View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14637_low_3 (Length: 350)
Name: NF14637_low_3
Description: NF14637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14637_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 39 - 347
Target Start/End: Complemental strand, 4259887 - 4259579
Alignment:
| Q |
39 |
actagagtatatgttcctttattggtgaaaccaaactaatattcattgcattctcatattcaaccaatcttccaacataagcttataaattaccctgaac |
138 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4259887 |
actagagtatatgttcctttattggtgaaaccaaactaatattcaatgcattctcatattcaaccaatcttccaacataagcttataaattaccctgaac |
4259788 |
T |
|
| Q |
139 |
actctcataagtaataaacttctcaaacagtaggcaagggtggacagggagctgcatggggcactctttggttaagtagatctgtcgattaatggattta |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4259787 |
actctcataagtaataaacttctcaaacagtaggcaagggtggacagggagctgcatggggcactctttggttacgtagatctgtcgattaatggattta |
4259688 |
T |
|
| Q |
239 |
aatcgggaagtgaaggtcagtcatgcgtagcgagaggcaaatcaatgtgttgatgtgcttgtaaatttaagatgttctttcagtcacactgtaatgtttt |
338 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4259687 |
aatcaggaagtgaaggtcagtcatgcgtagcgagaggcaaatcaatgtgttgatgtgcttgtaaatttaagatgttctttcagtcacactgtaatgtttt |
4259588 |
T |
|
| Q |
339 |
atgattcat |
347 |
Q |
| |
|
||||||||| |
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| T |
4259587 |
atgattcat |
4259579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 39 - 347
Target Start/End: Complemental strand, 4263509 - 4263201
Alignment:
| Q |
39 |
actagagtatatgttcctttattggtgaaaccaaactaatattcattgcattctcatattcaaccaatcttccaacataagcttataaattaccctgaac |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4263509 |
actagagtatatgttcctttattggtgaaaccaaactaatattcaatgcattctcatattcaaccaatcttccaacataagcttataaattaccctgaac |
4263410 |
T |
|
| Q |
139 |
actctcataagtaataaacttctcaaacagtaggcaagggtggacagggagctgcatggggcactctttggttaagtagatctgtcgattaatggattta |
238 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4263409 |
actctcataagtaataaacttctcaaacagtaggcaagggtggacagggagctgcatggggcactctttggttacgtagatctgtcgattaatggattta |
4263310 |
T |
|
| Q |
239 |
aatcgggaagtgaaggtcagtcatgcgtagcgagaggcaaatcaatgtgttgatgtgcttgtaaatttaagatgttctttcagtcacactgtaatgtttt |
338 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4263309 |
aatcaggaagtgaaggtcagtcatgcgtagcgagaggcaaatcaatgtgttgatgtgcttgtaaatttaagatgttctttcagtcacactgtaatgtttt |
4263210 |
T |
|
| Q |
339 |
atgattcat |
347 |
Q |
| |
|
||||||||| |
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|
| T |
4263209 |
atgattcat |
4263201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 4259993 - 4259961
Alignment:
| Q |
4 |
tcacaaactacttcctgcaagatataaatcaaa |
36 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
4259993 |
tcacaaactacttcctgcaagatataaatcaaa |
4259961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 4263615 - 4263583
Alignment:
| Q |
4 |
tcacaaactacttcctgcaagatataaatcaaa |
36 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
4263615 |
tcacaaactacttcctgcaagatataaatcaaa |
4263583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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