    ||||||||||||||||||| ||||| || |||||||| |||||||  |||||||| | ||||  |||| ||||||| ||||||| |||||||||||| ||    
T  153679 atttgaaaagatgttttgcctattgctcaatttttccgaaggattttccacttgacaagaaggaattgattttgttatggatggcagaaggcttcctaga 153580  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaatcaaatgatgatg 195  Q
      |||||||| |    ||||   | |||||| | ||  |||| | |||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  153579 gcgttctcaacgtaataaaacagctgaggaagtaggccatgactactttattgaattgttatccaggtccttaattcaacaatcaaatgatgatg 153485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 145374 - 145180
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    ||||||||||||||||||| ||||| || |||||||| |||||||  |||||||| | ||||  |||| ||||||| ||||||| |||||||||||| ||    
T  145374 atttgaaaagatgttttgcctattgctcaatttttccgaaggattttccacttgacaagaaggaattgattttgttatggatggcagaaggcttcctaga 145275  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaatcaaatgatgatg 195  Q
       ||||||| |    ||||   | |||||| | ||  |||| | |||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  145274 gcattctcaacgtaataaaacagctgaggaagtaggccatgactactttattgaattgttatccaggtccttaattcaacaatcaaatgatgatg 145180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 135323 - 135129
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    ||||||||||||||||||| ||||| || |||||||| |||||||  ||||| || | ||||  |||| ||||||| ||||||| |||||||||||| ||    
T  135323 atttgaaaagatgttttgcctattgctcaatttttccgaaggattttccactggacaagaaggaattgattttgttatggatggcagaaggcttcctaga 135224  T
Q  101 ttgttctcaagggggaaaaatgaccgaggaatttggtgatgattgctttgttgaattgttatccagatccttaattcaacaatcaaatgatgatg 195  Q
       ||||||| |    ||||   | |||||| | ||  |||| | |||| |||||||||||||||| | ||||||||||||||||||||||||||    
T  135223 gcattctcaacgtaataaaacagctgaggaagtaggccatgactactttattgaattgttatccaggtgcttaattcaacaatcaaatgatgatg 135129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 29837276 - 29837373
Alignment:
Q  3 ttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    |||||||||||||| || |||||||| ||||||||||||||||| | |||||||||||||  |||||||||||||||||||| |||||| ||| ||||    
T  29837276 ttgaaaagatgtttcgcctattgttcaatttttccaaaggattatcaacttgataggaagcaattggttttgttgtggatggcagaaggattcattga 29837373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 29837419 - 29837467
Alignment:
Q  146 ctttgttgaattgttatccagatccttaattcaacaatcaaatgatgat 194  Q
    ||||| ||||||| |||| |||||||||||||||||| || ||||||||    
T  29837419 ctttgctgaattgatatctagatccttaattcaacaagcatatgatgat 29837467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 826536 - 826635
Alignment:
Q  1 atttgaaaagatgttttgcatattgttcgatttttccaaaggattacccacttgataggaagacattggttttgttgtggatggtagaaggcttccttga 100  Q
    |||||||||||||||| |  ||||| || |||||||| |||| ||| || ||||| |  |||   ||||||||||||||||||| |||||||||||||||    
T  826536 atttgaaaagatgtttcgtctattgctcaatttttcccaagggttatccccttgaaaaaaagcatttggttttgttgtggatggcagaaggcttccttga 826635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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