View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14635_low_6 (Length: 486)

Name: NF14635_low_6
Description: NF14635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14635_low_6
NF14635_low_6
[»] chr2 (8 HSPs)
chr2 (125-475)||(6953305-6953659)
chr2 (10-98)||(6953676-6953764)
chr2 (185-230)||(13861117-13861162)
chr2 (199-230)||(5536323-5536354)
chr2 (397-456)||(26754416-26754475)
chr2 (350-430)||(44093739-44093821)
chr2 (183-229)||(3272532-3272578)
chr2 (199-231)||(36198824-36198856)
[»] chr4 (5 HSPs)
chr4 (349-456)||(37111835-37111942)
chr4 (350-456)||(47568431-47568540)
chr4 (180-231)||(7268382-7268433)
chr4 (179-225)||(39939672-39939718)
chr4 (185-230)||(29693043-29693088)
[»] chr5 (8 HSPs)
chr5 (350-453)||(35567805-35567909)
chr5 (361-429)||(38843829-38843897)
chr5 (350-386)||(32278941-32278977)
chr5 (354-453)||(31948609-31948710)
chr5 (179-230)||(17150614-17150665)
chr5 (350-431)||(8940929-8941011)
chr5 (185-231)||(11067234-11067280)
chr5 (199-231)||(7155190-7155222)
[»] chr1 (7 HSPs)
chr1 (349-452)||(25081274-25081378)
chr1 (349-456)||(36801951-36802059)
chr1 (349-388)||(10596373-10596412)
chr1 (182-231)||(43363828-43363876)
chr1 (185-230)||(43449541-43449586)
chr1 (177-231)||(43800635-43800689)
chr1 (350-437)||(43425688-43425776)
[»] chr8 (3 HSPs)
chr8 (350-456)||(33355947-33356054)
chr8 (186-228)||(34198227-34198269)
chr8 (181-231)||(43468173-43468223)
[»] chr3 (5 HSPs)
chr3 (184-231)||(11086272-11086318)
chr3 (354-454)||(17357193-17357295)
chr3 (165-230)||(35642591-35642658)
chr3 (179-216)||(2259043-2259080)
chr3 (179-230)||(33934209-33934261)
[»] scaffold0648 (1 HSPs)
scaffold0648 (363-456)||(990-1086)
[»] scaffold0271 (1 HSPs)
scaffold0271 (363-456)||(15370-15466)
[»] chr6 (1 HSPs)
chr6 (186-227)||(29021677-29021718)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 125 - 475
Target Start/End: Complemental strand, 6953659 - 6953305
Alignment:
Q  125 ctatcaatccatactatgaaagtcttacacaaccacaagtatttggacacatc--------gcacacaaaaatacatataaattaattattttaaaaata 216  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||||||        ||||||||||||||||||||||||||||||||||||||     
T  6953659 ctatcaatccatactatgaaagtcttacacgaccaaaagtatttggacacatcatttagaggcacacaaaaatacatataaattaattattttaaaaatg 6953560  T
Q  217 tatattatttaattcnnnnnnnnnnnnaccttttctcaaatgtgtgtataaatagagaacaattcttacataagcacaatatcaaatcaaatttatttgg 316  Q
     ||||||||||||||            ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  6953559 gatattatttaattcatttttttttttaccttttctcaaatgtgtgtataaatagagaacaattattacatgagcacaatatcaaatcaaatttatttgg 6953460  T
Q  317 gggcc-atagacaaatgtnnnnnnnnnnnnnnngaaattatttaatcacatcatttaaatctattctcttttattcttttcatttatggatgtgtgtcca 415  Q
    ||||| ||| ||||||||               ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6953459 gggcccatacacaaatgtaaaaaaattaaaagagaaattatttaatgacatcatttaaatctattctcttttattcttttcatttatgaatgtgtgtcca 6953360  T
Q  416 aataaaattaatttgggattgtatctaagttagaatttctcatgaatagaatgttctatc 475  Q
    ||||||||||||||||| |||||||     ||||||||| ||| ||||||||||||||||    
T  6953359 aataaaattaatttggggttgtatc-----tagaatttcccataaatagaatgttctatc 6953305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 6953764 - 6953676
Alignment:
Q  10 agcagagaaagagagaagaaatatttggttgctaagaatgcaaaacaagaagaaatttacgtgtttattggcttttgtagtgcatacta 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6953764 agcagagaaagagagaagaaatatttggttgctaagaatgcaaaacaagaagaaatttacgtgtttattggcttttgtagtgcatacta 6953676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 13861162 - 13861117
Alignment:
Q  185 aaaatacatataaattaattattttaaaaatatatattatttaatt 230  Q
    ||||||||||||| |||| |||||| ||||||||||||||||||||    
T  13861162 aaaatacatataatttaaatatttttaaaatatatattatttaatt 13861117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 230
Target Start/End: Original strand, 5536323 - 5536354
Alignment:
Q  199 ttaattattttaaaaatatatattatttaatt 230  Q
    ||||||||||||||||||||||||||||||||    
T  5536323 ttaattattttaaaaatatatattatttaatt 5536354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 456
Target Start/End: Original strand, 26754416 - 26754475
Alignment:
Q  397 atttatggatgtgtgtccaaataaaattaatttgggattgtatctaagttagaatttctc 456  Q
    |||||||  |||||| |||||||||||||||||  ||| |||||||| ||||||||||||    
T  26754416 atttatgagtgtgtgcccaaataaaattaatttaagatggtatctaaattagaatttctc 26754475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 430
Target Start/End: Original strand, 44093739 - 44093821
Alignment:
Q  350 aaattatttaatcacatcatttaaatctattctctttta--ttcttttcatttatggatgtgtgtccaaataaaattaatttg 430  Q
    |||||||||| | |||||||||||||||||| |||||||  || ||||||||| |  ||||||| |||||  |||||||||||    
T  44093739 aaattatttagtaacatcatttaaatctattatcttttaattttttttcatttgtaaatgtgtgcccaaaataaattaatttg 44093821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 3272532 - 3272578
Alignment:
Q  183 caaaaatacatataaattaattattttaaaaatatatattatttaat 229  Q
    |||||||| |||| | |||||||||| ||||||||||||||||||||    
T  3272532 caaaaatatatattatttaattatttcaaaaatatatattatttaat 3272578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 36198824 - 36198856
Alignment:
Q  199 ttaattattttaaaaatatatattatttaattc 231  Q
    ||||||||||| |||||||||||||||||||||    
T  36198824 ttaattattttgaaaatatatattatttaattc 36198856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 349 - 456
Target Start/End: Complemental strand, 37111942 - 37111835
Alignment:
Q  349 gaaattatttaatcacatcatttaaatctattctcttttattcttttcatttatggatgtgtgtccaaataaaattaatttgggattgtatctaagttag 448  Q
    ||||||||||||||||||||||||||||| || ||||||| | |||| ||||||   || |||||||| ||||||||||||||| ||||  | ||||||     
T  37111942 gaaattatttaatcacatcatttaaatcttttttcttttaatttttttatttataagtgcgtgtccaattaaaattaatttgggtttgtgccgaagttaa 37111843  T
Q  449 aatttctc 456  Q
    ||||||||    
T  37111842 aatttctc 37111835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 456
Target Start/End: Original strand, 47568431 - 47568540
Alignment:
Q  350 aaattatttaatcacatcatttaaatctattctcttttattctttt---catttatggatgtgtgtccaaataaaattaatttgggattgtatctaagtt 446  Q
    |||||||||| |||||||| |||||||||| ||||||| || ||||   ||||| |   ||||||| |||||||||||||||| || |||| || |||||    
T  47568431 aaattatttagtcacatcaattaaatctatcctctttttttttttttttcatttgtaagtgtgtgttcaaataaaattaatttagggttgtgtccaagtt 47568530  T
Q  447 agaatttctc 456  Q
    ||||||||||    
T  47568531 agaatttctc 47568540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 7268433 - 7268382
Alignment:
Q  180 acacaaaaatacatataaattaattattttaaaaatatatattatttaattc 231  Q
    |||||||||||||||| ||| |||||||||||||||| ||||| ||||||||    
T  7268433 acacaaaaatacatatcaataaattattttaaaaataaatattttttaattc 7268382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 39939672 - 39939718
Alignment:
Q  179 cacacaaaaatacatataaattaattattttaaaaatatatattatt 225  Q
    |||| |||||||||||||| |||||||||||||||||||| ||||||    
T  39939672 cacataaaaatacatataatttaattattttaaaaatataaattatt 39939718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 29693088 - 29693043
Alignment:
Q  185 aaaatacatataaattaattattttaaaaatatatattatttaatt 230  Q
    ||||||||||| | |||||||||||| |||||||||||||||||||    
T  29693088 aaaatacatattatttaattattttataaatatatattatttaatt 29693043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 350 - 453
Target Start/End: Original strand, 35567805 - 35567909
Alignment:
Q  350 aaattatttaatcacatcatttaaatctattctct-tttattcttttcatttatggatgtgtgtccaaataaaattaatttgggattgtatctaagttag 448  Q
    ||||||||||||||||||||| ||||| ||||||| || ||| ||||||||| ||| | ||||| || || ||||||||||| | |||| ||||||||||    
T  35567805 aaattatttaatcacatcattcaaatccattctctcttaatttttttcatttgtgggtatgtgttcacatgaaattaatttgaggttgtgtctaagttag 35567904  T
Q  449 aattt 453  Q
    |||||    
T  35567905 aattt 35567909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 361 - 429
Target Start/End: Original strand, 38843829 - 38843897
Alignment:
Q  361 tcacatcatttaaatctattctcttttattcttttcatttatggatgtgtgtccaaataaaattaattt 429  Q
    |||||||||||||||||||||||||||| | ||||||||| ||  |||||| ||||||||| |||||||    
T  38843829 tcacatcatttaaatctattctcttttaattttttcatttgtgagtgtgtggccaaataaatttaattt 38843897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 32278977 - 32278941
Alignment:
Q  350 aaattatttaatcacatcatttaaatctattctcttt 386  Q
    |||||||||||||||||||||||||||||||||||||    
T  32278977 aaattatttaatcacatcatttaaatctattctcttt 32278941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 453
Target Start/End: Complemental strand, 31948710 - 31948609
Alignment:
Q  354 tatttaatcacatcatttaaatctattctctttta--ttcttttcatttatggatgtgtgtccaaataaaattaatttgggattgtatctaagttagaat 451  Q
    |||||| ||||||||||||||||||||||||||||  || ||||||||| ||   ||  | ||||||||||||||||| || || |||| |||||| |||    
T  31948710 tatttattcacatcatttaaatctattctcttttaattttttttcatttgtgagcgttcgcccaaataaaattaatttagggttttatccaagttaaaat 31948611  T
Q  452 tt 453  Q
    ||    
T  31948610 tt 31948609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 17150665 - 17150614
Alignment:
Q  179 cacacaaaaatacatataaattaattattttaaaaatatatattatttaatt 230  Q
    |||| ||||| |||||| | ||||||||||||||||||| ||||||||||||    
T  17150665 cacataaaaacacatatcatttaattattttaaaaatatttattatttaatt 17150614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 431
Target Start/End: Original strand, 8940929 - 8941011
Alignment:
Q  350 aaattatttaatcacatcatttaaatctattctctttta-ttcttttcatttatggatgtgtgtccaaataaaattaatttgg 431  Q
    |||| ||||| ||||||||||||| ||| || ||||||| || |||||||||| |  | |||||| |||||||||||||||||    
T  8940929 aaatgatttagtcacatcatttaattcttttttcttttattttttttcatttacgagtatgtgtctaaataaaattaatttgg 8941011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 11067234 - 11067280
Alignment:
Q  185 aaaatacatataaattaattattttaaaaatatatattatttaattc 231  Q
    ||||||||||| | |||||||||||||||||||  ||||||||||||    
T  11067234 aaaatacatatcatttaattattttaaaaatattcattatttaattc 11067280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 7155222 - 7155190
Alignment:
Q  199 ttaattattttaaaaatatatattatttaattc 231  Q
    |||||||||| ||||||||||||||||||||||    
T  7155222 ttaattatttcaaaaatatatattatttaattc 7155190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 452
Target Start/End: Complemental strand, 25081378 - 25081274
Alignment:
Q  349 gaaattatttaatcacatcatttaaatctattctctttt-attcttttcatttatggatgtgtgtccaaataaaattaatttgggattgtatctaagtta 447  Q
    |||| ||||||||||||  |||||||||||||||||||| ||| |||||| || ||  |||||||| ||||||||||||||| || |||| || ||||||    
T  25081378 gaaaatatttaatcacagtatttaaatctattctcttttaatttttttcaattgtgagtgtgtgtcaaaataaaattaatttagggttgtgtccaagtta 25081279  T
Q  448 gaatt 452  Q
    |||||    
T  25081278 gaatt 25081274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 456
Target Start/End: Original strand, 36801951 - 36802059
Alignment:
Q  349 gaaattatttaatcacatcatttaaatctattctctttta-ttcttttcatttatggatgtgtgtccaaataaaattaatttgggattgtatctaagtta 447  Q
    |||| |||||| ||||||||||||||||||||||||||||  | ||||||||| || ||||||||||||||||| || ||||| | |||| |  ||| ||    
T  36801951 gaaagtatttagtcacatcatttaaatctattctcttttacattttttcatttgtgaatgtgtgtccaaataaatttgatttgagtttgtgttcaagata 36802050  T
Q  448 gaatttctc 456  Q
    |||||||||    
T  36802051 gaatttctc 36802059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 388
Target Start/End: Original strand, 10596373 - 10596412
Alignment:
Q  349 gaaattatttaatcacatcatttaaatctattctctttta 388  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  10596373 gaaattatttaaccacatcatttaaatctattctctttta 10596412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 43363876 - 43363828
Alignment:
Q  182 acaaaaatacatataaattaattattttaaaaatatatattatttaattc 231  Q
    |||||||||||||||| ||||||| ||||||||||| |||||||||||||    
T  43363876 acaaaaatacatataatttaatta-tttaaaaatatttattatttaattc 43363828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 43449586 - 43449541
Alignment:
Q  185 aaaatacatataaattaattattttaaaaatatatattatttaatt 230  Q
    ||||||||||| | |||||||||||||||||| |||||||||||||    
T  43449586 aaaatacatatcatttaattattttaaaaatacatattatttaatt 43449541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 43800635 - 43800689
Alignment:
Q  177 cgcacacaaaaatacatataaattaattattttaaaaatatatattatttaattc 231  Q
    |||||| |||||||||||| ||| |||| ||||||||||| | ||||||||||||    
T  43800635 cgcacataaaaatacatatcaatcaattgttttaaaaatacacattatttaattc 43800689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 437
Target Start/End: Original strand, 43425688 - 43425776
Alignment:
Q  350 aaattatttaatcacatcatttaaatctattctctttt-attcttttcatttatggatgtgtgtccaaataaaattaatttgggattgt 437  Q
    |||||||||| ||| |||||||||||| || ||||||| | | ||||||||| |   |||||||| |||| ||||||||||||| ||||    
T  43425688 aaattatttagtcatatcatttaaatccatgctcttttaaattttttcatttgtaagtgtgtgtctaaattaaattaatttggggttgt 43425776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 350 - 456
Target Start/End: Complemental strand, 33356054 - 33355947
Alignment:
Q  350 aaattatttaatcacatcatttaaatctattctctttt-attcttttcatttatggatgtgtgtccaaataaaattaatttgggattgtatctaagttag 448  Q
    |||||||||| ||||||||||||||||||||||||||| ||| || |||||| || || |||| | ||||| | |||||||||| ||||  | |||||||    
T  33356054 aaattatttagtcacatcatttaaatctattctcttttaatttttatcatttgtgaatatgtgcctaaatagatttaatttggggttgtgaccaagttag 33355955  T
Q  449 aatttctc 456  Q
    ||||||||    
T  33355954 aatttctc 33355947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 34198227 - 34198269
Alignment:
Q  186 aaatacatataaattaattattttaaaaatatatattatttaa 228  Q
    ||||| |||||| |||||||||| |||||||||||||||||||    
T  34198227 aaatatatataatttaattatttaaaaaatatatattatttaa 34198269  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 43468173 - 43468223
Alignment:
Q  181 cacaaaaatacatataaattaattattttaaaaatatatattatttaattc 231  Q
    |||| |||||||||| | |||||||||||||||||||| | ||||||||||    
T  43468173 cacataaatacatatcatttaattattttaaaaatatacaatatttaattc 43468223  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 11086318 - 11086272
Alignment:
Q  184 aaaaatacatataaattaattattttaaaaatatatattatttaattc 231  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||    
T  11086318 aaaaatacatacaaat-aattattttaaaaatatatattatttaattc 11086272  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 454
Target Start/End: Complemental strand, 17357295 - 17357193
Alignment:
Q  354 tatttaatcacatcatttaaatctattctctttta--ttcttttcatttatggatgtgtgtccaaataaaattaatttgggattgtatctaagttagaat 451  Q
    |||||| |||||||||||||||| ||| |||||||  || ||||||| |  | ||||||| |||||| ||||||||||||| |||| |  ||||||||||    
T  17357295 tatttagtcacatcatttaaatccattatcttttaattttttttcatgtgcgaatgtgtgcccaaatgaaattaatttggggttgtgttcaagttagaat 17357196  T
Q  452 ttc 454  Q
    |||    
T  17357195 ttc 17357193  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 35642591 - 35642658
Alignment:
Q  165 atttggacaca-tcgcacacaaaaatacatataaat--taattattttaaaaatatatattatttaatt 230  Q
    ||||||||||| ||||||| |||||||||||||| |  ||||||||||||||||||||| |||||||||    
T  35642591 atttggacacactcgcaca-aaaaatacatataattaataattattttaaaaatatataatatttaatt 35642658  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 2259080 - 2259043
Alignment:
Q  179 cacacaaaaatacatataaattaattattttaaaaata 216  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  2259080 cacacaaaagtacatataatttaattattttaaaaata 2259043  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 33934261 - 33934209
Alignment:
Q  179 cacacaaaaatacatataaattaattatttta-aaaatatatattatttaatt 230  Q
    |||||||||||| || ||| |||||||||||| |||||||||| |||||||||    
T  33934261 cacacaaaaatatatttaatttaattattttaaaaaatatatactatttaatt 33934209  T

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Target: scaffold0648 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 456
Target Start/End: Complemental strand, 1086 - 990
Alignment:
Q  363 acatcatttaaatctattctcttttattcttttc---atttatggatgtgtgtccaaataaaattaatttgggattgtatctaagttagaatttctc 456  Q
    |||||||| ||||  ||||||||||||| |||||   |||||||  ||||||| |||||  |||||||||||| |||| || |||||||||||||||    
T  1086 acatcattcaaattcattctcttttatttttttcttcatttatgagtgtgtgttcaaatggaattaatttggggttgtgtccaagttagaatttctc 990  T

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Target: scaffold0271 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 456
Target Start/End: Complemental strand, 15466 - 15370
Alignment:
Q  363 acatcatttaaatctattctcttttattcttttc---atttatggatgtgtgtccaaataaaattaatttgggattgtatctaagttagaatttctc 456  Q
    |||||||| ||||  ||||||||||||| |||||   |||||||  ||||||| |||||  |||||||||||| |||| || |||||||||||||||    
T  15466 acatcattcaaattcattctcttttatttttttcttcatttatgagtgtgtgttcaaatggaattaatttggggttgtgtccaagttagaatttctc 15370  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 29021677 - 29021718
Alignment:
Q  186 aaatacatataaattaattattttaaaaatatatattattta 227  Q
    ||||||||||||||||||||||| || ||||||||| |||||    
T  29021677 aaatacatataaattaattatttcaataatatatatcattta 29021718  T

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