View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14636_low_3 (Length: 455)
Name: NF14636_low_3
Description: NF14636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14636_low_3 |
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| [»] scaffold0493 (1 HSPs) |
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Alignment Details
Target: scaffold0493 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: scaffold0493
Description:
Target: scaffold0493; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 7922 - 7538
Alignment:
| Q |
18 |
aattattctcaccttcaatggagaggatttgtcactggaagagacattggaataatcaagggtagttgaagctcggatcttaaagggtttaagaagataa |
117 |
Q |
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| T |
7922 |
aattatactcaccttcaatggagaggatttgtcactggaagagacattggaataatcaagggtagttgaagctcggatcttaaagggtttaagaagataa |
7823 |
T |
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| Q |
118 |
acagagtgagagagaaagggtttgcgaaatttggtgtaaaggttagaacttgaaggtgaagtagcgataaatgttgcagagagagccattagaggatgca |
217 |
Q |
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| T |
7822 |
acagagtgagagagaaagggtttgcgaaatttggtgtaaaggttagaacttgaaggtgaaggagtgatgaatgttgcagagagagccattagaggatgca |
7723 |
T |
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| Q |
218 |
gaatttcaagaatgaaaaattgaacaatgatataatgaaaaggttttaaggttaataaaaaaccacggaatggaagtatagcagaaaatactgaccgtgg |
317 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7722 |
gaatttcaagaataaaaaattgaacaatgatataatgacaagg-tttaaggttaataaaaaaccacggaatggaagtatagcagaaaatactgaccgtgg |
7624 |
T |
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| Q |
318 |
acttgattagatttttacgttggtggaagctaaaatgacaaattaacaactatcacgaatttagctacatggttgtccgaaacaac |
403 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7623 |
acttgattagattcttacgttggtggaagctaaaatgacaaattaacaactatcacgaatttagctacatggttgtccgaaacaac |
7538 |
T |
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