View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14636_low_8 (Length: 253)
Name: NF14636_low_8
Description: NF14636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14636_low_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 25 - 237
Target Start/End: Original strand, 14503420 - 14503629
Alignment:
| Q |
25 |
tcaaataattaaatcaaattaaatgtacacataggttcgaatcacatgaagcaatcctatatgctgagtaatatgttatgagatgagactaccaaaccta |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14503420 |
tcaaataattaaatcaaattaaatgtacacataggttccaatcacatgaagcagtcctatatgcagagtaatatgttatgagatgagactaccaaaccta |
14503519 |
T |
|
| Q |
125 |
attcgttgttccgaacatgaacaatgaaaagaggagtcaaagaaagtagaaacactataagcacaaagtgccttgccatcggagaacttgaaaacttgtt |
224 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14503520 |
attcgttcttccgaacatgaacaatgaa---aggagtcaaagaaagtagaaacactataagcagaaagtgccttgccatcggagaacttgaaaacttgtt |
14503616 |
T |
|
| Q |
225 |
tcacactcaattt |
237 |
Q |
| |
|
||||||||||||| |
|
|
| T |
14503617 |
tcacactcaattt |
14503629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 93 - 235
Target Start/End: Original strand, 30710693 - 30710829
Alignment:
| Q |
93 |
taatatgttatgagatgagactaccaaacctaattcgttgttccgaacatgaacaatgaaaagaggagtcaaagaaagtagaaacactataagcacaaag |
192 |
Q |
| |
|
||||||| |||||||||||| |||||||||| ||| | |||| || ||||||| |||||| ||| |||||||| || |||||||||||||| ||| |
|
|
| T |
30710693 |
taatatgctatgagatgagattaccaaacctgattgg--gttctgagcatgaactatgaaaggagcagtcaaagtaa----aaacactataagcagaaaa |
30710786 |
T |
|
| Q |
193 |
tgccttgccatcggagaacttgaaaacttgtttcacactcaat |
235 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30710787 |
tgtcttgccataggagaacttgaaaacttgtttcacactcaat |
30710829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 93 - 235
Target Start/End: Complemental strand, 19576735 - 19576593
Alignment:
| Q |
93 |
taatatgttatgagatgagactaccaaacctaattcgttgttccgaacatgaacaatgaaaagaggagtcaaagaaagtagaaacactataagcacaaag |
192 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||| ||||||| || |||||||||||||| || |||||||| |||||||||||||||||||| |||| |
|
|
| T |
19576735 |
taatatgttatgagatgagactatcaaacctgattggttgttctgagcatgaacaatgaaaggaagagtcaaacaaagtagaaacactataagctgaaag |
19576636 |
T |
|
| Q |
193 |
tgccttgccatcggagaacttgaaaacttgtttcacactcaat |
235 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19576635 |
tgtcttgccataagagaacttgaaaacttgtttcacactcaat |
19576593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 32520178 - 32520285
Alignment:
| Q |
82 |
tatatgctgagtaatatgttatgagatgagactaccaaacctaattcgttgttccgaacatgaacaatgaaaagaggagtcaaagaaagtagaaacacta |
181 |
Q |
| |
|
||||||| || ||||||||||||||||||||| ||||||||| ||| |||||| || ||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
32520178 |
tatatgcagaataatatgttatgagatgagaccaccaaacctgattgcttgttctgagcatgaacaatgaa---atgagtcaaagaaagtagaaacacta |
32520274 |
T |
|
| Q |
182 |
taagcacaaag |
192 |
Q |
| |
|
|||||| |||| |
|
|
| T |
32520275 |
taagcagaaag |
32520285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 32520449 - 32520496
Alignment:
| Q |
184 |
agcacaaagtgccttgccatcggagaacttgaaaacttgtttcacact |
231 |
Q |
| |
|
|||| |||||| |||||||| |||||| |||||||||||||||||||| |
|
|
| T |
32520449 |
agcagaaagtgtcttgccataggagaatttgaaaacttgtttcacact |
32520496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 235
Target Start/End: Complemental strand, 43162627 - 43162497
Alignment:
| Q |
105 |
agatgagactaccaaacctaattcgttgttccgaacatgaacaatgaaaagaggagtcaaagaaagtagaaacactataagcacaaagtgccttgccatc |
204 |
Q |
| |
|
||||||||||| ||||||| ||| ||||||| || |||||||||||||| || |||||||| | |||||||| |||| | | | ||||| |||||||| |
|
|
| T |
43162627 |
agatgagactaacaaacctgattggttgttctgagcatgaacaatgaaaggaagagtcaaatagagtagaaaaactacaggtagcaagtgtcttgccata |
43162528 |
T |
|
| Q |
205 |
ggagaacttgaaaacttgtttcacactcaat |
235 |
Q |
| |
|
|||||||| ||||||||| |||||||||| |
|
|
| T |
43162527 |
ggagaactcaaaaacttgtaacacactcaat |
43162497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 43172390 - 43172311
Alignment:
| Q |
104 |
gagatgagactaccaaacctaattcgttgttccgaacatgaacaatgaaaagaggagtcaaagaaagtagaaacactata |
183 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| | |||||||||| ||| || ||| ||||||||||||||||||||| |
|
|
| T |
43172390 |
gagatgagactaccaaacctgattggttgttctgggcatgaacaataaaaggaagagcgaaagaaagtagaaacactata |
43172311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 233
Target Start/End: Complemental strand, 53226530 - 53226332
Alignment:
| Q |
40 |
aaattaaatgtacacataggttcgaatcacatgaagcaatcctatat--gctgagtaatatgttatgagatgagactaccaaacctaattcgt---tgtt |
134 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||| || |||||||| || || ||||| ||| |||||||||| || |||| || ||| || |||| |
|
|
| T |
53226530 |
aaataaaatgtacacataggttttaagtacatgaaacattcctatatatgcagaataataagttgtgagatgagattatcaaatctgattggtggttgtt |
53226431 |
T |
|
| Q |
135 |
ccgaacatgaacaatgaaaagaggagtcaaagaaagtagaaacactataagcacaaagtgccttgccatcggagaacttgaaaacttgtttcacactca |
233 |
Q |
| |
|
| |||||||||||||| | | ||||||||||||||| ||| | |||||| | |||||| ||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
53226430 |
ctaaacatgaacaatgagattatgagtcaaagaaagtaaaaatattataaggagaaagtgtcttgccacatgagaacttgaaaacttgtttcaaactca |
53226332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University