View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14636_low_1 (Length: 466)
Name: NF14636_low_1
Description: NF14636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14636_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 3373940 - 3374390
Alignment:
| Q |
1 |
cttccatggagattattctttctttgtgatcgtgcacgtatcttgattgaaatagttgtgaaggaggttcaagaatagtttattttgttgttcggaatgt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3373940 |
cttccatggagattattctttctttgtgatcgtgcacgtatcttgattgaaacagttgtgaaggaggttcaagaatagtttattttgttgttcggaatgt |
3374039 |
T |
|
| Q |
101 |
tcaatattgtaatattaatatatatgaagtgtcttggtgatgcttgcatcgacttaagatataattgtaaatgatgcttcataatagtgtgattatttac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3374040 |
tcaatattgtaatattaatatatatgaagtgtcttggtgatacttgcatcgacttaagatataattgtaaatgatgcttcataatagtgtgattatttac |
3374139 |
T |
|
| Q |
201 |
ccctnnnnnnnnnnnnctagtgtgattatttagtgaaagttctttcttcttttgctttcaggccaacttcttgcaacctcagttggtgctgctcttacac |
300 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3374140 |
ccctaaaaaataaaaactagtgtgattatttagtgaaagttctttcttcttttgctttcaggccaacttcttgcaacctcagttggtgctgctcttacac |
3374239 |
T |
|
| Q |
301 |
ctcatattatcattgttaatgctggagaggtaatatcattttacggattttcatgatgcgaagcaattctatgtactgtaatattcattattagacaagt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3374240 |
ctcatattatcattgttaatgctggagaggtaatatcattttacggattttcatgatgcgaagcaattctatgtactgtaatattcattattagacaagt |
3374339 |
T |
|
| Q |
401 |
gccacaatattttgtggtgccccatatcctgatatttttaattggtaaaag |
451 |
Q |
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| T |
3374340 |
gccacaatattttgtggtggcacatatcctgatatttttaattggtaaaag |
3374390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 223 - 401
Target Start/End: Original strand, 3402288 - 3402463
Alignment:
| Q |
223 |
tgattatttagtgaaagttctttcttcttttgctttcaggccaacttcttgcaacctcagttggtgctgctcttacacctcatattatcattgttaatgc |
322 |
Q |
| |
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|||||||||||||||||| ||||||| |||| ||||||||| | | ||||| ||||||| ||||| || |||||||||||||||||||||| ||||| |
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| T |
3402288 |
tgattatttagtgaaagtgctttctttttttc---tcaggccaattgcctgcaagctcagttagtgctacttttacacctcatattatcattgtgaatgc |
3402384 |
T |
|
| Q |
323 |
tggagaggtaatatcattttacggattttcatgatgcgaagcaattctatgtactgtaatattcattattagacaagtg |
401 |
Q |
| |
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|||||||||||||||||||| ||||||| ||||||| ||| |||||||| | | |||||||||| |||||| ||||| |
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| T |
3402385 |
tggagaggtaatatcattttttggatttttatgatgcaaagaaattctatttcccataatattcataattagataagtg |
3402463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 223 - 338
Target Start/End: Original strand, 3378339 - 3378451
Alignment:
| Q |
223 |
tgattatttagtgaaagttctttcttcttttgctttcaggccaacttcttgcaacctcagttggtgctgctcttacacctcatattatcattgttaatgc |
322 |
Q |
| |
|
|||||||||||||||||| ||||||| |||| ||||||||| | ||||||| |||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
3378339 |
tgattatttagtgaaagtgctttctttttttc---tcaggccaattgcttgcaagctcagttggtgctgcttttacacctcatattatcattgtgaatgc |
3378435 |
T |
|
| Q |
323 |
tggagaggtaatatca |
338 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
3378436 |
tggagaggtaatatca |
3378451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 3402091 - 3402246
Alignment:
| Q |
17 |
tctttctttgtgatcgtgcacgtatcttgattgaaatagttgtgaaggaggttcaagaatagtttattttgttgttcggaatgttcaatattgtaatatt |
116 |
Q |
| |
|
||||||||||||||| ||| ||| || || ||||||| ||||||||||| || |||||||| |||||||||||| |||||| | ||||||||| |||| |
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| T |
3402091 |
tctttctttgtgatcatgcgcgtttcatggttgaaatgattgtgaaggagtgtcgagaatagtgtattttgttgtttggaatgcttaatattgtattatt |
3402190 |
T |
|
| Q |
117 |
aatatatatgaagtgtcttggtgatgcttgcatcgacttaagatataattgtaaatg |
173 |
Q |
| |
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| ||||||| |||| | |||||| | |||||||| | ||||||||||| |||||||| |
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|
| T |
3402191 |
agtatatatcaagt-tattggtggtacttgcatcaatttaagatataagtgtaaatg |
3402246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 55 - 173
Target Start/End: Original strand, 3378199 - 3378316
Alignment:
| Q |
55 |
gttgtgaaggaggttcaagaatagtttattttgttgttcggaatgttcaatattgtaatattaatatatatgaagtgtcttggtgatgcttgcatcgact |
154 |
Q |
| |
|
|||||||||||| | ||||||||| |||||||||| || ||||||| ||||||||| ||||||||||||| |||| | || ||||| |||||||| | | |
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| T |
3378199 |
gttgtgaaggagtataaagaatagtgtattttgttgctcagaatgtttaatattgtattattaatatatatcaagt-tatttgtgatacttgcatcaatt |
3378297 |
T |
|
| Q |
155 |
taagatataattgtaaatg |
173 |
Q |
| |
|
|||||||||| |||||||| |
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| T |
3378298 |
taagatataactgtaaatg |
3378316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 150
Target Start/End: Original strand, 3376745 - 3376824
Alignment:
| Q |
71 |
aagaatagtttattttgttgttcggaatgttcaatattgtaatattaatatatatgaagtgtcttggtgatgcttgcatc |
150 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||| | |||||||| |
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| T |
3376745 |
aagaatagtgcattttgttgttcggaatgttcaatattgtgttattaatatatatcaagtgtattggtggtacttgcatc |
3376824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 3368084 - 3368174
Alignment:
| Q |
17 |
tctttctttgtgatcgtgcacgtatcttgattgaaatagttgtgaaggaggttcaagaatagtttattttgttgttcggaatgttcaatat |
107 |
Q |
| |
|
||||||||||||||| || |||| |||||||||| || ||||||||||| ||||||||||| || ||||||||| |||||||||||||| |
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| T |
3368084 |
tctttctttgtgatcatgtacgtgtcttgattgagatgcttgtgaaggagtatcaagaatagtgtactttgttgtttggaatgttcaatat |
3368174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 222 - 395
Target Start/End: Original strand, 3368286 - 3368457
Alignment:
| Q |
222 |
gtgattatttagtgaaagttctttcttcttttgctttcaggccaacttcttgcaacctcagttggtgctgctcttacacctcatattatcattgttaatg |
321 |
Q |
| |
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|||||||||||||||||||||||| || || |||||||| || | |||||| |||||||||| || | | || ||||||||||||| |||||| |
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| T |
3368286 |
gtgattatttagtgaaagttctttatttcctt--tttcaggcaaattgtttgcaagctcagttggtactaatttgactcctcatattatcacagttaatc |
3368383 |
T |
|
| Q |
322 |
ctggagaggtaatatcattttacggattttcatgatgcgaagcaattctatgtactgtaatattcattattaga |
395 |
Q |
| |
|
|| |||||||||||| ||||| ||| ||| |||| || |||||||||||| | | |||||||||| |||||| |
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|
| T |
3368384 |
ctagagaggtaatattattttgtggagttttatgaagcaaagcaattctatttcccataatattcatgattaga |
3368457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 290
Target Start/End: Original strand, 3376952 - 3377017
Alignment:
| Q |
223 |
tgattatttagtgaaagttctttcttcttttgctttcaggccaacttcttgcaacctcagttggtgct |
290 |
Q |
| |
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|||||||||||||||||||||||||| ||| | || |||||| ||||||||| |||||||||||| |
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|
| T |
3376952 |
tgattatttagtgaaagttctttctttattt--tgtctggccaatttcttgcaaattcagttggtgct |
3377017 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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