View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14636_low_6 (Length: 360)
Name: NF14636_low_6
Description: NF14636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14636_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 52512005 - 52512336
Alignment:
| Q |
16 |
tcatgatcatgagtagtaaatctactatgatgatggtcttgtaaattagcactaaatgatgttgatgaattagttaatagatgtaatgactgcatgttca |
115 |
Q |
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| T |
52512005 |
tcatgatcatgagtagtaaatctactatgatgatggtcttgtaaattagcactaaatgatgttgatgaattagttaatagatctaatgactgcatgttca |
52512104 |
T |
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| Q |
116 |
tatccaaggatgtggtagaagacgaagacgagtaatgattcaagtttgatatatcgatgctcgggtgaatctggctactaatattattgttgcctctact |
215 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512105 |
tatccaaggatgtggtagcagacgaagacgagtaatggttcaagtttgatatatcgatgctcgggtgaatctggctactaatattattgttgcctctact |
52512204 |
T |
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| Q |
216 |
tggagttggaatacttgtgtctccaaagttaggataattttcagcgttataaaattctcctcctgtaaaaagtgtcttgagcatgagagcattcatatcc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512205 |
tggagttggaatacttgtgtctccaaagttaggataattttcagcgttataaaattctcctcctgtaaaaagtgtcttgagcatgagagcattcatatcc |
52512304 |
T |
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| Q |
316 |
ttgtgctcgtcaatattattattcttcatctc |
347 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
52512305 |
ttgtgctcgtcaatattattattcttcatctc |
52512336 |
T |
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