View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14635_low_7 (Length: 479)
Name: NF14635_low_7
Description: NF14635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14635_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Original strand, 33117193 - 33117646
Alignment:
| Q |
18 |
gaacataaccaaaagattctgaaagtcccacactcttattcacgagatcaaacaacaaaacccaataatannnnnnnnaagacgtcaaatctcgaaccaa |
117 |
Q |
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| T |
33117193 |
gaacgtaaccaaaaggttctgaaagtcccacactcttattcacgagatcaaacaacaaaacccaatactattttttttaagacgtcaaatctcgaaccaa |
33117292 |
T |
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| Q |
118 |
ggaccacaagacctagtaacataaaaccacatcaaaccttaatgttttccatttgcattggtcttattgtggcaacacttatagctgatgaaaatctcca |
217 |
Q |
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| T |
33117293 |
ggaccacaagacctagtaacataaaaccacatcaaaccctaatgttttccatttgcattggtcttattgtggcaacacttatagctgatgaaaatctcca |
33117392 |
T |
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| Q |
218 |
tggtactaggacaatcaggacattttatagtctcaggtaactttccagcaacaataggaatttcaaggtgcgagcaacgatgagtgacacgagcaacatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33117393 |
tggtactaggacaatcaggacattttatagtctcaggtaactttccagcaacaataggaatttcaaggtgcgagcaacgatgagtgacacgagcaacatt |
33117492 |
T |
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| Q |
318 |
ggtgtgatactcagtgaatgcaaattcaaatcctttcttaatcacaacatctttccatttctcaaattcagccacagttttgagaattgttgtaccatga |
417 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33117493 |
ggtgtgatactcggtgaatgcaaattcaaatcctttcttaatcacaacatctttccatttctcaaattcagccacagttttgagaattgttgtaccatga |
33117592 |
T |
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| Q |
418 |
ccactcaacacaacagatggtcctttgctaaggagagcccaaccggtttcattt |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33117593 |
ccactcaacacaacagatggtcctttgctaaggagagcccaaccggtttcattt |
33117646 |
T |
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