View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14636_low_13 (Length: 227)
Name: NF14636_low_13
Description: NF14636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14636_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 13299562 - 13299356
Alignment:
| Q |
1 |
tgtttaattaacaaaccctagctagggacataaattaactaaggtgaaaattaagaatgggaagagggaagattgtgattcgaaggatcgacaactgtac |
100 |
Q |
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| T |
13299562 |
tgtttaattaacaaaccctagctagggacataaattaactaaggtgaaaattaagaatgggaagagggaagattgtgattcgaaggatcgacaactgtac |
13299463 |
T |
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| Q |
101 |
aagcaggcaagtgactttctcaaagaggagaaagggattgatcaagaaagccaaagaattagcaatcctatgtgatgcacaagttggacttgttatattt |
200 |
Q |
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| T |
13299462 |
aagcaggcaagtgactttctcaaagaggagaaagggattgatcaagaaagccaaagaattagcaatcctatgtgatgcacaagttggacttgttatattt |
13299363 |
T |
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| Q |
201 |
tccagca |
207 |
Q |
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||||||| |
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| T |
13299362 |
tccagca |
13299356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 188
Target Start/End: Complemental strand, 36925793 - 36925662
Alignment:
| Q |
57 |
atgggaagagggaagattgtgattcgaaggatcgacaactgtacaagcaggcaagtgactttctcaaagaggagaaagggattgatcaagaaagccaaag |
156 |
Q |
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| T |
36925793 |
atgggaagaggaaagattgtgattcgaaggattgagaatttgacaagccgtcaagtgactttctcaaagagaagaaaagggttgatgaagaaagctaaag |
36925694 |
T |
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| Q |
157 |
aattagcaatcctatgtgatgcacaagttgga |
188 |
Q |
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| T |
36925693 |
aactatccattctttgtgatgcacaagttgga |
36925662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 57 - 188
Target Start/End: Original strand, 2115220 - 2115351
Alignment:
| Q |
57 |
atgggaagagggaagattgtgattcgaaggatcgacaactgtacaagcaggcaagtgactttctcaaagaggagaaagggattgatcaagaaagccaaag |
156 |
Q |
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||||||||||| ||||||| ||| ||||||| ||||| | |||||||||||||||||||||||||| || ||||| |||||| | |||||||| |||| |
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| T |
2115220 |
atgggaagaggaaagattgcaattagaaggattgacaattcaacaagcaggcaagtgactttctcaaaaagaagaaatggattgttgaagaaagcaaaag |
2115319 |
T |
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| Q |
157 |
aattagcaatcctatgtgatgcacaagttgga |
188 |
Q |
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||||| | || || |||||||| |||||||| |
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| T |
2115320 |
aattatccattctttgtgatgctgaagttgga |
2115351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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