View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14635_low_5 (Length: 510)
Name: NF14635_low_5
Description: NF14635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14635_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 38390904 - 38390624
Alignment:
| Q |
18 |
agatgggtgggtggggttctttaacttgttagatagtaagaagaaattctaccaaaaacattttttatattatttctattaaggttggtccaatgtattt |
117 |
Q |
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| T |
38390904 |
agatgggtgggtggggttctttaacttgttagatagtaagaagaaattctaccaaaaacattttttatattatttctattaaggttggtccaatgtattt |
38390805 |
T |
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| Q |
118 |
-----------------tttaaattgagaacataaaaattaacaacattaaatatataattttaatctaa----tatcagacattaaatatgagtatcgt |
196 |
Q |
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| T |
38390804 |
gtaagcttaaattaaattttaaattgagaacataaaaattaagaacattaaatatataattttaatctaagacatatcagacactaaatatgagtatcgc |
38390705 |
T |
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| Q |
197 |
tctatgtcggagttcaaacatttattggttgggttgtgcgagtataactctttccgttaaactcaaacccattagttcaag |
277 |
Q |
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| T |
38390704 |
tctatgtcagaatttaaacatttattcgtcggattgtgcgagtataactctttccgttaaactcaaacccattagttcaag |
38390624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 383 - 491
Target Start/End: Complemental strand, 38390518 - 38390410
Alignment:
| Q |
383 |
caattgttaaatgattgtttgctaagtgatcgttttaagtgttttactatcacaaaagtttactcgttaattaagatattttaacgcctttcatttctat |
482 |
Q |
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| T |
38390518 |
caattattaaatgattgtttgctaagtgatcgttttaagtgttttactatctcaaaagtttactcgttaattaagatattttaacgcctttcatttctat |
38390419 |
T |
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| Q |
483 |
atgtcacct |
491 |
Q |
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| T |
38390418 |
atgtcacct |
38390410 |
T |
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