View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14635_low_3 (Length: 564)
Name: NF14635_low_3
Description: NF14635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14635_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 524; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 6 - 548
Target Start/End: Original strand, 37807986 - 37808529
Alignment:
| Q |
6 |
cataggaaccaaaatgggcttatggatccaaaacatagggacttcagtaataatatagtgggtgttccatgtgcaatagcaagcgtttgctctttttctt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37807986 |
cataggaaccaaaatgggcttatggatccaaaacatagggacttcagtaataatatagtgggtgttccatgtgcaatagcaagcgtttgctctttttctt |
37808085 |
T |
|
| Q |
106 |
tatggttaatcatccaggttagcttaattagttatatccatattcctta-ttaaggtcgaatattttatgtgaatatgatgtttgagctttacaggctaa |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
37808086 |
tatggttaatcatccaggttagcttaattagttatatccatattccttaattaaggtcgaatattttttgtgaatatgatgtttgaggtttacaggctaa |
37808185 |
T |
|
| Q |
205 |
gttgaatgaagaatatccatgccatcattcatgctcagcattgatgtgctcaatgggagcagttcaagccattgttgttgctctttgtgtcgatagggat |
304 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37808186 |
gttgaatgaagaatatccattccatcattcatgctcagcattgatgtgctcaatgggagcagttcaagccattgttgttgctctttgtgtcgatagggat |
37808285 |
T |
|
| Q |
305 |
tggaccgaatggaagctgggttacgatatcaggcttctcactatggcttattcggtatgctcgtacaaatttaagaatttaattcatatacattgttagt |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37808286 |
tggaccgaatggaagctgggttacgatatcaggcttctcactatggcttattcggtatgctcgtacaaatttaagaatttaattcatatacattgttagt |
37808385 |
T |
|
| Q |
405 |
caatgcatatgccgtaaatgctcaacatgaactattttgtttaccaaaattgttgttattgaagttgttaaatgtatgtgaatgttaatgcagggtattg |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37808386 |
caatgcatatgccgtaaatgctcaacatgaactattttgtttaccaaaattgttgttattgaagttgttaaatgtatgtgaatgttaatgcagggtattg |
37808485 |
T |
|
| Q |
505 |
tggtctctgggtcagtggttattgttatttcttggtgtataagg |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37808486 |
tggtctctgggtcagtggttattgttatttcttggtgtataagg |
37808529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 197 - 369
Target Start/End: Original strand, 37782801 - 37782973
Alignment:
| Q |
197 |
caggctaagttgaatgaagaatatccatgccatcattcatgctcagcattgatgtgctcaatgggagcagttcaagccattgttgttgctctttgtgtcg |
296 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||||||||||||||||| ||||| |||||| ||| |||||||||||||| ||||||||||| ||| |
|
|
| T |
37782801 |
caggctaagttgaatgaagaatttccagaacacaattcatgctcagcattggtgtgcacaatggcagcgattcaagccattgtttttgctctttgtatcg |
37782900 |
T |
|
| Q |
297 |
atagggattggaccgaatggaagctgggttacgatatcaggcttctcactatggcttattcggtatgctcgta |
369 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
37782901 |
atagagattggaatcaatggaagctcggttacgatatcagacttcttactattgcttattcggtatgctcgta |
37782973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 207 - 377
Target Start/End: Original strand, 37792161 - 37792331
Alignment:
| Q |
207 |
tgaatgaagaatatccatgccatcattcatgctcagcattgatgtgctcaatgggagcagttcaagccattgttgttgctctttgtgtcgatagggattg |
306 |
Q |
| |
|
||||| ||||||||||| ||||||| ||| || | || ||||||| ||||||||||| |||||||||| ||| ||||| ||||||| || || |||| |
|
|
| T |
37792161 |
tgaataaagaatatccaagccatcactcaagcactgctttgatgtcgacaatgggagcaattcaagccatcgtttttgctatttgtgtggacagagattt |
37792260 |
T |
|
| Q |
307 |
gaccgaatggaagctgggttacgatatcaggcttctcactatggcttattcggtatgctcgtacaaattta |
377 |
Q |
| |
|
|||| |||||||||| |||||| ||||||| ||||||| | ||||||||||||||||| ||||| |||| |
|
|
| T |
37792261 |
gacccaatggaagcttggttacaatatcagacttctcatggtagcttattcggtatgctcatacaacttta |
37792331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 198 - 366
Target Start/End: Original strand, 37801844 - 37802012
Alignment:
| Q |
198 |
aggctaagttgaatgaagaatatccatgccatcattcatgctcagcattgatgtgctcaatgggagcagttcaagccattgttgttgctctttgtgtcga |
297 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||||| ||| || | || ||||||| ||||||||||| |||||||||| ||| ||||| ||||||| || |
|
|
| T |
37801844 |
aggctaaaatgaataaagaatatccaagccatcactcaagcactgctttgatgtcgacaatgggagcaattcaagccatcgtttttgctatttgtgtgga |
37801943 |
T |
|
| Q |
298 |
tagggattggaccgaatggaagctgggttacgatatcaggcttctcactatggcttattcggtatgctc |
366 |
Q |
| |
|
|| |||| |||| |||||||||| |||||| ||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
37801944 |
cagagatttgacccaatggaagcttggttacaatatcagacttctcatggtagcttattcggtatgctc |
37802012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 467 - 546
Target Start/End: Original strand, 37783204 - 37783283
Alignment:
| Q |
467 |
agttgttaaatgtatgtgaatgttaatgcagggtattgtggtctctgggtcagtggttattgttatttcttggtgtataa |
546 |
Q |
| |
|
|||||||||||| | |||||||||| ||||||| ||||| | |||||| | |||| || |||||||||||||||| |||| |
|
|
| T |
37783204 |
agttgttaaatgcaagtgaatgttattgcagggaattgtagcctctggattagtgattgttgttatttcttggtgcataa |
37783283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 37800634 - 37800756
Alignment:
| Q |
11 |
gaaccaaaatgggcttatggatccaaaacatagggacttcagtaataatatagtgggtgttccatgtgcaatagcaagcgtttgctctttttctttatgg |
110 |
Q |
| |
|
|||||||||||||| |||||| || ||||| ||||| |||||||| || |||| |||| |||||| |||| |||| |||| ||||||| ||||| |
|
|
| T |
37800634 |
gaaccaaaatgggcatatggagccgcaacatgcagactttagtaataaactattgggcgttctatgtgctataggaagcagctgctttttttctctatgg |
37800733 |
T |
|
| Q |
111 |
ttaatcatccaggttagcttaat |
133 |
Q |
| |
|
|| ||||| |||||||||||||| |
|
|
| T |
37800734 |
tttatcattcaggttagcttaat |
37800756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 37781415 - 37781479
Alignment:
| Q |
64 |
tgggtgttccatgtgcaatagcaagcgtttgctctttttctttatggttaatcatccaggttagc |
128 |
Q |
| |
|
||||| |||||||||| |||| ||| ||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
37781415 |
tgggtattccatgtgccataggaagttgttgctctttttctttgtggttaattatccaggttagc |
37781479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 37789794 - 37789917
Alignment:
| Q |
11 |
gaaccaaaatgggcttatggatccaaaacatagggacttcagtaataatatagtgggtgttccatgtgcaatagcaagcgtttgctctttttctttatgg |
110 |
Q |
| |
|
|||||||||||||| |||||| | | ||||| |||||||||||||| || |||| ||| || ||| |||| |||| |||||||||||| | ||| |
|
|
| T |
37789794 |
gaaccaaaatgggcatatggaactacaacatgcagacttcagtaataaactattgggatttctatatgccataggaagcagctgctctttttctctttgg |
37789893 |
T |
|
| Q |
111 |
ttaatcatccaggttagcttaatt |
134 |
Q |
| |
|
|| ||||| ||||||||||||||| |
|
|
| T |
37789894 |
tttatcattcaggttagcttaatt |
37789917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University