View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14636_low_10 (Length: 234)
Name: NF14636_low_10
Description: NF14636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14636_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 36955007 - 36955165
Alignment:
| Q |
18 |
attattagtctaatcaaaccaacaaccgtcatataacagaaacaaaaactatgatgttgccgtcattacgtgcttatgacctcgaaatctcatatttaat |
117 |
Q |
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| T |
36955007 |
attattagtctaatcaaaccaa-----gtcatataacagaaacaaaaactatgatgttgccgtcattacgtgcttatgacctcgaaatctcatatttaat |
36955101 |
T |
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| Q |
118 |
attcaaatatttatttttcgaaatcccagaattcactcaacaaccatataaattcatctttatc |
181 |
Q |
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| T |
36955102 |
attcaaatatttctttttcgaaatcccagaattcacgtaacaaccatataaattcatctttatc |
36955165 |
T |
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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 36955182 - 36955239
Alignment:
| Q |
165 |
ataaattcatctttatcaattgttcacaatacacacattttgtgcattgtttcatctc |
222 |
Q |
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| T |
36955182 |
ataaattcatctttatcaattgttcacaatacacacattttgtgcattgtttcatctc |
36955239 |
T |
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