View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14636_high_10 (Length: 231)
Name: NF14636_high_10
Description: NF14636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14636_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 32 - 217
Target Start/End: Complemental strand, 27514020 - 27513837
Alignment:
| Q |
32 |
aatgaaggaactgctctgtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactcttcaaaagaagttttagaaacgtgctaagt |
131 |
Q |
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| T |
27514020 |
aatgaaggaaccgctccgtcctccgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactcgtcagaagaagttttagaaacatgctaagt |
27513921 |
T |
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| Q |
132 |
cgaaagctcgcgatgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctcactggatggctgttgttgtttt |
217 |
Q |
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| T |
27513920 |
cgaaagctcacgatgctactattgaaagagctatcgagctcggtgaagaggtt--ctctctctcactgaatggctgttgttgtttt |
27513837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 49 - 195
Target Start/End: Original strand, 8674890 - 8675040
Alignment:
| Q |
49 |
gtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactct----tcaaaagaagttttagaaacgtgctaagtcgaaagctcgcga |
144 |
Q |
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| T |
8674890 |
gtccttcaatgattaagaacaaagaaaaacgatctgaaattcatgctaaactcaagcatcagaagaagcttgaaaaacgcgctaagtctaatgctcgtga |
8674989 |
T |
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| Q |
145 |
tgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctc |
195 |
Q |
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| T |
8674990 |
tgctgctgttaaaagagctatcgagctcggtgaagaggttcactctctctc |
8675040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 124 - 217
Target Start/End: Original strand, 39209906 - 39209999
Alignment:
| Q |
124 |
tgctaagtcgaaagctcgcgatgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctcactggatggctgttgttgtttt |
217 |
Q |
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| T |
39209906 |
tgctaagtcgaaagctcgcgatgctgctattgaaagagctatcgagctcggtgaagaggttcactctctctcactgaatggatgttgttgtttt |
39209999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 39209834 - 39209911
Alignment:
| Q |
20 |
gacggaaaccgaaatgaaggaactgctctgtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaa |
97 |
Q |
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| T |
39209834 |
gacggaaaccgaaatgaaggaactgctccgtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaa |
39209911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 52 - 195
Target Start/End: Complemental strand, 24037194 - 24037047
Alignment:
| Q |
52 |
cttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactct----tcaaaagaagttttagaaacgtgctaagtcgaaagctcgcgatgc |
147 |
Q |
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| T |
24037194 |
cttcgatgattaagaaaaaaggaaaacgatctgaaattcatgctaaactcaagcgtcagaagaagcttgagaaacacgctaagtcgaaagctcgcgatgt |
24037095 |
T |
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| Q |
148 |
tgttattgaaagagctatcgagctcggtgaagaggttcactctctctc |
195 |
Q |
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|| | || |||| ||||||||| ||||||||||||||| ||||||||| |
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| T |
24037094 |
tgctgttaaaagcgctatcgagatcggtgaagaggttcgctctctctc |
24037047 |
T |
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