View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14637_high_1 (Length: 790)
Name: NF14637_high_1
Description: NF14637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14637_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 720; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 720; E-Value: 0
Query Start/End: Original strand, 1 - 768
Target Start/End: Original strand, 29788262 - 29789030
Alignment:
| Q |
1 |
ggagtagagggaatttgataaatattttgtgaatctagaaacctgaccaagagttcattgtttgagcttaaaatatccaatgcatcttcaaattgcttcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29788262 |
ggagtagagggaatttgataaatattttgtgaatctagaaacctgaccaagagttcattgtttgagcttaaaatatccaatgcatcttcaaattgcttcg |
29788361 |
T |
|
| Q |
101 |
attggcgcagcgtctcatctgttgacagatattttgcttcaatgaatttctgacgaacgagagccatcttcccctcatcaacatcttccctccaccttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29788362 |
attggcgcagcgtctcatctgttgacagatattttgcttcaatgaatttctgacgaacgagagccatcttcccctcatcaacatcttccctccaccttcc |
29788461 |
T |
|
| Q |
201 |
tctctgagattgcatccatgtttcatatccatctttgtaatcaacctgttctgtgcttggatgatgaacttcatgaagcattcccttatccatcataaac |
300 |
Q |
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| T |
29788462 |
tctctgagattgcatccatgtttcatatccatctttgtaatcaacttgttctgtgcttggatgatgaaattcatgaagcattcccttatccatcataaac |
29788561 |
T |
|
| Q |
301 |
ctatcttccactttccaatgtttcaatggccaccctaaatgaccatacatgtcttgataataatcttttgtttggcttctaatcactgataaattcggct |
400 |
Q |
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| T |
29788562 |
ctatcttccactttccaatgtttcaatggccaccctaaatgaccatacatgtcttgataataatcttttgtttggcttctaatcaccgataaattcggct |
29788661 |
T |
|
| Q |
401 |
ctccttttgaaagggtttcaagccccattaatttagcaactacattagatggactatgcttggagnnnnnnnctttggacatttcttggtctattctata |
500 |
Q |
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| T |
29788662 |
ctccttttgaaagggtttcaagccccattaatttagcaactacattagatggactatgcttggagtttttttctttggacatttctaggtctattctata |
29788761 |
T |
|
| Q |
501 |
tgcatcttgatgataggttctccatta-tttttctatcttgatgattgagtttttgaaagtgaagaagctgcatggcaaataggtgctacaatttagtaa |
599 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29788762 |
tgcatcttgatgataggttctccattattttttctatcttgatgattgagcttttgaaagtgaagaagctgcatggcaaataggtgctacaatttagtaa |
29788861 |
T |
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| Q |
600 |
tttatgattataggaataatataatagcataacaatatttttaaactatagaaatcacaagtacaactattacagacaagttggaaataaacaaaaaact |
699 |
Q |
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| T |
29788862 |
tttatgattataggaataatataatagcataacaatatttttaaactatagaaatcacaagtacaactattacagacaagttggaaataaacaaaaaact |
29788961 |
T |
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| Q |
700 |
aaagacaattcagaaacctccaactggtagcataatgctacttatgacacacaaagatacagatcagct |
768 |
Q |
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| T |
29788962 |
aaagacaattcagaaacctccaactggtagcataatgctacttatgacacacaaagatacagatcagct |
29789030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 208 - 310
Target Start/End: Complemental strand, 39872236 - 39872140
Alignment:
| Q |
208 |
gattgcatccatgtttcatatccatctttgtaatcaacctgttctgtgcttggatgatgaacttcatgaagcattcccttatccatcataaacctatctt |
307 |
Q |
| |
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||||||| |||| ||||||| |||||||||| ||||||||||| |||| | |||||||||||||||||||| |||| || |||||||||||||| |
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| T |
39872236 |
gattgcagccatatttcataaatatctttgtaagcaacctgttctctgctcg---gatgaacttcatgaagcatttccttgtc---cataaacctatctt |
39872143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 411 - 491
Target Start/End: Complemental strand, 39872039 - 39871959
Alignment:
| Q |
411 |
aagggtttcaagccccattaatttagcaactacattagatggactatgcttggagnnnnnnnctttggacatttcttggtc |
491 |
Q |
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||||| |||||| ||||||||||| ||||| ||||| | ||||||||||||||| ||||||||||||||||||| |
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| T |
39872039 |
aagggcttcaaggcccattaattttgcaaccacatttggtggactatgcttggaaacaatttctttggacatttcttggtc |
39871959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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