View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14637_low_4 (Length: 324)
Name: NF14637_low_4
Description: NF14637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14637_low_4 |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: scaffold0197 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 21 - 316
Target Start/End: Original strand, 22472 - 22765
Alignment:
| Q |
21 |
atcaaagcatacacacacaatcacattcaaaacagaacacaaccaaattcagtgttgagtggatacctagtagtcgagaaacatccgc-gagatcgatct |
119 |
Q |
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| T |
22472 |
atcaaagcatacacacacaatcacattcaaaacagaacacaaccaaattcagcgttgagtggatacctagtagtcgagaaacatccgcagagatcgatct |
22571 |
T |
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| Q |
120 |
caatgaagtccatggttttgaccttcaccaagaatactatgcagtgaaacagttgaacaaaagctaacaactttgtgaaacctattcatcagtgatggca |
219 |
Q |
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| T |
22572 |
caatgaagtccatggt---gaccttcaccaagaatactatctagtgaaactgttgaacaaaagctaacaactttgtgaaacctattcatcagtgatggca |
22668 |
T |
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| Q |
220 |
attgaggcactctcctccaaatacaattaccattctcaccaccaccgtgactgcgaatctcacagacacaagccgggtacatcctatgctactcctc |
316 |
Q |
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| T |
22669 |
actgaggcaccctcctccaataacacttactattctcaccaccaccgcgactgcgaatctcacagacacaagccgggtacatcctatgataatcctc |
22765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 21 - 316
Target Start/End: Original strand, 21308857 - 21309150
Alignment:
| Q |
21 |
atcaaagcatacacacacaatcacattcaaaacagaacacaaccaaattcagtgttgagtggatacctagtagtcgagaaacatccgc-gagatcgatct |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21308857 |
atcaaagcatacacacacaatcacattcaaaacagaacacaaccaaattcagcgttgagtggatacctagtagtcgagaaacatccgcagagatcgatct |
21308956 |
T |
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| Q |
120 |
caatgaagtccatggttttgaccttcaccaagaatactatgcagtgaaacagttgaacaaaagctaacaactttgtgaaacctattcatcagtgatggca |
219 |
Q |
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| T |
21308957 |
caatgaagtccatggt---gaccttcaccaagaatactatctagtgaaactgttgaacaaaagctaacaactttgtgaaacctattcatcagtgatggca |
21309053 |
T |
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| Q |
220 |
attgaggcactctcctccaaatacaattaccattctcaccaccaccgtgactgcgaatctcacagacacaagccgggtacatcctatgctactcctc |
316 |
Q |
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| T |
21309054 |
actgaggcaccctcctccaataacacttactattctcaccaccaccgcgactgcgaatctcacagacacaagccgggtacatcctatgataatcctc |
21309150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 36070042 - 36069992
Alignment:
| Q |
40 |
atcacattcaaaacagaacacaaccaaattcagtgttgagtggatacctag |
90 |
Q |
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| T |
36070042 |
atcacattcaaaatagaacacagccaaattcactgttgagtggatgcctag |
36069992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 36069982 - 36069911
Alignment:
| Q |
151 |
gaatactatgcagtgaaacagttgaacaaaagctaacaa-ctttgtgaaacctattcatcagtgatggcaat |
221 |
Q |
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| T |
36069982 |
gaatattatgcaatgaaacaattgaaggaaagctaaaaaactttgagaaacctattcatgagtgatggcaat |
36069911 |
T |
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