View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14636_low_5 (Length: 375)

Name: NF14636_low_5
Description: NF14636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14636_low_5
NF14636_low_5
[»] chr3 (5 HSPs)
chr3 (16-360)||(42834694-42835038)
chr3 (177-350)||(42843706-42843879)
chr3 (25-114)||(42819561-42819650)
chr3 (165-210)||(42819689-42819734)
chr3 (26-104)||(42843576-42843654)
[»] chr7 (2 HSPs)
chr7 (177-350)||(7363725-7363898)
chr7 (36-104)||(7363950-7364018)
[»] chr8 (2 HSPs)
chr8 (190-350)||(12622306-12622469)
chr8 (280-350)||(12628325-12628395)
[»] chr6 (1 HSPs)
chr6 (189-301)||(30924245-30924357)


Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 360
Target Start/End: Original strand, 42834694 - 42835038
Alignment:
Q  16 atgaactgcggagtaagtcacatgaaactcatcaattgcaaggtcagcttaaagtggcactggaaaatatggctaaatcagaattggagctggtttcaga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42834694 atgaactgcggagtaagtcacatgaaactcatcaattgcaaggtcagcttaaagtggcactggaaaatatggctaaatcagaattggagctggtttcaga 42834793  T
Q  116 gagaaagaagaatcaaatgctaggagatttggttacagtgtatgaggataatgaaactaaccataagcaagatgtgcaaaaattgaactctgaaatgctt 215  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  42834794 gagaaagaagagtcaaatgctaggagatttggttacagtgtatgaggataatgaaactaaacataagcaagatgtgcaaaaattgaactcggaaatgctt 42834893  T
Q  216 gatttgcaagctaagttctctttggagaaagatgaactgaattttgatattgcaagtttgtcaaaaatgaaaatacaattgacctctaaactagagtatt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42834894 gatttgcaagctaagttctctttggagaaagatgaactgaattttgatattgcaagtttgtcaaaaatgaaaatacaattgacctctaaactagagtatt 42834993  T
Q  316 gtgagtctataaacaaggaattagaaaacaaattacgtaaatatg 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  42834994 gtgagtctataaacaaggaattagaaaacaaattacgtaaatatg 42835038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 177 - 350
Target Start/End: Original strand, 42843706 - 42843879
Alignment:
Q  177 cataagcaagatgtgcaaaaattgaactctgaaatgcttgatttgcaagctaagttctctttggagaaagatgaactgaattttgatattgcaagtttgt 276  Q
    |||||| |||| |||||||||||||  ||| |||||| | ||| |||  ||||||||||||  ||||||| | | ||||||| | ||||| |||||||||    
T  42843706 cataagaaagaggtgcaaaaattgatgtctaaaatgcataattggcagactaagttctcttctgagaaaggtaagctgaattctaatattacaagtttgt 42843805  T
Q  277 caaaaatgaaaatacaattgacctctaaactagagtattgtgagtctataaacaaggaattagaaaacaaatta 350  Q
    |||| |||||||||||||||||||||||| | ||| |||||||||||| |||||||||||| ||||||||||||    
T  42843806 caaacatgaaaatacaattgacctctaaattggaggattgtgagtctagaaacaaggaattggaaaacaaatta 42843879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 42819561 - 42819650
Alignment:
Q  25 ggagtaagtcacatgaaactcatcaattgcaaggtcagcttaaagtggcactggaaaatatggctaaatcagaattggagctggtttcag 114  Q
    |||||||||||  ||| ||| |||||||| ||||||||||||||||||||| |||||||||||||| |||| |||||||| | |||||||    
T  42819561 ggagtaagtcatctgagacttatcaattggaaggtcagcttaaagtggcacaggaaaatatggctatatcaaaattggagttagtttcag 42819650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 42819689 - 42819734
Alignment:
Q  165 aatgaaactaaccataagcaagatgtgcaaaaattgaactctgaaa 210  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||    
T  42819689 aatgaaactaaccataaccaagatgtgcaaaaattgaactcggaaa 42819734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 42843576 - 42843654
Alignment:
Q  26 gagtaagtcacatgaaactcatcaattgcaaggtcagcttaaagtggcactggaaaatatggctaaatcagaattggag 104  Q
    ||||||||||||||| |||| |||||||||| |||||||| |||  ||||   | ||||| ||||||| ||||||||||    
T  42843576 gagtaagtcacatgatactcgtcaattgcaaagtcagcttgaagcagcacaaaacaatattgctaaattagaattggag 42843654  T

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Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 177 - 350
Target Start/End: Complemental strand, 7363898 - 7363725
Alignment:
Q  177 cataagcaagatgtgcaaaaattgaactctgaaatgcttgatttgcaagctaagttctctttggagaaagatgaactgaattttgatattgcaagtttgt 276  Q
    |||||| |||| |||||||||||||  |||||||||| | ||| |||  ||||||||||||  |||||||  ||  |||||||| |||||||| ||||||    
T  7363898 cataagaaagaggtgcaaaaattgatgtctgaaatgcataattggcagactaagttctcttctgagaaaggggagttgaattttaatattgcatgtttgt 7363799  T
Q  277 caaaaatgaaaatacaattgacctctaaactagagtattgtgagtctataaacaaggaattagaaaacaaatta 350  Q
    |||| |||||||||||||||||||||||| | ||| |||||||||||| |||||||||||| ||||||||||||    
T  7363798 caaacatgaaaatacaattgacctctaaattggaggattgtgagtctagaaacaaggaattggaaaacaaatta 7363725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 7364018 - 7363950
Alignment:
Q  36 catgaaactcatcaattgcaaggtcagcttaaagtggcactggaaaatatggctaaatcagaattggag 104  Q
    ||||| ||||||| ||||||| |||||||||||| ||||||  ||||||| ||||||| ||||||||||    
T  7364018 catgatactcatctattgcaaagtcagcttaaagcggcactaaaaaatattgctaaattagaattggag 7363950  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 350
Target Start/End: Original strand, 12622306 - 12622469
Alignment:
Q  190 tgcaaaaattgaactctgaaatgcttgatttgcaagctaagttctctttggagaaagatgaactgaattt----tgatattgcaagtttgtcaaaaatga 285  Q
    ||||||||||||||||| | ||| |||||||| | |||||||||||||||||||||||||| || ||       ||   ||||||| | |||  ||||||    
T  12622306 tgcaaaaattgaactctcacatgtttgatttggaggctaagttctctttggagaaagatgagctaaagaacaaatggacttgcaagat-gtctgaaatga 12622404  T
Q  286 aaatacaattgacctctaaactagagtattgtgagtctataaacaaggaattagaaaacaaatta 350  Q
    ||| |||||||||||||||||| ||| | |||||||||| |||||  ||||||||||||||||||    
T  12622405 aaaaacaattgacctctaaactggaggactgtgagtctagaaacagtgaattagaaaacaaatta 12622469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 12628325 - 12628395
Alignment:
Q  280 aaatgaaaatacaattgacctctaaactagagtattgtgagtctataaacaaggaattagaaaacaaatta 350  Q
    |||||||||||||||||| ||||||| | ||  ||| |||||||| |||||  ||||||||||||||||||    
T  12628325 aaatgaaaatacaattgatctctaaattggatgattatgagtctagaaacagtgaattagaaaacaaatta 12628395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 301
Target Start/End: Complemental strand, 30924357 - 30924245
Alignment:
Q  189 gtgcaaaaattgaactctgaaatgcttgatttgcaagctaagttctctttggagaaagatgaactgaattttgatattgcaagtttgtcaaaaatgaaaa 288  Q
    ||||||||| ||||   |||||||| |||| |||| ||  |||| ||||| ||||||||| || || ||| |||||||||||| |||||| |||| ||||    
T  30924357 gtgcaaaaactgaaggatgaaatgcatgatgtgcaggcacagttttcttttgagaaagatcaattgcattctgatattgcaagcttgtcagaaataaaaa 30924258  T
Q  289 tacaattgacctc 301  Q
     ||| ||||||||    
T  30924257 cacagttgacctc 30924245  T

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