View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14637_high_2 (Length: 581)
Name: NF14637_high_2
Description: NF14637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14637_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 484; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 19 - 543
Target Start/End: Original strand, 27429108 - 27429640
Alignment:
| Q |
19 |
aaaagatgatacctcatttcaatgtatcgactcaaataacactttcaaacatttacaacccaaaaag--------agatgctttattttctctctttata |
110 |
Q |
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| T |
27429108 |
aaaagatgatacctcatttcaatgtatcgactcaaataacactttcaaacattgacaacccaaaaagttaaatagagatgctttattttctctctttata |
27429207 |
T |
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| Q |
111 |
tataaaggtaagtaatcattattcatgaggatcaggagtgtgtggccattgtattttgaatgctgtaaataggatatatctcacaacattcacaaattaa |
210 |
Q |
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| T |
27429208 |
tataaaggtaagtaatcattattcatgaggatcaggagtgtgtggccattgtattttgaatgctgtaaataggatatatctcacaacattcacaaattaa |
27429307 |
T |
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| Q |
211 |
ctatctccatcaactttttgcttattgcactaaaccccacattcccactcaccccaaaacaacaaaacctgaaaacctcaccacattaatacagacacct |
310 |
Q |
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| T |
27429308 |
ctatctccatcaactttttgcttattggactaaaccccacattcccactcaccccaaaacaacaaaacctgaaaacctcaccacattaatacagacaccc |
27429407 |
T |
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| Q |
311 |
ttgttatttcatgcaatgaaacactgaacctatacacttataaccttatctcatacagtgactcatgttgttctcatatggtacaagtataatactacat |
410 |
Q |
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| T |
27429408 |
ttgttatttcatgcaatgaaacactgaacctatacacttataaccttatctcatacagtgactcatgttgttctcatatggtacaagtataataccacat |
27429507 |
T |
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| Q |
411 |
aatcactctgcacgttgcttttattattcgcaactacactttgcttttatcttaaagaagatattatttttccatcacaaacacaagcaaaatcactata |
510 |
Q |
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| T |
27429508 |
aatcactctgcacgttgcttttattattcgcaactacactttgcttttatcttaaagaagacattatttttccatcacaaacacaagcaaaatcactata |
27429607 |
T |
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| Q |
511 |
tatgacacattttttgttattgataaattatgt |
543 |
Q |
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| T |
27429608 |
tatgacacattttttgttattgataaattatgt |
27429640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 415 - 469
Target Start/End: Original strand, 27446785 - 27446841
Alignment:
| Q |
415 |
actctgcacgttgcttttattattcgcaac--tacactttgcttttatcttaaagaa |
469 |
Q |
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| T |
27446785 |
actctgcacgttgcttttattattcacaactatacacattgcttttattttaaagaa |
27446841 |
T |
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