View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14635_low_4 (Length: 539)
Name: NF14635_low_4
Description: NF14635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14635_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 515; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Original strand, 910999 - 911521
Alignment:
| Q |
1 |
cccagtaaagtcagccactccaattacaccacctaaaacaactacatctgaaggccacaagaaccagctttcatcagaatttgatctaaccatatctcct |
100 |
Q |
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| T |
910999 |
cccagtaaagtcagccactccaattacaccacctaaaacaactacatctgaaggccacaagaaccagctttcatcagaatttgatctaaccatatctcct |
911098 |
T |
|
| Q |
101 |
aaaaacactccagagtctgctttgaagagcccttcgtctgtattgaatccaccgccctccctaaagagaactatccgggactactttgtagcatcttctt |
200 |
Q |
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| T |
911099 |
aaaaacactccagagtctgctttgaagagcccttcgtctgtattgaatccaccgccctccctaaagagaactatccgggactactttgtagcatcttctt |
911198 |
T |
|
| Q |
201 |
gaatccacctttgcttattagctttcctatacacacgcttaatatgaaccaagtcttgagcaagtaataatcttattcttttcaaaagtctccacccaaa |
300 |
Q |
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| T |
911199 |
gaatccacctttgcttattagctttcctatacacacgcttaatatgaaccaagtcttgagcaagtaataatcttattcttttcaaaagtctccacccaaa |
911298 |
T |
|
| Q |
301 |
acacttccaacctgtgaattgtttaaacatctcgtgacaacatcaaagtcgacatgcagttccagctgggaaatatttcgagttttagtcatactcaagc |
400 |
Q |
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| T |
911299 |
acacttccaacctgtgaattgtttaaacatctcgtgacaacatcaaagtcgacatgcagttccagctgggaaatatttcgagttttagtcatactcaagc |
911398 |
T |
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| Q |
401 |
cttctaataccccctacaattcaacgatatatgcagtagaaggtcccaaatgcttggcgaatccgcaaatccaattatctacactgtctctaatgattcc |
500 |
Q |
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| T |
911399 |
cttctgataccccctacaattcaacgatatatgcagtagaaggtcccaaatgcttggtgaatccgcaaatccaattatctacactgtctctaatgattcc |
911498 |
T |
|
| Q |
501 |
tttacaacatgctatgtttccat |
523 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
911499 |
tttacaacatgctatgtttccat |
911521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 660949 - 660744
Alignment:
| Q |
1 |
cccagtaaagtcagccactccaattacaccacctaaaacaactacatctgaaggccacaagaaccagctttcatcagaatttgatctaaccatatctcct |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
660949 |
cccagtaaagtcagccactccaatcacaccacctaaaacaactacatctgaagggcacaagaaccagcttttatcagaatttgatctaaccatatctcct |
660850 |
T |
|
| Q |
101 |
aaaaacactccagagtctgctttgaagagcccttcgtctgtattgaatccaccgccctccctaaagagaactatccgggactactttgtagcatcttctt |
200 |
Q |
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| T |
660849 |
aaaaacactccagagtctgctttgaagagcccttcgtctgtattgaatccaccgccctccctaaagagaactatccgggactactttgtagcatcttctt |
660750 |
T |
|
| Q |
201 |
gaatcc |
206 |
Q |
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|||||| |
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| T |
660749 |
gaatcc |
660744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 658333 - 658283
Alignment:
| Q |
155 |
ccctccctaaagagaactatccgggactactttgtagcatcttcttgaatc |
205 |
Q |
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||||||||| | ||||||||||| ||||||||||||||||||||||||||| |
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| T |
658333 |
ccctccctataaagaactatccgagactactttgtagcatcttcttgaatc |
658283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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